Ecoinformatics Redmine

06/09/2009

01:30 PM Kepler Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name

Even with "As Field" and "As Column Vector" we only nd up with a single port for the Stem_pattern column (even though... ben leinfelder

12:15 PM Kepler Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name

This makes some sense: EML allows the names to be the same. A RecordToken cannot have two records with the same name.... ben leinfelder

12:32 PM Kepler Bug #4132: Workflow Run Manager - Open in New Window is just opening the workflow, not the ROML or report

We can open the ROML - that'll make sense. Not sure how we would want to "open the report" - right now that UI is bas... ben leinfelder

12:10 PM Kepler Bug #4142: EML 2 Dataset caches restricted datasets, allows access across sessions

this is known behavior. as you say there is a certain "oh, really?" factor to it. I've marked to revisit at a "LATER"... ben leinfelder

11:59 AM Kepler Bug #4119: Report Model - use LSID to link layout to workflow

will continue to use the WorkflowManager (for sanparks).
Using LSID for the linkage - that's a win! ben leinfelder

06/08/2009

01:50 PM Kepler Bug #4129: "unable to parse the metadata: null" with dataset judithk.306.21

i said i'd look at this... ben leinfelder

11:39 AM Kepler Bug #3635: Create ReportItem Type Hierarchy

I think it will be very useful to make StaticReportItem subclasses - if only to make rendering them in the UI more st... ben leinfelder

11:34 AM Kepler Bug #3998: Report Viewer - render Report Instance on???Event

when the view changes, an event is fired and the viewer is now listening/responding that that event. ben leinfelder

11:33 AM Kepler Bug #3647: Create Report Assembler

the assembler is in place.
it's up to the various Item subclasses to get their values when needed. ben leinfelder

11:29 AM Kepler Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances

We're now using a WorkflowRun object (subclass of NamedObj) to store the run provenance metadata. This moml snippet i... ben leinfelder

11:26 AM Kepler Bug #4001: WRP - Save/Open KARs containing MOMLs and ROMLs

created ReportLayoutKAREntryHandler for writing ROML to the KAR when it's associated workflow is saved as a KAR.
simi... ben leinfelder

06/02/2009

11:45 AM FIRST Bug #3522: Allow specification of points possible for each question during data upload

added the "points" possible column to the datatable definition.
NOTE: it is defined as a float with precision of 0.1 ... ben leinfelder

06/01/2009

10:54 AM Kepler Bug #4121 (Resolved): Queryable - use LSID to look up workflows

Now that we are using LSIDs to identify workflows, can the Queryable implementations also use that? Currently they pe... ben leinfelder

10:51 AM Kepler Bug #4119: Report Model - use LSID to link layout to workflow

making progress using ObjectManager to keep track of workflows and layouts. still using Workflow and WorkflowManager ... ben leinfelder

05/30/2009

03:28 PM Kepler Bug #4119 (Resolved): Report Model - use LSID to link layout to workflow

Now that he have a Kar Entry Handler for ROML, we need to use the cache+lsid for storing and retrieving that layout f... ben leinfelder

05/29/2009

01:55 PM FIRST Bug #3522: Allow specification of points possible for each question during data upload

At this point (data import) we will have one question (IQuestion) for every response item (even in the case when ther... ben leinfelder

05/27/2009

10:10 AM FIRST Bug #3658: Need to be able to save during parsing process

I think this is doable, but I'm not sure if it's exactly what we want every time there is a request to "Edit" the ass... ben leinfelder

05/22/2009

10:24 AM Kepler Bug #3764: Kepler needs to support EML 2.1.0

There's no way to add EML 2.1.0 support to Kepler 1.0.0.
We will have a "release" of some sort for the TPC training i... ben leinfelder

05/19/2009

05:08 PM Metacat Bug #4083: Metacat doesn't declare XML document encoding

Even with storing the "original" document you have to be aware of the encoding when writing to the Metacat file syste... ben leinfelder

04:58 PM Metacat Bug #4085: The session couldn't be kept after login through devtools.html

what if you omit the "sessionid=" form the query string? seems like passing in a blank would confuse the other sessio... ben leinfelder

