VegBank

08/24/2006

11:41 PM Bug #2523 (Resolved): We need a mechanism to require properties to be set in build.properties

We used to compare build.properties with build.properties.compare and anything that was in the latter but not the for... Michael Lee

07:00 PM Bug #2521: XML needs to reference new xsd

http://vegbank.org/vegdocs/xml/vegbank-data-ver1.0.5-full.xsd now exists, as referencing in the above description/com... Michael Lee

06:46 PM Bug #2521 (Resolved): XML needs to reference new xsd

At the top of our XML documents, we have a declaration:
<VegBankPackage xmlns:xsi="http://www.w3.org/2001/XMLSchema-... Michael Lee

06:52 PM Bug #2522 (Resolved): XML comments should be turned off

currently the XML is created with a lot of debugging statements inserted. While these aren't horrible, it would be a... Michael Lee

06:44 PM Bug #2520 (Resolved): XML Doesn't validate: DateTime invalid

In our XML stream, we have tons of date fields that are now being output like so:
<observation.obsStartDate>2001-1... Michael Lee

02:46 PM Bug #2519: Tracking bug for upgrade of vegbank

-possibly add a link on the vegbank homepage describing how one would get the vegbank software if they wanted it. Chad Berkley

02:39 PM Bug #2519: Tracking bug for upgrade of vegbank

-install awstats Chad Berkley

01:09 PM Bug #2519: Tracking bug for upgrade of vegbank

-tag cvs for the release Chad Berkley

01:08 PM Bug #2519: Tracking bug for upgrade of vegbank

-Send a message to users that vegbank will be down for a day or two while we get this done. Chad Berkley

12:46 PM Bug #2519 (In Progress): Tracking bug for upgrade of vegbank

Tasks that need to be done on vegbank for the upgrade (in no particular order):
-modify backup procedures so that ... Chad Berkley

11:59 AM Bug #821: Notes: add new note form, link from views of things to note

changing the milestone Chad Berkley

11:43 AM Bug #2002: add VegBranch downloads to cache and fix infinite loop problem

The xml cache is now working as far as I can tell. xml cache items get created upon upload to the system. If an ite... Chad Berkley

11:41 AM Bug #1975: Iteratively query to narrow or broaden query results

changing milestone Chad Berkley

11:40 AM Bug #1860: XML Loader: need to read incoming accessionCodes from user and check to see if already loaded to VegBank

changing milestone and reassigning to mlee Chad Berkley

11:39 AM Bug #1859: XML Loader: need receipt for VegBranch to update user's local AccessionCodes

changing the milestone and re-assigning to mlee Chad Berkley

11:36 AM Bug #833: Management page needed with full ability to modify accounts

I'm going to close this bug because I don't think there is anything else left to do with it. Restarting tomcat from ... Chad Berkley

08/17/2006

01:31 PM Bug #2497: Denorm utility incorrect in order of statements (based on tables, not sequence)

the denormutility now builds a vector of all of the keys in the sqlStore.properties file and sorts them by the sort v... Chad Berkley

08/15/2006

03:31 PM Bug #2515 (Resolved): Loader gets sequence values when loading old data

The XML Loader appears to get the next sequence value for each element it encounters, even if the element is not adde... Michael Lee

08/14/2006

04:50 PM Bug #2481: Fix Backup Strategy: where backups go

colby has confirmed that this is working. //vegbank/usr/vegbank/backup/latest is being backed up to tape with NCEAS ... Michael Lee

04:49 PM Bug #1862: treat plantConcept and commConcept matching accCodes differently

I don't think this would be all that complex for new commClasses of an observation -- it's just one table to look up ... Michael Lee

04:47 PM Bug #1946: try to use "commTypeID" for Z_USER_I

not needed at all. Can change label of field if that's helpful Michael Lee

04:46 PM Bug #1352: choose which comms from commInterpretation - higher level obs summary

allow std view of plots to be configurable as to which comms to see (most recent, best fit, original) and what names ... Michael Lee

04:45 PM Bug #2406: Automate homepage map- color by number of plots per state

now that we have no more funding after August, we need this to be done. Matt Jones has been emailed to try to get id... Michael Lee

04:44 PM Bug #2468: show error estimates of mapped plots

Error is estimated using colored icons. Michael Lee

04:42 PM Bug #675: Evaluate Tutorial

Lots has changed since the tutorial was written. Probably needs to be updated. But is this a good format for it? Michael Lee

04:41 PM Bug #2402: Strategy to update denormalized data, cache, pages

I think we decided against triggers as they proved to be slow and potentially circular. This bug remains of high imp... Michael Lee

04:40 PM Bug #2483: Link into site the new searchable data dictionary (and glossary?)

Mlee can do this after Chad leaves if need be. Michael Lee

04:40 PM Bug #2435: Store XML file's AccessionCodes in userDatasetItem

will not be needed if we can get bug 2394 working. Michael Lee

04:39 PM Bug #2282: Confirm that "taxonAlt" loads via XML Loader

yup, it does. Michael Lee

04:39 PM Bug #2002: add VegBranch downloads to cache and fix infinite loop problem

So when does the bootstrapper function? Does it search the DB periodically? What if we update a plot- how/does the ... Michael Lee

04:38 PM Bug #1860: XML Loader: need to read incoming accessionCodes from user and check to see if already loaded to VegBank

will not be necessary if we can get bug 2394 working! Michael Lee

04:37 PM Bug #1859: XML Loader: need receipt for VegBranch to update user's local AccessionCodes

will not be necessary if we can get bug 2394 working! Michael Lee

04:36 PM Bug #2484: add min cover % and max cover % to constancy table

donE! Michael Lee

04:35 PM Bug #2482: automate caching of data for homepage -- replace ant function

Very important! Perhaps we could set a cron job to run the right ant task to get this done? Or somehow else just ge... Michael Lee

04:34 PM Bug #2478: Implement Nightly/Weekly Cron (SQL)

caching of homepage data is CRITICAL that it be done somehow without ant.
Perhaps we could set a cron-job to run ant... Michael Lee

04:32 PM Bug #2442: Create a "request new AccessionCode" function for VegBranch in VegBank

getPKFromAccessionCode() needs to be modified to look for the accessionCode in the "lookup table" if it isn't already... Michael Lee

04:08 PM Bug #2453: Empty DB created, add necessary population + verify

aux_roles need to be prepopulated, as the loader doens't allow new ones (correct behaviour) Michael Lee

04:02 PM Bug #1877: Alvar data: denorms, keywords, xml cache

This dataset is now ready to go, and has been loaded onto Aldo as a test. It can be loaded to VegBank after the rein... Michael Lee

08/09/2006

11:31 AM Bug #2444: user passwords are stored in clear text in the database

The email password function now works. It creates a random password and emails that the the user asking him/her to c... Chad Berkley

08/08/2006

03:42 PM Bug #2444: user passwords are stored in clear text in the database

I've altered the password system so that it now accepts and stores MD5 digests instead of clear text passwords. I've... Chad Berkley