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From 04/05/2014 to 05/04/2014

04/30/2014

02:19 PM MetacatUI Bug #6545 (Resolved): The loading message for the Publish action in MetadataView looks odd in the default theme
Lauren Walker
02:17 PM Metacat Feature #6530 (Resolved): Create a new service to update DOI pointers
I checked in the UpdateDOI class today which has the ability to either:
-Update all DOIs for metadata with an EML na...
Lauren Walker
01:33 PM Metacat Bug #6531 (Resolved): Make sure that the MN node description wouldn't be overwritten by the default value during a Metacat upgrading
I can't reproduce the bug any more. I also looked the code and the node description shouldn't be overwritten by the d... Jing Tao

04/29/2014

05:14 PM Morpho Bug #6544 (New): Check the validity of the URL before letting someone save it.
Corinna found that the morpho hangs if the metacat url is set incorrectly. But I can't reproduce it. If the url misse... Jing Tao

04/25/2014

03:28 PM Morpho Bug #6431 (Closed): Morpho is frozen when it connects a Metacat running on Ubuntu 12.04
ben leinfelder
03:02 PM MetacatUI Task #6543 (Resolved): Display PDFs from data packages in the MetadataView
This should be pretty simple using an iframe Lauren Walker
03:01 PM MetacatUI Task #6540 (Resolved): Display an image caption from information in the metadata
I added a caption below each image in the lightbox. I grab the Object Name from the rendered metadata returned from m... Lauren Walker
12:36 PM MetacatUI Task #6540 (Resolved): Display an image caption from information in the metadata
This is a temporary solution until we start to store more information about Other Entity files Lauren Walker
02:25 PM Metacat Bug #6542 (Closed): Fix MNodeService.systemMetadataChanged() to be asynchronous
The DataONE MNWebTester will at times show failures against Metacat MNs for calls to MNAuthorization.systemMetadataCh... Chris Jones
01:16 PM MetacatUI Bug #6541 (Resolved): "Details" links from package contents tables do not work (no associated anchor tag)
Lauren Walker
12:31 PM MetacatUI Task #6539 (Resolved): Do not preload all images in the lightbox gallery
The fancybox API allows an option to preload X images. I chose 1 so that the next image only is preloaded. Lauren Walker
11:51 AM MetacatUI Task #6539 (Resolved): Do not preload all images in the lightbox gallery
When there are multiple images, especially multiple large images, in the lightbox gallery, all image in the gallery a... Lauren Walker
11:49 AM MetacatUI Task #6535 (Resolved): Test images with high resolution
sample package: https://dev.nceas.ucsb.edu/#view/knb.478.1 Lauren Walker
10:32 AM MetacatUI Task #6535 (Resolved): Test images with high resolution
Lauren Walker
11:46 AM MetacatUI Task #6538 (Resolved): Test small images for design purposes
Sample package: https://dev.nceas.ucsb.edu/#view/knb.478.1 Lauren Walker
10:40 AM MetacatUI Task #6538 (Resolved): Test small images for design purposes
About 100px or so. Lauren Walker
11:45 AM MetacatUI Task #6537 (Resolved): Test image with transparency for design purposes
Lauren Walker
10:37 AM MetacatUI Task #6537 (Resolved): Test image with transparency for design purposes
Lauren Walker
11:43 AM MetacatUI Task #6536 (Resolved): Test all image file types
sample package: https://dev.nceas.ucsb.edu/#view/knb.478.1
I've tested gif, jpg, png, tiff, bmp, and svg.
Lauren Walker
10:34 AM MetacatUI Task #6536 (Resolved): Test all image file types
Lauren Walker
11:42 AM MetacatUI Task #6534 (Resolved): Test packages with multiple images
View https://dev.nceas.ucsb.edu/#view/knb.478.1 to see a metadata view with multiple images Lauren Walker
10:29 AM MetacatUI Task #6534 (Resolved): Test packages with multiple images
Lauren Walker