04:24 PM Kepler Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations

it's not necessarily the Preview function per se - more that I can see many many errors about numeric format exceptio... ben leinfelder

11:25 AM Kepler Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations

if you update from the development trunk, you should now have three different document types available for the KNB Au... ben leinfelder

11:19 AM Kepler Bug #3764: Kepler needs to support EML 2.1.0

let's reopen if there are other problems that crop up. I think the dataTable parsing is pretty much the same from eml... ben leinfelder

10:41 AM Kepler Bug #3764: Kepler needs to support EML 2.1.0

In the Kepler Registry: updated the Query Service and Authenticated Query Service entries to include EML 2.1 doctypes ben leinfelder

10:23 AM Kepler Bug #3764: Kepler needs to support EML 2.1.0

I've added a metadata specification class to the util module (like eml 2.0.0 and eml 2.0.1 have).
Also allowed both "... ben leinfelder

05/18/2009

02:48 PM Kepler Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations

this is now an EML 2.1.0 document. Kepler does not yet have support for 2.1.0.
Will look into that - there is a bug f... ben leinfelder

09:25 AM Kepler Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets

i'm now getting stuck on the initializing step of the workflow... (osx) ben leinfelder

08:43 AM Kepler Bug #4068: File Menu should display 5 most recently used workflows

Last I knew, the "last used directory" was remembered (unless you restart Kepler). It's very convenient [for me]. ben leinfelder

05/13/2009

04:44 PM Kepler Bug #4066: Allow legacy LSIDs to be parsed, but not serialized

Example XML snippet was from a kruger TPC workflow that had an ImageJ actor (probably from a while back) in the workf... ben leinfelder

04:43 PM Kepler Bug #4066 (Resolved): Allow legacy LSIDs to be parsed, but not serialized

After shifting to a non-IBM implementation of LSIDs, a few workflows were encountered that had actors using dots (.) ... ben leinfelder

05/12/2009

01:54 PM Kepler Bug #3893: EML 2 Dataset not working with local data

re-open:
dataFile is not being reloaded when attribute changes. ben leinfelder

11:02 AM Kepler Bug #3893: EML 2 Dataset not working with local data

retargeted for bookkeeping purposes ben leinfelder

11:01 AM Kepler Bug #3893: EML 2 Dataset not working with local data

using absolute URL for the local data file even when in the same directory ben leinfelder

11:04 AM Kepler Bug #3890: EML 2 Dataset has trouble with a certain data table

works for me now. can reopen if turns out the fix was not fully adequate. ben leinfelder

10:26 AM Kepler Bug #3890: EML 2 Dataset has trouble with a certain data table

retargeting to 2.0 - want to have this resolved by then (configuration) ben leinfelder

11:02 AM Kepler Bug #3892: EML 2 Dataset file path confusion

using absolute URL now ben leinfelder

05/11/2009

05:21 PM Kepler Bug #3890: EML 2 Dataset has trouble with a certain data table

Found that "tab delimited" datatables from Morpho are using "#x09" as the character. This does not work with the HSQL... ben leinfelder

01:52 PM Kepler Bug #3991: large workflow errors

this needs to be fixed if it remains a problem - retargeting to 2.0 ben leinfelder

01:51 PM Kepler Bug #3991: large workflow errors

I cleared the cache and tried opening the workflows (first the parts, then the whole).
It opens - sure there are tons... ben leinfelder

01:37 PM Kepler Bug #3991: large workflow errors

yikes! that's a lot of memory.
rain.xml seems to open (eventually) for me.
Looking into the "Unable to parse the Met... ben leinfelder

10:44 AM Kepler Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets

I recognize that the error messages are annoying, but I'm not sure what the alternative is.
If you are authenticated ... ben leinfelder

08:09 AM FIRST Bug #4045: Incorrect use of <item> elements in QTI

moved the Question.generateXML() method into the ResponseItem superclass. Now response items create just one item/qti... ben leinfelder

07:42 AM FIRST Bug #3514: Import assessments with no assessment-level score detail

I think you could [easily?] bypass the "assign question numbers to scores" step of the import wizard and end up with ... ben leinfelder