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From 06/27/2013 to 07/26/2013

07/26/2013

12:14 PM Feature #5939 (Closed): Create view service that can render metadata documents at REST URL
This is done now - both the backend service and the front end JS that ties it all together at #view/{pid} ben leinfelder
12:07 PM Revision 8083 (metacat): download arrow on right side
ben leinfelder
12:06 PM Revision 8082 (metacat): remove "Package" from the default button, only use it when we have an ORE map id.
ben leinfelder
11:37 AM Revision 8081 (metacat): give the div that holds the download package button an id attribute so that we can dynamically change the content in there if/when we know the ORE map id instead of the EML id. https://projects.ecoinformatics.org/ecoinfo/issues/5948
ben leinfelder
05:12 PM Task #6040: Metacat-index does not handle <references>
Here is a bit of the bean definition used by indexing to pick out the content from EML... ben leinfelder
05:01 PM Task #6040 (New): Metacat-index does not handle <references>
I indexed a document from EVOS that uses a reference for a creator rather than the details of the person:... ben leinfelder

07/25/2013

04:51 PM Revision 8080 (metacat): do not use #none for the accordian control in method section
ben leinfelder
04:49 PM Revision 8079 (metacat): when 'printall' we should show the attribute coverage and method information, not a link to it
ben leinfelder
04:35 PM Revision 8078 (metacat): when 'printall' we should show the enumeratedDomain of a measurement.
ben leinfelder
03:55 PM Revision 8077 (metacat): use 'printall' option for the EML display - metacatui will scroll and navigate through all the metadata and has tabified the entity/attribute info. https://projects.ecoinformatics.org/ecoinfo/issues/5948
ben leinfelder
03:53 PM Revision 8076 (metacat): use glyph download icon, not a /knb/style/images path to an image (ugh!)
ben leinfelder
01:16 PM Revision 8075 (metacat): include user's fullName when validating a session. also, allow cookie session to be used if not passed in directly as a parameter
ben leinfelder
08:58 AM Bug #6039 (Resolved): Metacat-index can't handle the metacat which doesn't have the name as "knb"
In the PropertiesAdmin.java class in the Metacat, we add the code to modify the value in the Metacat-index. When user... Jing Tao
06:12 PM Revision 8074 (metacat): Add code to modify the web.xml in metacat-index context if the metacat's name is not knb.
Jing Tao

07/24/2013

04:12 PM Bug #6039 (Resolved): Metacat-index can't handle the metacat which doesn't have the name as "knb"
In the web.xml of the metacat-index context, it has a parameter to locate the metacat's metacat.properties file. Its ... Jing Tao

07/23/2013

02:24 PM Revision 8073 (metacat): move Login header to container, not the fluid span.
ben leinfelder
08:49 AM Revision 8072 (metacat): handle <references> element in <creator> for the citation.
ben leinfelder

07/22/2013

04:59 PM Revision 8071 (metacat): use #view/{pid} pattern for the citation link, and then /object/{pid} for the XML download -- so no old Metacat API calls show in the rendered EML.
ben leinfelder
03:50 PM Revision 8070 (metacat): use the v1.1.2 d1-cn-index-processor
ben leinfelder
03:48 PM Revision 8069 (metacat): use the v1.1.x branch ResourceMap class for metacat-index
ben leinfelder
02:02 PM Revision 8068 (metacat): remove the actual href
ben leinfelder
01:58 PM Revision 8067 (metacat): enable listening to the "register another package" link
ben leinfelder
01:35 PM Revision 8066 (metacat): soften the failure page ("Whoops!")
ben leinfelder
01:32 PM Revision 8065 (metacat): remove note about reloading the guide page -- it ain't a page anymore!
ben leinfelder
12:46 PM Revision 8064 (metacat): switch where Registry Guide modal header is defined
ben leinfelder
12:30 PM Revision 8063 (metacat): convert all ? links to launch the modal window
ben leinfelder
12:22 PM Revision 8062 (metacat): use larger modal
ben leinfelder
12:13 PM Revision 8061 (metacat): add space to modal header to preserve vertical format
ben leinfelder
12:12 PM Revision 8060 (metacat): clean up guide header
ben leinfelder
12:09 PM Revision 8059 (metacat): clean up the modal guide - finally working. except for the section #anchors
ben leinfelder
12:00 PM Revision 8058 (metacat): move the modal div out of the containing sections to display properly
ben leinfelder
11:54 AM Revision 8057 (metacat): static loading of the guide
ben leinfelder
11:52 AM Revision 8056 (metacat): why cna't I load the guide?
ben leinfelder
11:38 AM Revision 8055 (metacat): does order matter?
ben leinfelder
11:36 AM Revision 8054 (metacat): grasping now
ben leinfelder
11:31 AM Revision 8053 (metacat): ad role="button" attribute
ben leinfelder
11:29 AM Revision 8052 (metacat): remove data-remote
ben leinfelder
11:17 AM Revision 8051 (metacat): use data-remote=true to load contents from url
ben leinfelder
11:14 AM Revision 8050 (metacat): rely on bootstrap to trigger the modal box
ben leinfelder
10:42 AM Revision 8049 (metacat): make remote=true for the modal dialog
ben leinfelder
10:39 AM Revision 8048 (metacat): more modal work...
ben leinfelder
10:30 AM Revision 8047 (metacat): try modal help window to load the guide section
ben leinfelder
09:29 AM Revision 8046 (metacat): remove the footer that (i swear) was hiding
ben leinfelder
09:25 AM Revision 8045 (metacat): do not load login.js since requirejs will do it for us
ben leinfelder
09:00 AM Revision 8044 (metacat): prep for ajax/metacatui use of login form
ben leinfelder

