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From 08/20/2013 to 09/18/2013

09/18/2013

04:09 PM Revision 8243 (metacat): Adding a protocol to the <link href=""> for the external CSS
Lauren Walker
03:50 PM Task #6095 (Closed): Pull metacatui from specific tag
added to build, but still pointing to 'master' for the time being. ben leinfelder
03:17 PM Task #6095 (Closed): Pull metacatui from specific tag
Right now it is pulling the HEAD for the build. Should pull a specific tag. ben leinfelder
03:50 PM Revision 8242 (metacat): pull a specific tag/branch form git when needed for metacatui.war
https://projects.ecoinformatics.org/ecoinfo/issues/6095 ben leinfelder
03:48 PM Revision 8241 (metacat): add anchor for plugin handlers property
ben leinfelder
03:37 PM Revision 8240 (metacat): Pull the external stylesheets in by <link> rather than @import for faster page load
Lauren Walker
03:15 PM Revision 8239 (metacat): Edit some of the instructions for activating an account. https://projects.ecoinformatics.org/ecoinfo/issues/6063
ben leinfelder
03:08 PM Revision 8238 (metacat): Edit some of the instructions for registering an account. https://projects.ecoinformatics.org/ecoinfo/issues/6063
ben leinfelder
03:07 PM Revision 8237 (metacat): add lookupname link to the login form. https://projects.ecoinformatics.org/ecoinfo/issues/2635
ben leinfelder
02:56 PM Revision 8236 (metacat): clone metacatui into a non-build directory so that it doesn't have to be recloned for every build.
ben leinfelder
02:01 PM Revision 8235 (metacat): Remove the words relative to knb.
Jing Tao
01:23 PM Revision 8234 (metacat): Remove the knb information in the emails.
Jing Tao
01:21 PM Revision 8233 (metacat): Add a link for forgot password in the loginForm.
Remove the words with specific knb. Jing Tao
11:22 AM Revision 8232 (metacat): Simplified the importing of images and stylesheets so that both /admin and /docs pull from /docs
Lauren Walker
10:28 AM Revision 8231 (metacat): Made some CSS changes to the "Go" button in the docs because it was off by a few pixels in three different browsers. Also changed the admin config landing page links to look like buttons
Lauren Walker
09:58 AM Revision 8230 (metacat): add documentation entries for fields that appear on the main metacat admin page.
ben leinfelder
09:04 AM Bug #6094 (Closed): Replace all screenshot images in the documentation with screenshots of the new documentation style
Lauren Walker

09/17/2013

05:02 PM Revision 8229 (metacat): Add code to handle the looking up names.
Jing Tao
04:53 PM Revision 8228 (metacat): Add two peroperties for the templates of looking up user name.
Jing Tao
04:50 PM Revision 8227 (metacat): Add a template to handle the success of looking up the username.
Jing Tao
04:49 PM Revision 8226 (metacat): Add a tempalte for users to look up the forgotten username.
Jing Tao
04:33 PM Revision 8225 (metacat): Imported FontAwesome after Bootstrap for the FontAwesome icons. Also added a white version of the metacat logo.
Lauren Walker
04:33 PM Revision 8224 (metacat): redirect to the configured metacatui context (ui.context in metacat.properties file). this in conjunction with choosing "metacatui" as the default skin in the metacat admin interface will redirect requests to the metacat context (e.g., /knb) to the ui context (e.g., /metacatui). https://projects.ecoinformatics.org/ecoinfo/issues/6062
ben leinfelder
04:32 PM Revision 8223 (metacat): prep for 2.2.0 release. include configuration value for metacatui deployment context.
ben leinfelder
04:19 PM Feature #6080 (Feedback): Update Metacat admin screen using cues from the new default look and feel
"wow" factor has been upped. :)
Pulled in more styling from the metacatUI default theme so the config pages have a...
Lauren Walker
10:40 AM Feature #6080 (In Progress): Update Metacat admin screen using cues from the new default look and feel
Via Ben, I'm upping the 'wow' factor Lauren Walker
04:17 PM Revision 8222 (metacat): Matched the admin config pages to the default metacatUI theme. Changed the background image of the docs and config pages to a big cat for some metacat branding.
Lauren Walker
03:22 PM Revision 8221 (metacat): Add a method to lookup users'account for the people who forgot their user name.
Jing Tao
10:36 AM Revision 8220 (metacat): Add code to generate dc=tmp. Clean up some code.
Jing Tao
10:20 AM Revision 8219 (metacat): bring the "Go" button down one more pixel to align with the search field.
ben leinfelder
09:58 AM Revision 8218 (metacat): Added a dark gray version of the metacat logo for the new configuration page styles
Lauren Walker
09:35 AM Feature #6092 (Closed): Science Metadata DOIs should point to "view" landing page
Added two optional entries in metacat.properties for including a template for the view landing page:... ben leinfelder