04/24/2014

04:20 PM Metacat Bug #6517 (Closed): Sanparks FGDC upload does not accept data files
Switched to use Apache's FileUpload library and can now handle the chunked streaming uploads. Added a test for this s... ben leinfelder
12:05 PM MetacatUI Story #6319: Filter spatial data by centroid totally encompassed in the map viewport rather than bounding box encompassed in the map viewport
On today's call, I thought Peter mentioned something about changing the SOLR type of the geohash fields from "text" t... ben leinfelder
11:56 AM MetacatUI Story #6319: Filter spatial data by centroid totally encompassed in the map viewport rather than bounding box encompassed in the map viewport
The filtering can actually be done by the geohash rather than the indexed centroid lat,long values. The finest geohas... Lauren Walker
11:58 AM MetacatUI Feature #5975: Implement 'Statistics' view
Changing this ticket to reflect that the statistics view we have implemented is more general than a user profile. Lauren Walker
11:52 AM MetacatUI Feature #6533 (New): Add capability to switch between querying the MN and CN in the search interface
Lauren Walker
11:50 AM Metacat Feature #6512: Add brief explanation to Metacat docs for using custom map markers in a custom theme
Technically this is a part of the metacat project Lauren Walker
11:49 AM Metacat Task #6532 (Closed): Explain different metacat and CN endpoints in the MetacatUI docs
Add a section to the Metacat documentation that explains how to create a new AppModel for pointing to a custom endpoi... Lauren Walker
11:22 AM Metacat Bug #6531 (Resolved): Make sure that the MN node description wouldn't be overwritten by the default value during a Metacat upgrading
When a Metacat was configured as a DataONE member node, the node description and et al would be stored in the metacat... Jing Tao

04/23/2014

12:18 PM Metacat Feature #6530 (Resolved): Create a new service to update DOI pointers
Add to the admin interface a way to specify a list of pids or a formatId and update the URLs associated with those DO... Lauren Walker
10:45 AM Metacat Bug #6520 (Closed): Metacat indexing the resource map prior to metadata document
Tested package upload from Morpho and the resourceMap was successfully indexed. ben leinfelder
10:26 AM MetacatUI Task #6524: Choose a JS lightbox library
Additional notes on fancybox:
- I've tested it in multiple browsers, including the dreaded IE 8, and it works fine...
Lauren Walker
10:20 AM Metacat Bug #6529 (Closed): Solr query used for ORE lookup in Metacat has a syntax issue
Corrected the syntax in trunk and added an additional JUnit assertion to the ORE package test that already existed. ben leinfelder
10:11 AM MetacatUI Task #6527 (Resolved): Add Fancybox to the MetacatUI Require.js config
I have tested fancybox in the following browsers with no errors:
Safari 7.0.3
Firefox 4,9,16
Chrome 34.0.1847.11...
Lauren Walker

04/22/2014

03:39 PM Metacat Bug #6520 (In Progress): Metacat indexing the resource map prior to metadata document
Now we will submit the ORE for indexing after we are sure the metadata document has been indexed. ben leinfelder
01:31 PM Metacat Bug #6520: Metacat indexing the resource map prior to metadata document
I also saw the error when i used morpho 1.10 to insert a package with data:
[ERROR]: org.apache.solr.common.SolrExce...
Jing Tao
01:30 PM Metacat Bug #6520: Metacat indexing the resource map prior to metadata document
Actually, the localhost has the same error:
[ERROR]: Solr index doesn't have the information about the id tao.13010....
Jing Tao
03:33 PM Metacat Bug #6529: Solr query used for ORE lookup in Metacat has a syntax issue
I can see this happening on the KNB. Metacat is querying itself (solr index) to find potential OREs and seems there's... ben leinfelder
03:26 PM Metacat Bug #6529 (Closed): Solr query used for ORE lookup in Metacat has a syntax issue
I also saw the error when i used morpho 1.10 to insert a package with data:
[ERROR]: org.apache.solr.common.SolrExce...
Jing Tao
01:53 PM Metacat Bug #6516: Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
Metacat indexed a document before it wrote to db. This issue was fixed. Jing Tao
01:51 PM Metacat Bug #6518 (Resolved): Authentication service in Ecogrid only access metacat through http connection
Using the SystemUtil.getMetacatServletUrl to replace the hard-coded "http" in authenciation, put, authenticatedQuery ... Jing Tao
01:48 PM MetacatUI Task #6527 (In Progress): Add Fancybox to the MetacatUI Require.js config
I've added the library to our app, now I will be testing it in Firefox, Chrome, Safari, and IE before I start impleme... Lauren Walker
12:40 PM MetacatUI Task #6527 (Resolved): Add Fancybox to the MetacatUI Require.js config
Lauren Walker
01:05 PM MetacatUI Feature #6528 (Resolved): Add fancybox to the Google map image in the Metadata view
Lauren Walker
12:32 PM MetacatUI Task #6524 (Resolved): Choose a JS lightbox library
I have decided to go with fancybox which an display images, video, HTML, and external webpages if we need to. It can ... Lauren Walker