07/21/2013

02:44 PM Revision 8043 (metacat): use hidden field for the dataWrong parameter
ben leinfelder
02:40 PM Revision 8042 (metacat): settle on yes/no confirm buttons
ben leinfelder
02:08 PM Revision 8041 (metacat): use RegistryView listeners for the form submission process
ben leinfelder
01:58 PM Revision 8040 (metacat): use consistent article id="RegistryXXX" patterns for css.
ben leinfelder
01:51 PM Revision 8039 (metacat): remove header/footer from registry response for ajax inclusion.
ben leinfelder
01:42 PM Revision 8038 (metacat): use event listening in the RegistryView to submit the form.
ben leinfelder
01:25 PM Revision 8037 (metacat): submit form via ajax
ben leinfelder
01:23 PM Revision 8036 (metacat): remove the header and footer so the registry form can be loaded via ajax into an existing dom.
ben leinfelder

07/20/2013

05:22 PM Bug #6038 (New): In the systemmetadata table on the dev2 machine, some guids have archvied=false and obsoleted_by= null, but the guids are the values of obsoletes of the other rows.
knb=> select archived, obsoleted_by from systemmetadata where guid='nikkis.27.1';
archived | obsoleted_by
-------...
Jing Tao
05:19 PM Bug #6035 (Rejected): The system metadata table in a Metacat was messed up with the value of archived
Jing Tao

07/19/2013

09:08 AM Revision 8035 (metacat): The exceptions will be caught during the looping of deleting the solr index.
Jing Tao

07/18/2013

02:49 PM Revision 8034 (metacat): include filename in the package download, though we can;t really use the PID because of all the potential characters in it that are not valid for filesystems.
ben leinfelder
02:28 PM Revision 8033 (metacat): remove all table/tr/td/ use. clean up the data distribution area.
ben leinfelder
02:27 PM Revision 8032 (metacat): include $pid parameter and views/package endpoints instead of metacat API urls. Note that some links still exist for rendering portions of the EML (additionalMetadata and attribute details).
ben leinfelder
12:54 PM Revision 8031 (metacat): use <article id="Metadata"/> for the rendered EML and FGDC sections to make client-side consumption easier/more generic.
ben leinfelder
12:53 PM Revision 8030 (metacat): first pass at FGDC reformatting for metacatui look and feel.
ben leinfelder
11:55 AM Revision 8029 (metacat): do not squash on eml-physical.xsl definition of the template match="citation" by using a named template for fgdc.
ben leinfelder
10:53 AM Revision 8028 (metacat): type the doctype="metadata" objects as "FGDC-STD-001-1998" formatId for rendering XSLT and for DataONE SystemMetadata.
ben leinfelder
09:06 AM Revision 8027 (metacat): Remove the code to write some debug information into a temporary file.
Jing Tao
08:39 AM Task #6004 (Resolved): Figure out why there are only 422 documents indexed in mn-demo-4.test.dataone.org
I tried 3 times for indexing by the EmbeddedSolrServer, the results always showed there are 337 documents, which is c... Jing Tao
08:13 AM Revision 8026 (metacat): use custom FileInputStream subclass to delete the temporary bagit zip when the inputstream is closed (after someone has downloaded the zip).
ben leinfelder
08:02 AM Revision 8025 (metacat): use ObjectFormatCache instead of ObjectFormatService because we are not calling it as a CN.
ben leinfelder
07:49 AM Revision 8024 (metacat): copy fgdc xsl from common - start metacatui reformatting
ben leinfelder

