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From 01/27/2009 to 02/25/2009

02/23/2009

06:06 PM Bug #3835 (In Progress): design and implement OAI-PMH compliant harvest subsystem
Metacat's current harvest mechanism works well but is a proprietary system. The Dryad project has proposed to implem... Matt Jones
05:33 PM Bug #3816: Export action doesn't create complete package
Mike,
This Metacat export bug is 1) a regression from prior behavior, and 2) sorely needs fixing for the NCEAS colla...
Matt Jones
11:29 AM Revision 4816 (metacat): Remove initialization of MetacatUtil.buildIndexPaths in test files. This is taken care of in the background now using SystemUtil.getIndexPaths()
daigle

02/20/2009

01:28 PM Revision 4815 (metacat): update workers.properties with more standard ajp13 worker name (not used until apt-get install project)
daigle
11:16 AM Bug #3822: Spatial part of advanced search doesn't work
In include_advancedsearch.jsp, changed the javascript calls to lenght() to be just length (without parens). Michael Daigle
11:13 AM Revision 4814 (metacat): Removed the () from the javascript length functions in the submitRequest function.
daigle
09:58 AM Bug #3833 (Rejected): Advanced search (liveMap) map doesn't display on linux firefox
The map applet in advanced search doesn't display on unbuntu linux running firefox 3. duplicated this on my machine ... Michael Daigle

02/18/2009

04:56 PM Bug #3823: "make" dependency causes build to fail on windows
Does this also prevent installation of the various CGI files that might depend on that make successfully completing? Matt Jones
04:53 PM Bug #3823: "make" dependency causes build to fail on windows
Added a property to build.properties called make.perl.code. Setting this to false will block the cgi make from runni... Michael Daigle
04:49 PM Revision 4813 (metacat): add a build property "make.perl.code" so the cgi make can be turned off in build.xml on machines without make.
daigle
04:37 PM Bug #3826: Remove jdbc properties from build.properties if not needed
Removed database properties from build.properties. Michael Daigle
04:36 PM Bug #3825: indexPaths should be more readable in build.properties
Changed the indexPaths property to be multi-line and alphabetized. Had to modify SortedProperties to read multi-line... Michael Daigle
04:35 PM Bug #3830 (New): Add the ability to modify multi-line properties
Right now, SortedProperties will read a multi-line property, but not modify one. It should be able to modify a multi... Michael Daigle
04:30 PM Revision 4812 (metacat): Format indexPaths in metacat.properties. Remove from build.properties and build.xml. Move indexPath list getter from MetacatUtil to SystemUtil.
daigle
11:31 AM Bug #3777: Move Tomcat libraries into metacat build
Review comments on ticket 3824 Michael Daigle
11:19 AM Bug #3777: Move Tomcat libraries into metacat build
We used to include those libs back in the Tomcat 3 days, but took them out as
the servlet library jars changed in Tom...
Matt Jones
11:30 AM Bug #3824: Normalize the app deploy dir in build.properties
Yeah, makes sense. Unfortunately, there is another domain specific issue (to be solved) which is that the knb websit... Michael Daigle
11:19 AM Bug #3824: Normalize the app deploy dir in build.properties
We used to include those libs back in the Tomcat 3 days, but took them out as
the servlet library jars changed in Tom...
Matt Jones
11:12 AM Bug #3824: Normalize the app deploy dir in build.properties
Referencing ticket 3777 which moves tomcat libs into metacat project and eliminates build.tomcat.dir from build.prope... Michael Daigle
11:09 AM Bug #3824: Normalize the app deploy dir in build.properties
My response:
The problem with 3 A is that the build.tomcat.dir is not necessarily the same as the app.deploy.dir. O...
Michael Daigle