04/18/2014

03:14 PM MetacatUI Bug #6526 (Resolved): Can't open https://knb.ecoinformatics.org on IE 8
I just installed a Windows 7 (64-bit) in VB on my macbook pro. I tried IE 8 to open https://knb.ecoinformatics.org an... Jing Tao
10:45 AM Morpho Bug #6431: Morpho is frozen when it connects a Metacat running on Ubuntu 12.04
In the Morpho and HttpMessage classes, code that handle variables with null value and exceptions were added. Now it ... Jing Tao

04/17/2014

07:48 PM Metacat Bug #6525 (Closed): Got index already exists error when ran the db upgrade scripts from 2.2.1 to 2.4.1
When I upgraded the metacat on mn-stage-ucsb-1.test.dataone.org, I got the error:
metacat 20140417-19:33:10: [ERRO...
Jing Tao
06:18 PM MetacatUI Task #6524 (Resolved): Choose a JS lightbox library
Lauren Walker
05:31 PM MetacatUI Story #6523 (New): Enhance SEO of MetacatUI
Objective: effective indexing of all of our content by search engines.
Note that this is closely related to ticket...
Lauren Walker
05:05 PM MetacatUI Task #6447 (Closed): Linear scale on Y axis does not adjust when an additional line is added to the chart with a higher count
I think this ticket can be closed, at least until I feel a strong need to have a more dynamic chart -drawing function... Lauren Walker
04:54 PM MetacatUI Bug #6522 (Closed): Charts on the Stats View are rendered twice
When the Stats view is rendered, then navigated to again during the same session (i.e. without reloading the page), ... Lauren Walker
04:42 PM MetacatUI Task #6511 (Rejected): Display a thumbnail of the data images in the search result list
This is a duplicate ticket. Lauren Walker
04:37 PM MetacatUI Feature #6404 (New): Add an API synopsis page that gives a quick overview of the DataONE API and other developer tools.
Lauren Walker
04:35 PM MetacatUI Feature #6521 (Closed): Draw the downloads over time graph by querying the D1 log aggregation service
Lauren Walker
04:18 PM Metacat Bug #6520 (Closed): Metacat indexing the resource map prior to metadata document
When I tested the metacat replication, I got the error in the remote server when i used morpho 1.10 or online regist... Jing Tao
03:07 PM MetacatUI Feature #6519 (Resolved): Format view counts in the search results with commas
Lauren Walker

04/16/2014

05:27 PM MetacatUI Task #6509: Display images in the metadata view
The following formatIds will prompt the UI to display the file in the metadata view:
image/gif
image/jp2
image/j...
Lauren Walker
01:56 PM EML Bug #585 (Closed): internationalization needed in EML
The i18nNonEmptyStringType described above was implemented and released as part of EML 2.1.1 -- closing this ticket a... Matt Jones
01:04 PM MetacatUI Story #6513 (Resolved): Find a geohash JS library to convert geohashes to Lat,Long values
I checked in a geohash JS library that seems to do what we need for MetacatUI -
decode geohashes,
encode lat/lo...
Lauren Walker

04/15/2014

06:20 PM Metacat Bug #6518 (Resolved): Authentication service in Ecogrid only access metacat through http connection
In https://code.ecoinformatics.org/code/seek/trunk/projects/ecogrid/src/org/ecoinformatics/ecogrid/metacat/auth/Metac... Jing Tao
04:28 PM Metacat Bug #6516: Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
Note sure. Just see the issue today. Jing Tao
04:06 PM Metacat Bug #6516: Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
This doesn't look like an Ubuntu issue - does it happen for other 10.04 hosts?
Is it just that indexing is trying ...
ben leinfelder
03:56 PM Metacat Bug #6516 (New): Solr index doesn't work in the remote host in the replication when a host is ubuntu 12.04 and another one is ubuntu 14.04
When I use morpho 1.10 branch to insert a package into a local Metacat, which is ubuntu 14.04, the solr index works f... Jing Tao
04:03 PM Metacat Bug #6517 (Closed): Sanparks FGDC upload does not accept data files