07/17/2013

03:48 PM Revision 8023 (metacat): Use the ResourceMapFactory rather than the ResourceMap constructor to build a resource map.
Jing Tao
03:33 PM Revision 8022 (metacat): rollback: we do want to use 1.2.0-SNAPSHOT from d1 indexing.
ben leinfelder
12:03 PM Revision 8021 (metacat): retrieve MetacatUI project from github (requires client has git installed!) and build into the "metacatui" skin during the war process. https://projects.ecoinformatics.org/ecoinfo/issues/6020
ben leinfelder
11:59 AM Revision 8020 (metacat): allow running the Harvester client without a source code checkout. (D. Blankman comments)
ben leinfelder
11:59 AM Revision 8019 (metacat): remove unused resources from metacatui skin
ben leinfelder
11:35 AM Revision 8018 (metacat): allow running the Harvester client without a source code checkout. (D. Blankman comments)
ben leinfelder
11:33 AM Revision 8017 (metacat): Write the ids from metacat into a temporary file.
Jing Tao
10:04 AM Revision 8016 (metacat): move harvest registration page to the default skin, not the KNB skin. update docs to indicate such. (based on comments by D. Blankman)
ben leinfelder

07/16/2013

04:39 PM Revision 8015 (metacat): use <p> for thesaurus above the table of keywords
ben leinfelder
04:21 PM Revision 8014 (metacat): include the localid when rendering the view (used in stylesheets)
ben leinfelder
04:05 PM Revision 8013 (metacat): use ObjectFormatCache.getInstance().getFormat() instead of the CN service (the MN does not typically act as a CN!)
ben leinfelder
03:11 PM Revision 8012 (metacat): use "controls" class on Web Address
ben leinfelder
03:00 PM Revision 8011 (metacat): use tagged version of cn-index-processor library
ben leinfelder
02:36 PM Revision 8010 (metacat): render keywords + thesaurus in a table structure
ben leinfelder
02:16 PM Revision 8009 (metacat): use <strong> for title rendering.
ben leinfelder
02:01 PM Revision 8008 (metacat): remove more ":" after labels
ben leinfelder
01:54 PM Revision 8007 (metacat): remove all table/tr/ cruft that is not used in main layout.
ben leinfelder
01:53 PM Revision 8006 (metacat): reformat attribute enumerated domain.
ben leinfelder
01:17 PM Revision 8005 (metacat): use "UTF-8" instead of encoding="iso-8859-1"
ben leinfelder
01:14 PM Revision 8004 (metacat): use "controls" class for common name element value
ben leinfelder
01:13 PM Revision 8003 (metacat): do not use ":" after labels.
ben leinfelder
01:10 PM Revision 8002 (metacat): remove all table/tr/td use
ben leinfelder
01:01 PM Revision 8001 (metacat): clean up detail tables for measurement type/scale/codes sections
ben leinfelder
12:10 PM Revision 8000 (metacat): render attributeList with side-bar navigation tabs for each attribute.
ben leinfelder
10:44 AM Revision 7999 (metacat): group the physical and distribution details together.
ben leinfelder
10:35 AM Revision 7998 (metacat): save point before tackling attribute list and other re-org in entity view
ben leinfelder
10:21 AM Revision 7997 (metacat): reformat physical/distribution/format sections of the entity display. https://projects.ecoinformatics.org/ecoinfo/issues/6037
ben leinfelder
09:02 AM Revision 7996 (metacat): reformat access control section (even though this will be replaced with SystemMetadata information). https://projects.ecoinformatics.org/ecoinfo/issues/6037
ben leinfelder
08:40 AM Revision 7995 (metacat): reformat usage rights
ben leinfelder
08:34 AM Revision 7994 (metacat): remove all tr/td elements in favor of divs
ben leinfelder
07:10 PM Revision 7993 (metacat): save point with Methods/protocol restyling - still some nested rendering to handle, but mostly accordianized. https://projects.ecoinformatics.org/ecoinfo/issues/6037
ben leinfelder
05:44 PM Revision 7992 (metacat): style all coverage fields w/o tables. https://projects.ecoinformatics.org/ecoinfo/issues/6037
ben leinfelder
05:43 PM Revision 7991 (metacat): comment out the general coverage/context header (will be anchor eventually)
ben leinfelder

07/15/2013

03:59 PM Revision 7990 (metacat): eliminate all table, tr, and td tags in favor of <div>s or <label>s
ben leinfelder
03:31 PM Revision 7989 (metacat): style all other people entries. https://projects.ecoinformatics.org/ecoinfo/issues/6037
ben leinfelder
03:12 PM Revision 7988 (metacat): style Creators. https://projects.ecoinformatics.org/ecoinfo/issues/6037
ben leinfelder
02:17 PM Revision 7987 (metacat): save point: use "fake" input areas (wells) for the value in name/value pairs.
ben leinfelder
12:54 PM Revision 7986 (metacat): save point: reformat the General section
ben leinfelder
11:22 AM Revision 7985 (metacat): style citation in a "well". https://projects.ecoinformatics.org/ecoinfo/issues/6037
ben leinfelder
10:56 AM Revision 7984 (metacat): add slash for harvesterRegistration redirect.
ben leinfelder
10:38 AM Revision 7983 (metacat): starting point for new KNB EML stylesheets (no tables--fluid divs...). copied the existing EML XSLs, will go from there. https://projects.ecoinformatics.org/ecoinfo/issues/6037
ben leinfelder
10:37 AM Revision 7982 (metacat)
ben leinfelder
10:32 AM Revision 7981 (metacat): starting point for new KNB EML stylesheets (no tables--fluid divs...). copied the existing EML XSLs, will go from there. https://projects.ecoinformatics.org/ecoinfo/issues/6037
ben leinfelder

