Activity
From 11/09/2011 to 12/08/2011
12/08/2011
- 04:15 PM Bug #5523: setting authoritative MN and rightsHolder for KNB data on conversion
- On further reflection, I think we might only want to be generating SystemMetadata for objects that were added directl...
- 03:13 PM Bug #5523: setting authoritative MN and rightsHolder for KNB data on conversion
- We can certainly find out our local KNB MN Id since it will be configured, but I'm not sure how we would go about def...
- 04:10 PM Bug #5244: ldapweb.cgi shouldn't report ou=Account accounts since they're unusable
- Used Jing's test server to verify that ou=Account entries were not shown.
http://chico1.dyndns.org/knb/cgi-bin/ldapwe... - 03:52 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
- Items I am suspicious about:
2(c)(i) -- Generating new objects from external data (URLs) that metadata points to. The... - 02:44 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
- No, it is not. I haven't update your code yet.
I figured it out somehow the search result was cached even the querie... - 02:17 PM Bug #5566: Click View Run link get 0 result if user doesn't login on the sanparks skin
- Do you think this is because of the new permission handling in Metacat?
The change I just made to trunk means that e...
12/07/2011
- 02:42 PM Bug #5566 (Resolved): Click View Run link get 0 result if user doesn't login on the sanparks skin
- On the sanparks skin, if you click the TPC workflows link, you will get a list of workflows. There are three actions ...
- 01:12 PM Bug #5544: the footer of the output page after clicking TPC status/workflow can't be read on Sanparks skin
- It turns out that the TPC workflow/status use another set of css and jsp files. I use the the way of home page to rep...
12/06/2011
- 03:48 PM Bug #5563 (Resolved): Kepler can't get search result from metacat 2.0.0
- I used kepler 2.3 to do a % query against a metacat which was built from the trunk. It didn't show any result. Actual...
12/05/2011
- 09:02 AM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- Hi, Ben:
I just tried and the sql error has gone. Thanks!
However, it seems that all worklfow and run kar files are...
12/02/2011
- 05:36 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- One problem was that the predicate expression was incorrectly escaping the predicate quotes -- now that they are prep...
- 04:23 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- The parameterValues is:
[karEntry/karEntryAttributes/tpcStatus, mainAttributes/lsid, karEntry/karEntryAttributes/Name... - 04:22 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- The sql statement is:
select xml_nodes.docid, xml_index.path, xml_nodes.nodedata, xml_nodes.parentnodeid, xml_nodes.... - 04:21 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- The pathquery doesn't work:
<pathquery version='1.2'><returndoctype>http://www.kepler-project.org/kar-2.0.0</returndo... - 04:19 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- Okay. It turned out the query on comment 2 does work.
- 03:39 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- i added a printStatckTrace statement and it gave me this:
at org.postgresql.core.v3.SimpleParameterList.bind(SimplePa... - 03:36 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
- actually, it is not only for the sanpark skin. This query will cause same issue:
<?xml version="1.0"?>
<pathquery ver... - 10:31 AM Bug #5561 (Resolved): Got a SQL error when click TPC workflows or TPC link on sanparks skin
- Clicked TPC status, I saw:
knb 20111202-10:30:51: [ERROR]: DBQuery.createResultDocument - SQL Error: The column in... - 11:28 AM Bug #5562: Got an NPE when upgrade db from 1.9.5 to 2.0.0
- it was possible to have a null prepared statement if there were no data values to convert to dates -- now checking fo...
- 11:23 AM Bug #5562 (Resolved): Got an NPE when upgrade db from 1.9.5 to 2.0.0
- knb 20111202-11:20:14: [ERROR]: SkinsAdmin.configureSkins - Could not find properties for skin: semtools [edu.ucsb.nc...
- 11:25 AM Bug #5560: Upgrade access control rules in Metacat DB
- By removing the 'docid' column from the 'xml_access' table, we introduce a huge amount of refactoring -- the custom E...
- 09:02 AM Bug #5560 (Resolved): Upgrade access control rules in Metacat DB
- Metacat handles a single access control policy for ALL revisions of an object whereas DataONE allows different access...
12/01/2011
- 04:34 PM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
- If you login on the sanparks home page, you will get the login form when you click Register Data link. It seems that ...
- 03:43 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
- Use accessBlock parameter on setaccess action to replace the original access rules by the new access rules. The new a...
- 12:29 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
- Disregard the Xerces panic -- I had an old XercesImpl.jar hanging out in my classpath.