> Hi Ben
> Soorry its me again. Im trying to upload FGDC data into dataknp and it doesnt seem to be working. If I...
ben leinfelder
03:05 PM MetacatUI Feature #6502 (Resolved): Add a dropdown of working group keywords to the Registry form in the NCEAS theme
Lauren Walker
01:24 PM MetacatUI Task #6515 (Resolved): Deploy the NCEAS MetacatUI theme on data.nceas.ucsb.edu
Lauren Walker
12:40 PM MetacatUI Feature #6514 (Resolved): Retrieve facets of the geohashes for all search results and map those facets
Lauren Walker
12:38 PM MetacatUI Story #6513 (Resolved): Find a geohash JS library to convert geohashes to Lat,Long values
Lauren Walker

04/14/2014

03:29 PM MetacatUI Feature #6487 (Resolved): Allow searches on the DataONE CN 
MetacatUI is now completely functional for querying the CN Lauren Walker
03:27 PM MetacatUI Bug #6366 (Resolved): Add the upload date to the result list row citation if pubDate is not in the EML
Lauren Walker
03:23 PM MetacatUI Bug #6503 (Resolved): NaN error for publication date for some results pulled from CN
There are a number of metadata in CN.dataone.org with an indexed pubDate of "20121203-01-01T00:00:00Z" or similar, ca... Lauren Walker
02:57 PM MetacatUI Bug #6506 (Resolved): Facets for autocomplete dropdowns are not returning results from CN endpoint
It looks like 1,000 facets is the sweet spot for displaying a large list of suggestions while remaining fast and res... Lauren Walker
02:42 PM MetacatUI Bug #6506 (In Progress): Facets for autocomplete dropdowns are not returning results from CN endpoint
The error here was that the CN server was returning a JSON text response, so MetacatUI will now specify "json" as an ... Lauren Walker
02:01 PM Metacat Feature #6512 (Rejected): Add brief explanation to Metacat docs for using custom map markers in a custom theme
Since I've implemented a new way to use custom map marker and cluster images for each theme without overriding the D... Lauren Walker
01:16 PM MetacatUI Bug #6507 (Resolved): Titles in the metadataIndex view are displayed when there are no populated fields in that section
Lauren Walker
01:16 PM MetacatUI Feature #6505 (Resolved): Add Google Map image of spatial coverage to MetadataIndex view
Lauren Walker
01:16 PM MetacatUI Bug #6504 (Resolved): Build a "quick view" service in MetacatUI for ids pulled from the CN
This is largely finished, just polishing over the details and a couple bugs. Lauren Walker

04/11/2014

05:57 PM Kepler Bug #6467: data tab no longer works
Okay, the registry is re-enabled on KNB ben leinfelder
04:29 PM Kepler Bug #6467: data tab no longer works
benMac, the registry url doesn't work: https://knb.ecoinformatics.org/registry/services/RegistryService.
I took a ...
Jing Tao
02:12 PM Kepler Bug #6467: data tab no longer works
We could leave ecogrid http open...indefinitely, though that is not our preference. It's not clear how to force peopl... ben leinfelder
02:01 PM Kepler Bug #6467: data tab no longer works
Jing updated the configuration files for ecogrid and reporting. He also found that $HOME/.kepler/cache-2.4/modules/ec... Daniel Crawl
11:34 AM Kepler Bug #6467 (Closed): data tab no longer works
I made a new apache configuration for ecogrid.ecoinformatics.org that does not force a redirect to HTTPS. All KNB tra... ben leinfelder
10:09 AM Kepler Bug #6467: data tab no longer works
I changed ecogrid, repository, and reporting configuration.xml files. I also deleted the configuration files in ~/Kep... Daniel Crawl
09:53 AM Kepler Bug #6467: data tab no longer works
Oh, the configuration.xml in the reporting module has the query service as well. Because of the overwriting mechanism... Jing Tao
09:14 AM Kepler Bug #6467: data tab no longer works
I believe it is the ecogrid module's configuration.xml? Did you change the one in the ~/KeplerData directory? Jing Tao
09:09 AM Kepler Bug #6467: data tab no longer works
Perhaps the "repository" module's configuration.xml file? ben leinfelder
09:02 AM Kepler Bug #6467: data tab no longer works
Where's the service url specified? I tried changing all the URLs in the ecogrid module's configuration.xml to use htt... Daniel Crawl