07/13/2013

04:00 PM Revision 7980 (metacat): For inline anchors, embed the anchor in the heading, which will help in selecting these in CSS for styling with a fixed navbar and header.
Chris Jones
06:44 PM Revision 7979 (metacat): call doc head template
ben leinfelder
06:42 PM Revision 7978 (metacat): remove DOCTYPE
ben leinfelder
06:39 PM Revision 7977 (metacat): first pass at metacat servlet rendering new look and feel - will be awful since it uses the EML style sheets as is, but I am curious to see it in action.
ben leinfelder
06:39 PM Revision 7976 (metacat): first pass at metacat servlet rendering new look and feel - will be awful since it uses the EML style sheets as is, but I am curious to see it in action.
ben leinfelder
05:59 PM Feature #6031: Add rendered metadata to Bagit package contents
Moving to later release target so we can focus on other things first. ben leinfelder
05:56 PM Revision 7975 (metacat): Add a solr-home-dri for the http solr server.
Jing Tao
05:53 PM Revision 7974 (metacat): use correct anchor in guide for data upload section
ben leinfelder
05:51 PM Revision 7973 (metacat): add section for data file upload to the guide
ben leinfelder
05:37 PM Revision 7972 (metacat): use "span8" instead of "input-block-level" for textarea inputs
ben leinfelder
05:25 PM Task #6004: Figure out why there are only 422 documents indexed in mn-demo-4.test.dataone.org
Using the http solr server, the Metacat-index still indexed 337 documents which is less than 340. The 3 documents wer... Jing Tao
05:24 PM Revision 7971 (metacat): use 100% width table for methods paragraphs
ben leinfelder
05:21 PM Revision 7970 (metacat): missed a couple: use class="input-block-level" for large textarea inputs
ben leinfelder
05:17 PM Revision 7969 (metacat): use class="input-block-level" for large textarea inputs
ben leinfelder
05:10 PM Revision 7968 (metacat): add "addXXX" tr for sorting to work, or at least not throw an exception on submit()
ben leinfelder
05:04 PM Revision 7967 (metacat): add "addAssociatedParty" tr for sorting to work, or at least not throw an exception on submit()
ben leinfelder

07/12/2013

04:53 PM Revision 7966 (metacat): add class="btn" to all buttons (bootstrap look and feel)
ben leinfelder
04:45 PM Revision 7965 (metacat): remove the comment about taxarow place holder -- DOM manipulation assumes there is none....
ben leinfelder
04:39 PM Revision 7964 (metacat): remove double quotes
ben leinfelder
04:38 PM Revision 7963 (metacat): syntax error?
ben leinfelder
04:36 PM Revision 7962 (metacat): use correct icon for taxon removal
ben leinfelder
04:34 PM Revision 7961 (metacat): use icons for all other list editing
ben leinfelder
04:30 PM Revision 7960 (metacat): use icons for all other list editing
ben leinfelder
04:23 PM Revision 7959 (metacat): use icons for associated party list editing
ben leinfelder
04:16 PM Revision 7958 (metacat): use icons for associated party list editing
ben leinfelder
04:09 PM Revision 7957 (metacat): clean up delete data page with new style. Not sure if this is even accessible in the UI, but worth having it match the look and feel just in case.
ben leinfelder
03:58 PM Task #6004: Figure out why there are only 422 documents indexed in mn-demo-4.test.dataone.org
So the number of the total documents which should be indexed is 340. I tested and got 337. And there is no error in ... Jing Tao
03:26 PM Revision 7956 (metacat): use correct input name for "origZIP"
ben leinfelder
03:21 PM Revision 7955 (metacat): no ALL CAPS for abstract
ben leinfelder
03:18 PM Revision 7954 (metacat): use <h4> and not ALL CAPS for section headers
ben leinfelder
03:12 PM Revision 7953 (metacat): correct the instructions on the confirmation page
ben leinfelder
03:08 PM Revision 7952 (metacat): remove cellpadding="9" from nested tables
ben leinfelder
03:05 PM Revision 7951 (metacat)
ben leinfelder
02:59 PM Revision 7950 (metacat): surround page contents in another row-fluid div
ben leinfelder
02:58 PM Revision 7949 (metacat): use text-info class instead of label for the confirmation page. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
02:49 PM Revision 7948 (metacat): use <em> instead of <u>
ben leinfelder
02:02 PM Revision 7947 (metacat): get rid of the ALL CAPS section headers.
ben leinfelder
01:57 PM Revision 7946 (metacat): finish guide restyle.
ben leinfelder
01:48 PM Revision 7945 (metacat): restyle to data contact section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
01:35 PM Revision 7944 (metacat): restyle geo coverage section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
01:30 PM Revision 7943 (metacat): restyle keywords section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
12:50 PM Revision 7942 (metacat): restyle owner info section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
12:43 PM Revision 7941 (metacat): restyle basic info section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
12:33 PM Revision 7940 (metacat)
ben leinfelder
12:33 PM Revision 7939 (metacat)
ben leinfelder
12:31 PM Revision 7938 (metacat): use smaller span
ben leinfelder
12:28 PM Revision 7937 (metacat): restyle basic info
ben leinfelder
12:26 PM Revision 7936 (metacat): restyle basic info
ben leinfelder
12:20 PM Revision 7935 (metacat): use a row for submitter section
ben leinfelder
12:19 PM Revision 7934 (metacat): try without tables for first guide entry
ben leinfelder
12:13 PM Revision 7933 (metacat): change class="label" to class="text-info"
ben leinfelder
09:06 AM Revision 7932 (metacat): apply matt's change to missing > in td element for geographic coverage.
ben leinfelder
09:06 AM Revision 7931 (metacat): Move a file to the temp dir.
Jing Tao
05:31 PM Revision 7930 (metacat): close temporalCollapse div
ben leinfelder
05:26 PM Revision 7929 (metacat): clean up form indenting. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
05:15 PM Revision 7928 (metacat): clean up data upload section
ben leinfelder
05:05 PM Revision 7927 (metacat): restyle data upload section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder

07/11/2013

04:59 PM Revision 7926 (metacat): restyle distribution section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
04:34 PM Revision 7925 (metacat): correct form input id
ben leinfelder
04:28 PM Revision 7924 (metacat): Add a method to write ids which will be indexed into a file.
Jing Tao
04:28 PM Revision 7923 (metacat): use inline checkbox rendering for copy contact info option. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
04:27 PM Revision 7922 (metacat): use inline checkbox rendering for copy contact info option. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
04:25 PM Revision 7921 (metacat): restyle contact section, first pass. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
03:59 PM Revision 7920 (metacat): reformat methods paragraph textareas
ben leinfelder
03:57 PM Revision 7919 (metacat): reformat methods paragraph textareas
ben leinfelder
03:55 PM Revision 7918 (metacat): include study extent section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
03:51 PM Revision 7917 (metacat): restyle methods section, first pass. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
03:37 PM Revision 7916 (metacat): remove "More?" label in sections where you can dynamically add items -- it is not needed. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
03:36 PM Revision 7915 (metacat): adjust taxonomic section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
03:34 PM Revision 7914 (metacat): restyle taxonomic section, first pass. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
03:22 PM Revision 7913 (metacat): use radio labels in spatial section - table. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
03:10 PM Revision 7912 (metacat): adjust spatial section - table. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
03:03 PM Revision 7911 (metacat): remove extra END
ben leinfelder
03:02 PM Revision 7910 (metacat): restyle spatial section, first pass. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
02:48 PM Revision 7909 (metacat): adjust temporal section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
02:46 PM Revision 7908 (metacat): adjust temporal section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
02:43 PM Revision 7907 (metacat): restyle temporal section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
02:32 PM Revision 7906 (metacat)
ben leinfelder
02:31 PM Revision 7905 (metacat): put keywords list inside form control div. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
02:28 PM Revision 7904 (metacat): use option list for keyword thesaurus (oops). https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
02:24 PM Revision 7903 (metacat): restyle keywords section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
02:13 PM Revision 7902 (metacat): restyle abstract section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
02:05 PM Revision 7901 (metacat): restyle parties section - additional entries section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
02:03 PM Revision 7900 (metacat): restyle parties section - entry boxes. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
01:54 PM Revision 7899 (metacat): accordian-ize associated parties section, first pass (still using table). https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
01:46 PM Revision 7898 (metacat): accordian-ize owner section. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
01:35 PM Revision 7897 (metacat): show organization list in the registry
ben leinfelder
01:32 PM Revision 7896 (metacat): accordian-ize the first two entry sections. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
12:59 PM Revision 7895 (metacat): use login section from login page on the data confirmation stage (even though I don't believe we allow you to enter metadata before logging in any more) . https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
12:47 PM Revision 7894 (metacat): Use help-block on the response page form. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
12:28 PM Revision 7893 (metacat): Restyle the intro to the guide page. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
12:21 PM Revision 7892 (metacat): Restyle the response page. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
12:05 PM Revision 7891 (metacat): Restyle instruction section of delete page. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
12:01 PM Revision 7890 (metacat): Restyle instruction section of entry review page. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
11:54 AM Revision 7889 (metacat): Restyle instruction section of entry form. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
11:43 AM Revision 7888 (metacat): Fixed a bug that the missed id is not writtent to the file.
Jing Tao
11:36 AM Revision 7887 (metacat): redirect to the registry immediately on successful login. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
11:33 AM Revision 7886 (metacat): redirect to the registry immediately on successful login. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
11:24 AM Revision 7885 (metacat): redirect successful login to the registry page.
ben leinfelder
11:24 AM Revision 7884 (metacat)
ben leinfelder
11:20 AM Revision 7883 (metacat): Add a class to compare ids in the solr and metacat.
Jing Tao
11:13 AM Revision 7882 (metacat): include the result-template stuff - - causing js errors in perl registry without it.
ben leinfelder
10:54 AM Revision 7881 (metacat): use correct path to the header template. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
10:14 AM Revision 7880 (metacat): include metacatui "skin" for use in Perl registry rendering and eventually EML/metadata rendering. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
10:10 AM Revision 7879 (metacat): use new metacatUI footer. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
10:06 AM Revision 7878 (metacat): use new metacatUI header. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder

07/10/2013

04:32 PM Revision 7877 (metacat): Besides the getArchvied() method, the getObsoletedBy method was added to determine if the object is archvied or not.
Jing Tao
04:14 PM Revision 7876 (metacat): Add code to handle deleted ids.
Jing Tao
03:47 PM Revision 7875 (metacat): use fluid layout from metacatui/bootstrap css. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
01:12 PM Bug #6035: The system metadata table in a Metacat was messed up with the value of archived
The archive flag need not be set to true when there is an obsoletedBy value present. Either the obsoletedBy OR the ar... ben leinfelder
11:19 AM Bug #6035 (Rejected): The system metadata table in a Metacat was messed up with the value of archived
In the mn-demo-4.test.dataone.org, I queried the systemmetadata table and got:
metacat=> select count(*) from syst...
Jing Tao
01:09 PM Task #6004: Figure out why there are only 422 documents indexed in mn-demo-4.test.dataone.org
I did couple queries and found the archived value in the systemmetadata was messed up. Please see the bug:
https://p...
Jing Tao
11:29 AM Revision 7874 (metacat): remove custom classes from login form, simplify template, move js functions to separate file. prep for UI-refresh. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder

07/09/2013

04:46 PM Revision 7873 (metacat): Stubs for 'metacatui' rendering. Initial target is to support Perl registry styling, but also general structured html views on metadata. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
04:46 PM Revision 7872 (metacat): Stubs for 'metacatui' rendering. Initial target is to support Perl registry styling, but also general structured html views on metadata. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
04:46 PM Revision 7871 (metacat): Stubs for 'metacatui' rendering. Initial target is to support Perl registry styling, but also general structured html views on metadata. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
04:46 PM Revision 7870 (metacat): Stubs for 'metacatui' rendering. Initial target is to support Perl registry styling, but also general structured html views on metadata. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
04:45 PM Revision 7869 (metacat): Stubs for 'metacatui' rendering. Initial target is to support Perl registry styling, but also general structured html views on metadata. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
04:12 PM Revision 7868 (metacat): Include the 'metacatui' portion of the path to .js file. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
04:10 PM Revision 7867 (metacat): Initial copy of original Perl templates - before making any changes. https://projects.ecoinformatics.org/ecoinfo/issues/5951
ben leinfelder
03:41 PM Task #6004: Figure out why there are only 422 documents indexed in mn-demo-4.test.dataone.org
After we modified the SystemMetadataEventListener class to listen to a dedicated map for indexing, I indexed the meta... Jing Tao
02:55 PM Task #5921 (Closed): Design and implement Metacat-Index module
Jing Tao
02:54 PM Task #5921: Design and implement Metacat-Index module
All sub-tasks were done. Close the feature. Jing Tao
02:52 PM Task #5923 (Closed): Discover missed documents and queue them for indexing
We create a HazelcastEventLog class.
When a timed indexing finishes, it will set a property in a file. The file co...
Jing Tao
12:41 PM Task #5923 (In Progress): Discover missed documents and queue them for indexing
This is well-underway, mostly just testing (I believe). ben leinfelder
02:50 PM Bug #5812: Rework default skin[s] to use SOLR query
TBD: actually do the same thing we did for the NCEAS skin (qformat=nceas) for the standard Metacat default skin (qfor... ben leinfelder
02:48 PM Story #5811 (Closed): Redesign KNB look and feel
See the entire MetacatUI project for details. https://projects.ecoinformatics.org/ecoinfo/projects/metacatui ben leinfelder
02:46 PM Task #6005 (Closed): Incomplete solr index for the data objects if the resourcemap was indexed first
When Metacat-index indexes a resource map document, it will check if all data objects of the resource map have been i... Jing Tao
02:45 PM Story #5940 (Closed): Support session-based Metacat authentication (for D1 services)
ben leinfelder
01:43 PM Story #5940 (In Progress): Support session-based Metacat authentication (for D1 services)
ben leinfelder
02:38 PM Task #5941 (Rejected): Add login/logout methods to DataONE MN service
These methods don't really fit with our current model. I think it's fine to allow the "back door" (i.e., Metacat serv... ben leinfelder