11/30/2011
- 01:06 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
- Using the Foresite library in Metacat to build the ORE maps fails because of jar dependencies. The dependencies are a...
11/29/2011
- 09:46 AM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
- reopen this bug since ben added a comment on bug 5553:
There is currently a method in Metacat's access API that allo... - 09:38 AM Bug #5553: setaccess action may have deleting access rule functionality
- Sounds like we can use it. However, we have to parse the returned result of action=getaccesscontrol in order to prese...
- 09:16 AM Bug #5553: setaccess action may have deleting access rule functionality
- There is currently a method in Metacat's access API that allows you to set the entire access block for a given docume...
11/28/2011
- 04:53 PM Bug #5553: setaccess action may have deleting access rule functionality
- When this bug is fixed, we should reopen the bug 5551:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5551 - 04:53 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
- Now we had temporary solution for set/revoke public readable access:
user can grant public access to a document, then... - 02:36 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
- For the issue on comment 4, I found the clientViewBean object wasn't set sesssion id in ClientViewHelper.java. After ...
11/23/2011
- 02:55 PM Bug #5553 (New): setaccess action may have deleting access rule functionality
- Currently, setaccess action can only add access rules to the metacat. There is a limitation.
Sometimes, we want to... - 02:48 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
- Also i noticed after set the access, the delete, update and set access button disappeared. Only download button can b...
- 02:36 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
- Since "setaccess" action can add access rules, this will cause problem.
Since the documents' allow rules for public r... - 02:23 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
- To a none-public readable document, if we click the set access button with the checked public read check box, the doc...
- 01:59 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
- The kepler_kepler_21 is a FGDC document with the public readable access rule. Here is the record on xml_access:
keple... - 11:09 AM Bug #5551 (Resolved): Set public access button on the FGDC document display page doesn't work (on sanparks skin).
- When I tried to grant a public readable access to a nonpublic readable document, i got an error:
User public does n... - 01:07 PM Bug #5537: Move replication control panel to /admin servlet
- There is now a separate /admin screen for replication configuration. Now /replication can require SSL client certific...
- 11:00 AM Bug #5530: Sanparks skin shows update and delete action when user public reads a FGDC package
- Ben:
Okay. This is the current behavior. I am going to close the bug. - 10:44 AM Bug #5530: Sanparks skin shows update and delete action when user public reads a FGDC package
- I think the checkbox should reflect the current state of the document. If it is unchecked, that indicates that it is ...
11/22/2011
- 05:10 PM Bug #5530: Sanparks skin shows update and delete action when user public reads a FGDC package
- If fgdc-root.xsl, it has the control to display the buttons or not. The control is the parameter "enableFGDCediting"....
11/21/2011
- 02:22 PM Bug #5548 (New): Replace COS Mime multipart library
- Here is a comment from Matt in bug 5543:
The COS Mime multipart library is incredibly old, and we should
seriousl... - 02:20 PM Bug #5543: Can't upload a FGDC metadata file with a data file in SANParks skin
- Ben committed a new version of cos.jar file and modified the MetacatClient.java to handle the file size being -1. In ...
- 11:33 AM Bug #5543: Can't upload a FGDC metadata file with a data file in SANParks skin
- We may not even have to require a known size -- Metacat isn't storing that information. Sure, the new DataONE apis us...
- 10:17 AM Bug #5547 (New): Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
- When you click "Register Data" tab on Sanparks skin, it will show a login form if you haven't login. However, it will...
11/18/2011
- 07:51 PM Bug #5543: Can't upload a FGDC metadata file with a data file in SANParks skin
- Jing --
I'm not sure what the right solution is here, but here are some thoughts. First, trying to get the length o... - 05:58 PM Bug #5543: Can't upload a FGDC metadata file with a data file in SANParks skin
- After dug around the code, i figured out the problem is at the CoientViewHelper.java.
In handlePackageUpload method,...
11/17/2011
- 04:04 PM Bug #4728: grant document management privileges to admin user
- Admin user[s] now have complete control of the Metacata data and metadata. The list of items here (1-6) are covered n...
- 02:40 PM Bug #5544 (Resolved): the footer of the output page after clicking TPC status/workflow can't be read on Sanparks skin
- The text of the footer of the output page is black and can be read when a user click TPC workflow/status menu.