02/17/2009

04:32 PM Bug #3826 (Resolved): Remove jdbc properties from build.properties if not needed
Per Duane Costa:
In build.properties:
The 'database' property and all the 'jdbc' properties
are still in t...
Michael Daigle
04:29 PM Bug #3825 (Resolved): indexPaths should be more readable in build.properties
Per Duane Costa:
In build.properties:
'indexPaths' is an important property, but its value is
very difficult...
Michael Daigle
04:27 PM Bug #3824 (Resolved): Normalize the app deploy dir in build.properties
Per Duane Costa:
in build.properties file:
app.deploy.dir=/usr/local/devtools/jakarta-tomcat/webapps
It wo...
Michael Daigle
04:26 PM Bug #3823 (Resolved): "make" dependency causes build to fail on windows
Per duane costa:
There's a platform dependency on 'make' which is a blocker for building the source distribution o...
Michael Daigle
04:24 PM Bug #3822 (Resolved): Spatial part of advanced search doesn't work
Per Duane Costa:
I tested a number of searches in the 'default' skin and almost everything ran fine. However, the...
Michael Daigle
04:01 PM Revision 4811 (metacat): Replace System.out.println statements with logMetacat statements.
daigle
02:45 PM Revision 4810 (metacat): moved file from metacat/bin to metacat/src/scripts/bash since eclipse uses <project>/bin as a default build directory and these files will consistently get blown away locally by eclipse.
daigle
02:22 PM Revision 4809 (metacat): Replace System.out.println statements with logMetacat statements.
daigle
09:37 AM Bug #3819: Error writing to replication log
Fixed Michael Daigle
09:36 AM Bug #3819 (Resolved): Error writing to replication log
If the replication log directory does not exist, the replication code throws warnings. Changed the PropertyAdmin to ... Michael Daigle
09:32 AM Revision 4808 (metacat): Update replication documentation and fix code so that replication log is available.
daigle
09:30 AM Revision 4807 (metacat): Add troubleshooting instructions for map issues with firefox 3 and safari
daigle
09:29 AM Revision 4806 (metacat): remove semicolon at the end of xml.useFullSchemaValidation property.
daigle
09:28 AM Revision 4805 (metacat): Separate the concept of a backup file location and a metacat external directory location. These can be totally different.
daigle

02/12/2009

02:12 PM Bug #3818: Maps don't load for mac and windows
Windows needed to be rebooted to work.
The mac issues were known issues. Mapbuilder will not work right against f...
Michael Daigle
11:41 AM Bug #3818: Maps don't load for mac and windows
Seeing this in Safari on mac as well Michael Daigle
11:14 AM Bug #3818 (Resolved): Maps don't load for mac and windows
Maps are not loading on mac running firefox 3.0.1 and Win XP running firefox 3.0.6 (those were all we tested so far).... Michael Daigle
09:06 AM Bug #3817: Documents with DTD declarations cannot be inserted
Fixed the DTD registration in the xml_catalog table.
Now just warning about pre-existing DTDs when [re]fetching from ...
ben leinfelder
09:02 AM Bug #3817 (Resolved): Documents with DTD declarations cannot be inserted
Background:
Working with Choonhan Youn at SDSC (cyoun@sdsc.edu): they are developing a skin that makes use of the FG...
ben leinfelder

02/11/2009

05:40 PM Revision 4803 (metacat): Fixes include:
-Overwriting existing DTDs on the filesystem if they exist and registration in the DB failed
-only registering a DTD ...
ben leinfelder
02:52 PM Revision 4802 (metacat): Fix formatting for ecogrid testing section
daigle
02:33 PM Revision 4801 (metacat): Add instructions for how to test the web registry, web ldap, and ecogrid registry service.
daigle
10:36 AM Bug #3814: Backed up directories are not getting read during configuration
fixed on bug 3813 Michael Daigle
10:36 AM Bug #3813: Local save of backup location is not being written
Made sure a local file was written to the user's home directory. The file is at <user_home>/.<application_context> Michael Daigle

02/10/2009

05:25 PM Revision 4800 (metacat): do not include the column name when inserting into an auto-increment column
ben leinfelder
04:50 PM Revision 4799 (metacat): Make sure and write the shortcut to the backup directory to a directory in the users home.
daigle
01:05 PM Bug #3815: Ampersand character not correctly encoded
Register-dataset.cgi may not have any testing itself, but it is based on Metacat.pm which does have a test suite in t... Matt Jones
12:33 PM Bug #3815: Ampersand character not correctly encoded
To properly fix this bug, we'll need to add tests for character conversions, to make sure that we aren't introducing ... Shaun Walbridge
12:36 PM Bug #3816: Export action doesn't create complete package
Add an explicit test for this action, by uploading a new document with associated files, then downloading the resulti... Shaun Walbridge
11:45 AM Bug #3812: Registry service will fail when registering new services
Updated the MetacatImpl.xml build file in seek to include the ecogrid registry service xml schema files. Added the s... Michael Daigle
08:59 AM Revision 4798 (metacat): Prepend the web application name to the log message.
daigle

02/09/2009

06:02 PM Bug #3816 (Closed): Export action doesn't create complete package
When using the export action, two bugs are noticeable:
1. Documents with associated data tables have files with t...
Shaun Walbridge
05:35 PM Bug #3815 (Resolved): Ampersand character not correctly encoded
Ampersands are encoded as "&amp;" within register-dataset.cgi in normalize(), but documents uploaded have a "%26amp;"... Shaun Walbridge
05:16 PM Bug #3814 (Resolved): Backed up directories are not getting read during configuration
Once metacat is configured after the initial installation, the configured values should be saved. The global propert... Michael Daigle
05:05 PM Bug #3813 (Resolved): Local save of backup location is not being written
If the tomcat user has a home directory, a file should get written to it in ~/.metacat/<application>_backup_location.... Michael Daigle
03:01 PM Revision 4797 (metacat): Add the service registration xml schema to the database. The ecogrid build will add the schema files to the application (see seek)
daigle

