Activity
From 02/09/2010 to 03/10/2010
03/04/2010
- 03:26 PM Bug #4856: Ontology Browser as a non-modal palette
- IRC conversation:
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bowers: what if instead of or in addition to drag and drop, it worked more palette like
[12:27... - 10:39 AM Bug #4854: Integrate Context Annotation tab with Column Annotation tab
- Started by making the CustomList have a madlib string representation of the context entry. The template is such:
"The... - 10:00 AM Bug #4853: Save as Duplicate... should copy the Annotation too
- Or should it?
It could also be an option since I can see wanting to get rid of the annotation (starting fresh) like i...
03/01/2010
- 02:36 PM Bug #4856: Ontology Browser as a non-modal palette
- Use Proposals:
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1. Drag and Drop
-class can be selected from the tree and dragged to a:
-madlib field ... - 09:42 AM Bug #4856 (New): Ontology Browser as a non-modal palette
- From Shawn:
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5. I still think we should display the current drop-down term
selection as a panel in the right-ha... - 09:39 AM Bug #4855 (New): Reorder the Full Annotation rows to match madlib order
- From Shawn:
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2. The full annotation should be more closely aligned to the terms
used in the madlib. So, e.g., I... - 09:37 AM Bug #4854 (New): Integrate Context Annotation tab with Column Annotation tab
- Make one compete madlib for the column annotation.
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1. I'd like to see the context annotation tab be folded int... - 09:11 AM Bug #4853 (Resolved): Save as Duplicate... should copy the Annotation too
- If you duplicate an EML package, the Annotation should be duplicated as well
02/25/2010
- 01:32 PM Bug #4844 (Resolved): Dynamically resize Ontology selection fields
- This used to work when I was using a label to render the ontology selection widget, but the text field does not resiz...
- 12:03 PM Bug #4824: Ontology Browser - double click does not always select and close the popup
- while working on this, I noticed that if you tab between windows (cmd+tab on Mac) you'd trigger the pop up to be show...
- 11:34 AM Bug #4824: Ontology Browser - double click does not always select and close the popup
- ...because the tree is recreated during the search (typing in the text field), the double click listener was lost.
It... - 11:13 AM Bug #4824: Ontology Browser - double click does not always select and close the popup
- This seems to be happening when I type in the text field to initiate a search
- 11:09 AM Bug #4819: "Column Annotation" view duplicates mappings
- I should have been editing this bug instead of the bug about overwriting annotations. They were caused by the same is...
- 10:51 AM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
- -added logging
-use member variable for annotation page reference (used in event handling methods)
-reset the annotat... - 09:57 AM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
- and it's back
- 09:42 AM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
- this is working now. I've restricted how you can use the AnnotationPage's methods so as to avoid duplicating mappings...
02/24/2010
- 03:16 PM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
- here's my thinking:
-there should be a [rather lightweight] class that holds the tabbed pane
-this AnnotationTabPane ... - 02:08 PM Bug #4836: Column Annotation page overwrites changes made in Full Annotation
- Alternatively, create StateChangeEvents that reflect the change regardless of where it happens, so that updates to th...
- 02:02 PM Bug #4836 (Resolved): Column Annotation page overwrites changes made in Full Annotation
- Because of how I've set up the listener on the madlib tab, if you make a change directly to the annotation table, the...
- 01:38 PM Bug #4833: Direct Annotation (table) is adding incomplete mappings
- I introduced this bug when consolidation the code that looks up the current annotation and attribute. simple as omitt...
- 01:27 PM Bug #4833 (Resolved): Direct Annotation (table) is adding incomplete mappings
- When I double click a cell in the annotation table to select a class I end up completely hosing the annotation and th...
- 01:16 PM Bug #4823: Save Annotations... menu option improvements
- these are committed. 'course we have to figure out a better "whole package" save eventually.