09/16/2013

09:58 PM Revision 8217 (metacat): Remove a reistriction that it didn't show the similar accounts of "ou=Account" in the user registration.
Jing Tao
09:45 PM Revision 8216 (metacat): Use the specific template for the verification.
Jing Tao
09:44 PM Revision 8215 (metacat): Add information about the activation email.
Jing Tao
05:43 PM Revision 8214 (metacat): Add the new properties to access the verification templates.
Jing Tao
05:41 PM Revision 8213 (metacat): Add a new template to handle the success of the email verification.
Jing Tao
05:40 PM Revision 8212 (metacat): Add a new template to handle the failure during the email verification.
Jing Tao
05:00 PM Revision 8211 (metacat): Fixed a bug that email verificaton doesn't work well on "ou=Account".
Jing Tao
04:34 PM Bug #6086 (Feedback): publish service call fails to authenticate properly
Now requiring authentication (session) to generate an identifier. Not reserving it with the CN at this point. ben leinfelder
03:49 PM Bug #6086: publish service call fails to authenticate properly
Added the dataone.subject to the list of metacat admins. This identity will enjoy the perks of being an admin when ac... ben leinfelder
02:34 PM Bug #6086: publish service call fails to authenticate properly
Part of the issue was not running under SSL. Fixing that, the correct update() command would be:... Matt Jones
04:33 PM Revision 8210 (metacat): require authenticated session when minting a DOI/other identifier. https://projects.ecoinformatics.org/ecoinfo/issues/6086
ben leinfelder
04:19 PM Revision 8209 (metacat): test that d1 node admin is allowed all permissions. https://projects.ecoinformatics.org/ecoinfo/issues/6086
ben leinfelder
03:47 PM Revision 8208 (metacat): include the dataone.subject (node admin) in the list of administrators. This allows full administrative access to objects when using certificates+d1 api. https://projects.ecoinformatics.org/ecoinfo/issues/6086
ben leinfelder
03:16 PM Revision 8207 (metacat): Fixed a bug to split the organization list from a property file.
Fixed a bug to use a wrong object class for the ou. Jing Tao
02:31 PM Revision 8206 (metacat): Pass a organization list to the template.
Jing Tao
02:29 PM Revision 8205 (metacat): replace the hard-coded organization list.
Jing Tao
02:22 PM Revision 8204 (metacat): test for configured target url template on metadata using the default #view url. https://projects.ecoinformatics.org/ecoinfo/issues/6092
ben leinfelder
01:42 PM Feature #6080 (Closed): Update Metacat admin screen using cues from the new default look and feel
Configuration pages have new CSS and the HTML was updated a bit so it now fits in with the default metacatUI theme. Lauren Walker
01:41 PM Revision 8203 (metacat): Redesigned the /admin configuration pages to better match our new MetacatUI design. Looks good in both /context/admin view and the #external view using metacatUI
Lauren Walker
12:00 PM Revision 8202 (metacat): use optional template for registering DOIs at a given target. https://projects.ecoinformatics.org/ecoinfo/issues/6092
ben leinfelder
11:14 AM Feature #6092 (Closed): Science Metadata DOIs should point to "view" landing page
We'll use a configurable template for the URI in metacat.properties that will allow us flexibility in determining wha... ben leinfelder
10:32 AM Revision 8201 (metacat): Add code to get organization information from the ldapconfig.
Jing Tao