02/07/2009

03:17 PM Bug #3811: Spatial caches should be backed up and restored
Matt Perry and I discussed having them be located outside of the knb context dir many times. We both agreed it was a... Matt Jones

02/06/2009

03:07 PM Bug #3812 (Resolved): Registry service will fail when registering new services
The xml used to register a new registry service will fail because the schema location does not exist and we validate ... Michael Daigle
01:50 PM Bug #3811 (Resolved): Spatial caches should be backed up and restored
Right now it takes over 40 minutes for the spacial caches to be generated every time metacat is upgraded on knb. The... Michael Daigle
01:46 PM Bug #3806: Multiple instances of metacat will try to back up configuration to the same directory
Changed the configuration to back up properties to a subdirectory named for the context. Michael Daigle
11:45 AM Revision 4796 (metacat): use "prompt" xpath that matches current QTI serialization
ben leinfelder

02/03/2009

04:01 PM Revision 4795 (metacat): Allow for backup properties to be written to context based subdirectory of the external configuration directory. This allow multiple instances of metacat to be run side by side.
daigle
03:58 PM Revision 4794 (metacat): Moved ecogrid hostname to build.properties
daigle

02/02/2009

03:12 PM Bug #3806 (Resolved): Multiple instances of metacat will try to back up configuration to the same directory
When metacat autodiscovers the backup directories, it will find the same directory for multiple instances of metacat ... Michael Daigle

01/29/2009

02:15 PM Revision 4792 (metacat): handle case when there is a single question on the assessment
ben leinfelder
02:14 PM Revision 4791 (metacat): correct spelling of "Assessment"
ben leinfelder
11:10 AM Bug #3784: Docs don't drop off of esa moderator's list once they are approved
Changed the xml access paths to reflect EML 2.1.0, adding the 2.1.0 paths to indexing and changing the paths for quer... Michael Daigle
09:15 AM Bug #3784 (Resolved): Docs don't drop off of esa moderator's list once they are approved
The doc keeps showing up even after the moderator approves it. It looks like the query to get the moderators list is... Michael Daigle
11:06 AM Revision 4790 (metacat): Update xml paths for 2.1.0 access structure. Added the 2.1.0 path for indexing. Changed from 2.0 to 2.1.0 for querying.
daigle
10:15 AM Revision 4789 (metacat): Add a short sleep when moderator accepts document so system can update. This will make sure correct documents get returned to moderators list.
daigle
10:12 AM Revision 4788 (metacat): Remove moderators from esa skin configuration. This is currently handled via global configuration in metacat.properties
daigle
09:13 AM Bug #3781: Add admin user/password configuration to esa skin configuration
Added user/password configuration. Also removed moderator configuration from skin since we currently use the auth.mo... Michael Daigle

01/28/2009

05:16 PM Revision 4787 (metacat): change "blah blah" to something more respectable
ben leinfelder
10:15 AM Bug #3783 (New): Optimize ESA moderator queries
The queries used to get information for ESA moderators are very slow. They may work fine against a limited db (like ... Michael Daigle

01/27/2009

04:46 PM Revision 4786 (metacat): Add admin email to the esa skin configuration
daigle
04:31 PM Revision 4785 (metacat): Change name of writeTempFile to writeTempUploadFile since this instance deals with the temporary upload dir specifically
daigle
04:29 PM Revision 4784 (metacat): Make esa admin user and password configurable
daigle
03:31 PM Bug #3781 (Resolved): Add admin user/password configuration to esa skin configuration
ESA uses and admin account when datasets are registered. This needs to be configurable in the esa skin config. This... Michael Daigle
11:22 AM Revision 4783 (metacat): fix javascript image references with contextUrl
walbridge
10:31 AM Bug #3780: Register dataset with data file fails on saeon skin
Changed the MetacatUtil.writeTempFile to write to an "upload" temp directory to avoid conflicts with the registry code. Michael Daigle
08:36 AM Bug #3780 (Resolved): Register dataset with data file fails on saeon skin
Registering a data set on the saeon skin with a data file fails. It comes back with the following error: "Failed to ... Michael Daigle
10:28 AM Revision 4782 (metacat): Added exception to error xml to clarify error to api.
daigle
10:27 AM Revision 4781 (metacat): writeTempFile was trying to write the same file as the registry. Changed to write the file to an "upload" subdirectory. Also throws IOException so errors get reported back to api.
daigle
 

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