- 11:15 AM Bug #4822: Include "Annotation Context" tab for editing the contexts
- done
- 10:54 AM Bug #4822: Include "Annotation Context" tab for editing the contexts
- Now using the Context tab to add/edit/remove the entries.
Now I just need to remove the Add/Remove Context... menu it...
02/23/2010
- 03:28 PM Bug #4822: Include "Annotation Context" tab for editing the contexts
- the sizing issue has been dealt with.
- 02:23 PM Bug #4822: Include "Annotation Context" tab for editing the contexts
- added a new page that uses one of Morpho's CustomList widgets to make the modifications.
so far:
-the page is a third... - 08:21 AM Bug #4822 (Resolved): Include "Annotation Context" tab for editing the contexts
- Currently you can only add a new context relationship or remove an existing one. There is no dedicated UI for display...
- 10:30 AM Bug #4825: Add Context is not saving the Relationship
- now getting the class from the widget, whereas previously the whole class URI was in the text field
- 09:51 AM Bug #4825 (Resolved): Add Context is not saving the Relationship
- When you add a Context to the currently selected Observation, the context is saved in the XML, but the Relationship i...
- 08:27 AM Bug #4824 (Resolved): Ontology Browser - double click does not always select and close the popup
- I've intermittently found that double clicking the tree does not actually close the popup - instead it behaves like t...
- 08:22 AM Bug #4823 (Resolved): Save Annotations... menu option improvements
- 1. There should be no ellipsis since there is not additional UI after invoking the option. (There should be when we s...
02/22/2010
- 05:23 PM Bug #4821: Changes in madlib view do not immediately show in table view
- When the tab is changed, a column selection event is fired which triggers the annotation to be saved as it currently ...
- 05:01 PM Bug #4821 (Resolved): Changes in madlib view do not immediately show in table view
- If you enter an annotation in the "Column Annotation" tab then switch to the "Full Annotation" view you will not see ...
- 04:45 PM Bug #4819: "Column Annotation" view duplicates mappings
- I encountered another case where the values from one annotation were populating and saving in another column's.
I cha... - 03:27 PM Bug #4819: "Column Annotation" view duplicates mappings
- Now "resetting" the madlib annotation tab so that the old values are not saved as a new mapping for the next selected...
- 11:57 AM Bug #4819 (Resolved): "Column Annotation" view duplicates mappings
- If you enter an Annotation using the Column Annotation madlib view, then switch to the table view and select another ...
02/19/2010
- 10:33 AM Bug #4813: Include class label/description when searching
- Now searching the labels that are included in the ontology.
- 09:25 AM Bug #4813 (Resolved): Include class label/description when searching
- Right now searches are fuzzy matching on the class name only. We should be looking into other text that is associated...
- 10:01 AM Bug #4780: "Mad lib" annotation screen
- closing for now - bound to be additional changes requested after review
- 10:01 AM Bug #4814: Highlight search result matches in ontology browser
- highlighting the first core match in the result tree
- 09:27 AM Bug #4814 (Resolved): Highlight search result matches in ontology browser
- Currently the tree expands and prunes to show only search matches, their ancestors, their children, and their sibling...
- 09:04 AM Bug #4788: Popup lightweight ontology browser
- closing this - i like how it's working at the moment. feels pretty natural to navigate and double click
02/17/2010
- 10:15 AM Bug #4788: Popup lightweight ontology browser
- would like to add:
-DOUBLE CLICK to select the class and close the popup
-text field should show currently selected c... - 10:13 AM Bug #4794: "Mad lib" as a "Column View" tab
- this is done - might be tweaked as others start to use it and provide feedback
- 10:04 AM Bug #4794: "Mad lib" as a "Column View" tab
- tweaked the padding of the data table so that the columns remain aligned with the annotation table that is now in a t...