09/13/2013

03:58 PM Bug #6061 (Closed): Ensure that all packages from metacat API have resource map
Now generating OREs when Metacat API is used to insert science metadata.
Also added a better check for existing OR...
ben leinfelder
03:53 PM Revision 8200 (metacat): only attempt to generate OREs for objects that we know not to have them already. https://projects.ecoinformatics.org/ecoinfo/issues/6061
ben leinfelder
03:46 PM Revision 8199 (metacat): Add a new property to control showing the organization list.
Jing Tao
03:45 PM Revision 8198 (metacat): Add a new property ldap.template.organizationList to control the list of the organization in the ldap templates.
It can be overwitten by the skin property with the same name.
Also add the Account organization.
Jing Tao
03:01 PM Revision 8197 (metacat): First get the email sender from the skin properties. If it is null, get it from the metacat.properties file.
Jing Tao
02:11 PM Revision 8196 (metacat): A few style changes to the docs
Lauren Walker
01:30 PM Revision 8195 (metacat): Remove the sentence which saied the failure reason is the uid has been used.
Jing Tao
01:25 PM Revision 8194 (metacat): Reword a message for the failed verification.
Jing Tao
11:12 AM Revision 8193 (metacat): Generate an ORE when sci metadata is added via the Metacat API.
https://projects.ecoinformatics.org/ecoinfo/issues/6061 ben leinfelder
10:02 AM Revision 8192 (metacat): Added an ID and div wrapper to the docs html for more precise CSS selectors in the metacatui ExternalView.
Lauren Walker

09/12/2013

05:12 PM Revision 8191 (metacat): Add code to handle the failure of the email server.
Jing Tao
04:50 PM Revision 8190 (metacat): better checking for ORE maps when publishing DOIs (need to update the packages that contain sci meta). https://projects.ecoinformatics.org/ecoinfo/issues/6061
ben leinfelder
01:45 PM Revision 8189 (metacat): implement ORE check method to actually query the MN for OREs that reference the given pid.
https://projects.ecoinformatics.org/ecoinfo/issues/6061 ben leinfelder
11:25 AM Feature #6075 (Closed): Modify Metacat admin documentation so that it uses the chosen theme in the browser
It won't be possible to view the docs in a theme before configuration, so I created a new Sphinx theme to mirror the ... Lauren Walker
11:19 AM Revision 8188 (metacat): Added a Sphinx theme for the documentation that mirrors the new default theme for MetacatUI.
https://projects.ecoinformatics.org/ecoinfo/issues/6075 Lauren Walker
10:48 AM Feature #6089 (Closed): Remove index_event record when reindex is successful
Now calling the event log remove() method for all successful reindex attempts. ben leinfelder
10:43 AM Feature #6089 (In Progress): Remove index_event record when reindex is successful
I think this will be useful, especially for cases like what Mike Frenock is experiencing - manually reindexing items ... ben leinfelder
10:45 AM Revision 8187 (metacat): remove any index event errors if the pid has successfully been reindexed. https://projects.ecoinformatics.org/ecoinfo/issues/6089
ben leinfelder

09/11/2013

09:57 PM Revision 8186 (metacat): Add code to check if password match in the registeration.
Jing Tao
09:36 PM Revision 8185 (metacat): Add the new feature for the email verification.
Jing Tao
10:59 AM Revision 8184 (metacat): change hazelcast group name to match the current context. https://projects.ecoinformatics.org/ecoinfo/issues/5624
ben leinfelder
10:49 AM Revision 8183 (metacat): try to cut down on the number of metacat-ui build calls - the SEEK build ends up calling war target more oftenthan not!
ben leinfelder
10:13 AM Feature #6089 (Closed): Remove index_event record when reindex is successful
If manually reindexing a pid that had an error, we should remove the record (if it exists) from the index_event table... ben leinfelder
09:28 AM Revision 8182 (metacat): Fixed a bug that the url link was not correct in the email.
Jing Tao