04/10/2014

04:39 PM MetacatUI Task #6511 (Rejected): Display a thumbnail of the data images in the search result list
This may require a "list view" and "thumbnail view" to switch between or just adding an image to the result list row.... Lauren Walker
03:29 PM MetacatUI Feature #6510 (New): Display embedded videos in the metadata view
Grab video files from the resource map and embed those videos in the metadata view for playing in the browser. Lauren Walker
03:28 PM MetacatUI Task #6509 (Resolved): Display images in the metadata view
Grab image files listed in the resource map and display them in the metadata view. Use a lightbox JS library to creat... Lauren Walker
03:21 PM MetacatUI Bug #6508 (Resolved): The package file contents table renders twice sometimes
Lauren Walker
03:20 PM MetacatUI Bug #6507 (Resolved): Titles in the metadataIndex view are displayed when there are no populated fields in that section
Lauren Walker
03:19 PM MetacatUI Bug #6506 (Resolved): Facets for autocomplete dropdowns are not returning results from CN endpoint
Lauren Walker
03:16 PM MetacatUI Feature #6505 (Resolved): Add Google Map image of spatial coverage to MetadataIndex view
Lauren Walker

04/08/2014

02:50 PM Morpho Bug #6499 (Closed): Morpho doesn't recognize the commercial certificates
Remove the code in morpho to customize the keystore. Now it uses the default one from java vm.
I tested morpho ag...
Jing Tao
12:59 PM MetacatUI Bug #6504 (Resolved): Build a "quick view" service in MetacatUI for ids pulled from the CN
Lauren Walker
12:55 PM MetacatUI Bug #6503 (Resolved): NaN error for publication date for some results pulled from CN
Lauren Walker
10:28 AM MetacatUI Feature #6502 (Resolved): Add a dropdown of working group keywords to the Registry form in the NCEAS theme
Lauren Walker

04/07/2014

04:38 PM MetacatUI Story #6319: Filter spatial data by centroid totally encompassed in the map viewport rather than bounding box encompassed in the map viewport
When the DataONE index is upgraded to include centroid values, MetacatUI can easily filter by centroid using this new... Lauren Walker
04:30 PM MetacatUI Feature #6312 (Rejected): Make it more obvious that only 200 results are being mapped at a time
Since we will be adding geohashes to the Solr index, metacatUI can facet by these and seemingly map all results. Lauren Walker
01:55 PM MetacatUI Bug #6501 (Rejected): Metadata view package contents table does not list "Other Entity" or image files
Nevermind, the data file does not have public read access. :) Lauren Walker
10:12 AM MetacatUI Bug #6501: Metadata view package contents table does not list "Other Entity" or image files
This may actually be an issue with a permissions issue. An example is the data file knb.444.1 on dev.nceas.ucsb.edu w... Lauren Walker
09:53 AM MetacatUI Bug #6501 (Rejected): Metadata view package contents table does not list "Other Entity" or image files
Lauren Walker
01:50 PM MetacatUI Feature #6494 (Resolved): Use a placeholder Google Maps API key value so MetacatUI initially loads ok, but without a map
Lauren Walker
01:29 PM MetacatUI Bug #6497 (Resolved): Javascript FormData object not supported in IE 8 and earlier
I've tested the plugin in IE 8,9,10, Firefox 9+, and Chrome 33 and it works. The plugin only needs to be used when su... Lauren Walker
10:13 AM MetacatUI Bug #6497 (In Progress): Javascript FormData object not supported in IE 8 and earlier
I am currently testing a jQuery plugin called jQuery Form (http://malsup.com/jquery/form/#getting-started) which allo... Lauren Walker
01:26 PM Metacat Bug #6498 (Resolved): entryForm.js throwing errors in IE 8
Added a check for undefined and null objects in the sortTagWithAttributeName function Lauren Walker
 

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