02:37 PM Revision 7866 (metacat): Use schedule method to start the index.
Jing Tao
02:32 PM Feature #6034 (New): Simplify configuration for certificate delegation
So we don't loose this in the shuffle - we could probably fill out some of the MyProxy configuration values based on ... ben leinfelder
02:28 PM Feature #5936 (Closed): Include certificate delegation inside Metacat
ben leinfelder
01:41 PM Feature #5936 (In Progress): Include certificate delegation inside Metacat
Aside from making the myProxy configuration easier, this is done. It does require a bit of administration from regist... ben leinfelder
02:25 PM Bug #5395: Get unexpected result if a search was done before metacat finishes its indexing during the inserting process.
Deferring - though we don't really have a solution for this. Only affects a deprecated mechanism (pathquery), however. ben leinfelder
02:17 PM Feature #5910 (In Progress): Build index from scratch
ben leinfelder
02:16 PM Bug #2792 (Rejected): KNB home link needed on the Map Page
The entire KNB site is being redone, I don't even know if we will have a full map page! ben leinfelder
01:59 PM Task #5930 (Closed): Add a configuration property to turn on/off the indexing processes (SOLR indexing)
ben leinfelder
01:58 PM Feature #6033 (Closed): Add configuration to disable 'pathquery'
As we move toward SOLR-based query support, pathquery will play less of a role in Metacat. We should be able to disab... ben leinfelder
01:56 PM Feature #5913 (In Progress): Handle indexing errors
Remains to be seen how quickly this queue gets populated. We dont currently have any qualifiers on the kind of error ... ben leinfelder
01:53 PM Feature #5914 (Closed): Reconcile SOLR server/client versions
Both client and server are using v3.x now. Eventually DataONE plans to update the SOLR version, so we can consider t... ben leinfelder
01:46 PM Feature #5911 (In Progress): Repair index after outage
This may even be a duplicate of related task #5923 ben leinfelder
01:44 PM Feature #5912 (Closed): Force indexing on individual object[s]
There is now a Metacat servlet API action for this:... ben leinfelder
12:43 PM Revision 7865 (metacat): use tagged/released version of d1-portal project. https://projects.ecoinformatics.org/ecoinfo/issues/5936
ben leinfelder
12:38 PM Task #5945 (Closed): Implement reindex action for individual PID
ben leinfelder
12:38 PM Task #5944 (Closed): Metacat-index need an IndexEvent and IndexEventLog mechanism
Main development on this is complete - enhancements to this can be added in other tasks. ben leinfelder
10:40 AM Revision 7864 (metacat): include mn.publish() REST endpoint handling. https://projects.ecoinformatics.org/ecoinfo/issues/6024
ben leinfelder
10:16 AM Revision 7863 (metacat): Add the code to write the error message to the log in the itemRemvoed method.
Jing Tao
09:55 AM Bug #6030 (Closed): Deleting a document causes the method itemAdded(ItemEvent<SystemMetadata> entryEvent) in the SysteMetadataEventListener class being called twice
I used the morpho to test it and it seems that the issue was fixed. Jing Tao
06:20 PM Bug #6030 (In Progress): Deleting a document causes the method itemAdded(ItemEvent<SystemMetadata> entryEvent) in the SysteMetadataEventListener class being called twice
There were two calls to this - one in the D1 service implementation and another in the Metacat implementation that th... ben leinfelder
05:23 PM Bug #6030 (Closed): Deleting a document causes the method itemAdded(ItemEvent<SystemMetadata> entryEvent) in the SysteMetadataEventListener class being called twice
When we delete a document from the Metacat, the method itemAdded in the in the SysteMetadataEventListener class (Meta... Jing Tao
09:45 PM Feature #6031 (Rejected): Add rendered metadata to Bagit package contents
ben leinfelder
06:19 PM Revision 7862 (metacat): comment out the index queue call when archive() is called - I think it is causing the duplicate events for the listener. https://projects.ecoinformatics.org/ecoinfo/issues/6030
ben leinfelder
06:10 PM Revision 7861 (metacat): implement the view service (uses existing skin-based dbtransform) - and include the REST endpoint. https://projects.ecoinformatics.org/ecoinfo/issues/6028
ben leinfelder
05:51 PM Revision 7860 (metacat): use StreamSource instead of StringReader for method signature -- can be used with different sources this way. https://projects.ecoinformatics.org/ecoinfo/issues/6019
ben leinfelder
05:10 PM Revision 7859 (metacat): clean up DBTransform in preparation for "view" service. https://projects.ecoinformatics.org/ecoinfo/issues/6019
ben leinfelder