- 02:31 PM Bug #5542: Data Package Upload form in SANParks skin missing the description text
- In footer, set some text to be regwhitetext. So everything looks fine.
- 02:30 PM Bug #5542: Data Package Upload form in SANParks skin missing the description text
- The text was not missing, but its color was white and couldn't be read.
The regtext class in sanparks.css was set:
.... - 12:03 PM Bug #5533: Sanpark skin main page has login issue
- For the first issue that a user could not log in on IE, the reason is IE invalid the login form after a div, which co...
11/16/2011
- 02:55 PM Bug #5543 (Resolved): Can't upload a FGDC metadata file with a data file in SANParks skin
- I tried to use the data package upload form to upload a FGDC file, it succeeded. However, if i uploaded a FGDC file w...
- 02:45 PM Bug #5542 (Resolved): Data Package Upload form in SANParks skin missing the description text
- It misses the text like:
Enter the Meta Data File (*.xml)
Enter Data File 1 (*.shp)
Enter Data File 2 (*.dbf)
....
11/15/2011
- 01:30 AM Bug #5513: add support for DOI identifiers from EZID
- I created a new library called 'ezid' in its own project that can be used to access the EZID REST services from withi...
11/11/2011
- 09:10 AM Bug #5537 (Resolved): Move replication control panel to /admin servlet
- Instead of using the SSL client certificate secured /replication servlet to administer replication settings via the w...
- 09:00 AM Bug #5531: Remove/make optional the DataONE MN registration that occurs during Metacat configuration
- There is now a separate admin configuration screen for dataone:
-you can bypass it in the same way you can bypass geo...
11/09/2011
- 03:19 PM Bug #5353: EcogridWriter doesn't work with the metacat built from trunk.
- Both Jing and I were unable to replicate this bug testing against a more recent Metacat trunk build
- 02:56 PM Bug #5353: EcogridWriter doesn't work with the metacat built from trunk.
- I tried this out with Kepler 2.1, writing sample EML 2.0.0 and EML 2.1.0 metadata (and data files). All worked out fi...
- 12:14 PM Bug #5353: EcogridWriter doesn't work with the metacat built from trunk.
- Is there a sample Kepler workflow we can use to debug this?
- 02:28 PM Bug #3815: Ampersand character not correctly encoded
- I just tried the registry on a test machine running most recent Metacat trunk and the ampersand was correctly encoded...
- 12:47 PM Bug #5536: Restore replicated data files that are 0 bytes
- Matt suggests an alternative approach: delete the files and the DB records for those files so that the next timed rep...
- 12:23 PM Bug #5536 (Resolved): Restore replicated data files that are 0 bytes
- Due to a replication bug, some data files were not replicated fully. These should be tracked down and restored.
- 12:44 PM Bug #4405: PISCO, KNB and LTER have different query result for SBC datasets.
- Running the query against the PISCO server returned the expected 14 records.
- 12:33 PM Bug #5532: Use strict build tag strategy for 2.0.0 release
- Looks good to me.
- 12:31 PM Bug #5532: Use strict build tag strategy for 2.0.0 release
- Proposed tags. Please comment.
-eml schema 2.1.1 (tags/RELEASE_EML_2_1_1)
-eml style sheets (tags/RELEASE_EML_UTILS_1... - 12:22 PM Bug #5519: Replicated data files are 0 bytes
- This is fixed. We just need to figure out the files that have not replicated successfully. Any 0-length files on KNB ...
- 12:20 PM Bug #3811: Spatial caches should be backed up and restored
- The final step in the process should be to _NOT_ regenerate the spatial cache during 2.0 configuration.
- 12:13 PM Bug #5288: Metacat got "java.lang.OutOfMemoryError: PermGen space" after new geoserver update
- added to word doc
- 12:03 PM Bug #5513: add support for DOI identifiers from EZID
- I've managed to get UCSB to agree to pay for an EZID account from CDL that we'll be able to use to programatically as...
- 10:31 AM Bug #5535 (New): The 611 CDR documents replicated to KNB need to be repaired by fixing their inline data.
- This bug is the section 4 of the ongoing concerns:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=3296
During... - 09:59 AM Bug #5534 (Resolved): Replication log somehow doesn't work.
- Metacat logged the some important replication information into the metacatreplication.log file which stays in the dir...
- 09:41 AM Bug #3296: Replication: Many EML documents fail to replicate
- Follow-up to the previous comment of 2008-06-05:
1. There are still 94 documents that fail to replicate. These are a...
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