- 09:15 AM Bug #4794: "Mad lib" as a "Column View" tab
- no more help text or scrollbars - fits nicely
02/16/2010
- 02:23 PM Bug #4794: "Mad lib" as a "Column View" tab
- I've parameterized the Annotation Page so that it omits the help text and the Observation/Measurement options and onl...
- 01:40 PM Bug #4794: "Mad lib" as a "Column View" tab
- oh, I also don't like that I have to save after each change in column selection (in case they have made a change in t...
- 01:34 PM Bug #4794: "Mad lib" as a "Column View" tab
- I've got the extra tab showing the contents of the same page that shows up when you "Annotate current column..."
This...
02/15/2010
- 08:01 AM Bug #4788: Popup lightweight ontology browser
- also, ENTER key is not being captured by the popup - the underlying frame hears it first as if you've clicked the Ok ...
02/12/2010
- 05:14 PM Bug #4788: Popup lightweight ontology browser
- Now:
-CLICK on the field and the popup is shown
-TAB will save current selection from the popup
-ESC exits without sa... - 03:46 PM Bug #4788: Popup lightweight ontology browser
- This is working with some more room for refinement:
-TAB and/or ENTER key should trigger the selection and close the ... - 03:54 PM Bug #4794 (Resolved): "Mad lib" as a "Column View" tab
- Include another tab where the Annotation Table resides. The "Column View" tab would show the madlib phrase for the cu...
- 03:51 PM Bug #4774: Make spyglass icon more button-like
- no more spyglass icon - replaced with a text field (for initiating searches)
- 03:50 PM Bug #4780: "Mad lib" annotation screen
- Reuse this madib UI in a tab where the Annotation Table is located.
When this "Column View" tab is selected:
-display...
02/11/2010
- 01:06 PM Bug #4779: Ontology Browser - use hybrid tree/table UI
- this now works - updated the JTreeTable code from the java tutorial
http://java.sun.com/products/jfc/tsc/articles/boo... - 10:39 AM Bug #4788 (Resolved): Popup lightweight ontology browser
- Instead of the modal dialog, the browser should just be a super-duper-combobox
02/10/2010
- 06:07 PM Bug #4777: Ontology Browser - show only search matches in the tree
- doing this in the "realtime ajaxy" style might be very resource intensive - especially as the number and size of the ...
- 05:53 PM Bug #4777: Ontology Browser - show only search matches in the tree
- I have the tree filtering for the searches now.
When no search term is entered, the tree resets itself (might want a ... - 09:57 AM Bug #4780: "Mad lib" annotation screen
- added mad lib phrasing to the "Add Context..." menu:
"The Observation was made where the <Entity> was <Relationship>...
02/09/2010
- 04:18 PM Bug #4780: "Mad lib" annotation screen
- There's now a version of the mad lib form when you use the "Annotate current column..." option.
- 02:40 PM Bug #4780: "Mad lib" annotation screen
- bowers: Here is the whole madlib (i think):
The <characteristic> of the <entity*> was recorded using the <standard>... - 01:55 PM Bug #4768: UI for managing annotation ontologies
- done for this round of plugin development - will revisit when loading remote (metacat) ontologies as well
- 01:54 PM Bug #4770: Load Annotations from Metacat in Annotation plugin
- adding dependency on the UI bug so I can close that but still have a link.
My hunch is that we'll want to manage loca... - 01:52 PM Bug #4776: Do not display ontology URI in any UI components
- removed from the comment field and from the ontology browser
- 01:51 PM Bug #4775: Ontology Browser - omit the ontology URI from top-level
- ontology is not the top level - only the appropriate superclass[es] for the widget are shown.
the Ontology name appea... - 01:27 PM Bug #4778: Ontology Browser - include more metadata about selected class
- now showing two columns:
-class name
-ontology name (not the URI)
when you select a class, the description shows in ... - 10:52 AM Bug #4779: Ontology Browser - use hybrid tree/table UI
- base classes were already in Morpho for the Access control page.
Made some modifications for use with Onology browsin...
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