07/08/2013

03:09 PM Revision 7858 (metacat): In determining the time arrange, the equality was removed.
Jing Tao
03:05 PM Revision 7857 (metacat): Add code to handle failed ids.
Jing Tao
02:00 PM Revision 7856 (metacat): Remove the EventLog write.
Jing Tao
12:14 PM Revision 7855 (metacat): include GET /package/{pid} endpoint in MN service. https://projects.ecoinformatics.org/ecoinfo/issues/6027
ben leinfelder
12:09 PM Revision 7854 (metacat): Add the EventLog code.
Jing Tao

07/06/2013

06:33 PM Revision 7853 (metacat): MN.getPackage() - test with ORE that includes 2 data files and a "metadata" file (still should be using EML for that test). https://projects.ecoinformatics.org/ecoinfo/issues/6026
ben leinfelder
05:14 PM Revision 7852 (metacat): It will throw an exception if the subprocessor can't handle the document.
Jing Tao

07/05/2013

04:59 PM Revision 7851 (metacat): Check if the all components of a resource map have been processed before processing the resource map.
Jing Tao

07/04/2013

12:33 PM Revision 7850 (metacat): First pass at MN.getPackage() implementation using Bagit library from LOC. https://projects.ecoinformatics.org/ecoinfo/issues/6026
ben leinfelder
09:58 PM Revision 7849 (metacat): add method for publishing existing object (usually assumed to be scimeta) with a DOI. https://projects.ecoinformatics.org/ecoinfo/issues/6014
ben leinfelder

07/03/2013

04:34 PM Revision 7848 (metacat): Fixed a bug that the event log can't save the real lastest process date.
Jing Tao
03:56 PM Revision 7847 (metacat): Change the date format.
Remove the replication part of log4j. Jing Tao
10:28 AM Revision 7846 (metacat): Use a new date format.
Jing Tao
10:25 AM Revision 7845 (metacat): Add a log4j properties file.
Jing Tao
10:24 AM Revision 7844 (metacat): Add a file to specify the log4j as the logger.
Jing Tao
10:15 AM Task #5945 (In Progress): Implement reindex action for individual PID
This is in trunk now. You must be logged in as admin of Metacat in order to invoke it which makes a JUnit test diffic... ben leinfelder
10:13 AM Revision 7843 (metacat): add Metacat servlet action to force the reindexing of one or more or all pids in the system. https://projects.ecoinformatics.org/ecoinfo/issues/5945
ben leinfelder
09:02 AM Task #5944 (In Progress): Metacat-index need an IndexEvent and IndexEventLog mechanism
I have the hzIndexEventMap set up and persisting IndexEvent objects to postgres db now (using Metacat's connection). ... ben leinfelder
12:28 AM Revision 7842 (metacat): only use MapStore/MapLoader for saving/loading IndexEvent objects. No need to use a listener since there is only the single node -- all entries are persisted to DB using the hazelcast.xml config we have for the map. https://projects.ecoinformatics.org/ecoinfo/issues/5944
ben leinfelder
12:03 AM Revision 7841 (metacat): add MapStore/Loader test for the IndexEvents -- adding and removing events in the DB table through hazelcast. https://projects.ecoinformatics.org/ecoinfo/issues/5944
ben leinfelder

07/02/2013

04:47 PM Revision 7840 (metacat): support a "force replication delete all action" during replication. This is used when we want Metacat to remove the content from the other target replicas because the DataONE delete() action was called (more powerful than just "archive").
ben leinfelder
04:41 PM Revision 7839 (metacat): add simple test for the IndexEventDAO class -- adding, removing, listing events in the DB table. https://projects.ecoinformatics.org/ecoinfo/issues/5944
ben leinfelder
03:21 PM Revision 7838 (metacat): Add the code that only the ids with the correct system metadata modification time will be added to the index queue.
Jing Tao
12:38 PM Task #6004: Figure out why there are only 422 documents indexed in mn-demo-4.test.dataone.org
I queried the database and got the following result. There are 4998 in the xml_documents and 0 in the xml_revisions.
...
Jing Tao
12:18 PM Task #5924 (Closed): Add the configuration page for the Solr server in the Metacat configuration utility
Matt Jones
12:18 PM Task #5924: Add the configuration page for the Solr server in the Metacat configuration utility
Done. Ben added to main property page. Matt Jones
11:25 AM Task #5945: Implement reindex action for individual PID
Proposal is:
-create Metacat action "reindex" that takes an identifier.
-Metacat places the SystemMetadata for that...
ben leinfelder

07/01/2013

03:09 PM Revision 7837 (metacat): Use the hazelcast event log.
Jing Tao
01:59 PM Revision 7836 (metacat): Add code to get and set the last process date.
Jing Tao
 

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