09/10/2013

11:03 PM Revision 8181 (metacat): Send the verification email.
Jing Tao
05:58 PM Revision 8180 (metacat): Add code to add a user to the tmp subtree.
Jing Tao
04:19 PM Bug #2646 (Closed): allow eml to specify any valid user as access constraint
This is supported in DataONE using the access rule conventions specified there, notably, "authenticatedUser"
http:...
ben leinfelder
04:16 PM Bug #129 (Closed): Metacat Performance: paged Query Returns
Now using SOLR as the search mechanism which absolutely supports paged results. ben leinfelder
03:49 PM Task #2635: Look up for forgotten KNB account names
Might consider this feature to be added to the ldapweb.cgi while it is being extended. ben leinfelder
03:46 PM Bug #1311 (Closed): Registry: Links should open in a new window and windows should move to front
This is no longer and issue with the guide because we are using it inside the metacatui pulled into a modal "help" ov... ben leinfelder
03:43 PM Bug #5243: ldapweb.cgi crashes with invalid password characters
Jing - would be great if we can check for some special characters and fail gracefully if their password uses ones tha... ben leinfelder
03:40 PM Bug #3761 (Closed): Add ability for admin user to log out
added action=logout link to header and footer ben leinfelder
03:40 PM Revision 8179 (metacat): add logout links to header and footer. https://projects.ecoinformatics.org/ecoinfo/issues/3761
ben leinfelder
03:34 PM Task #3306: NCEAS skin account creation needs more thought
When working on the LDAP web interface, we should keep this in mind -- the templates should be as generic as possible... ben leinfelder
03:31 PM Bug #3395 (Closed): allow private access via indexed "shortcut" url
This is essentially supported by the D1 REST service now - both using client certs or JSESSIONID cookies. ben leinfelder
03:29 PM Bug #4085 (Rejected): The session couldn't be kept after login through devtools.html
now using JSESSIONID cookies when you leave the sessionid off the query string ben leinfelder
03:25 PM Bug #3021 (Rejected): ldapweb.cgi needs some usability improvements
Actually, login is handled by the registry, not ldapweb.cgi. Redirects would be nice, but it is possible to "trick" i... ben leinfelder
03:20 PM Bug #5647 (Closed): Lack of access rights for "previous" datafile prevent saving
Now checking the current and the previous revisions - if either allows updates, then the action proceeds successfully... ben leinfelder
03:17 PM Revision 8178 (metacat): check both previous and current data revisions when updating packages. https://projects.ecoinformatics.org/ecoinfo/issues/5647
ben leinfelder
12:18 PM Revision 8177 (metacat): Fixed a bug in creating a subtree.
Jing Tao
07:52 AM Revision 8176 (metacat): Add code to generate temporary subtree if it didn't exist.
Jing Tao

09/09/2013

05:55 PM Revision 8175 (metacat): add a new subroutine to create a temporary account.
Jing Tao
03:34 PM Bug #5647: Lack of access rights for "previous" datafile prevent saving
Sarah Clark has also seen this behavior, but in a slightly different scenario. Instead of an any EML parsing error, t... ben leinfelder
03:30 PM Bug #6054 (Closed): dataPackage.xxxx.zip BagIt package is unzipped as "bag"
ben leinfelder
03:30 PM Story #6064 (Closed): Metacat bundle packaging
ben leinfelder
03:28 PM Task #6088 (Closed): Update documentation to use new context name
ben leinfelder
03:26 PM Task #6087 (Closed): Change all default configurations to use new context
ben leinfelder
03:11 PM Bug #6086: publish service call fails to authenticate properly
I should also mention that you should not call publish() on the KNB until Metacat 2.1.1 is installed since there is a... ben leinfelder
08:22 AM Bug #6086 (In Progress): publish service call fails to authenticate properly
Well, for the first issue, you cannot expect a client certificate to work if you aren't using https. If the URL in th... ben leinfelder
03:07 PM Task #6081 (Closed): Build metacatui.war in Metacat bundle
ben leinfelder
03:05 PM Task #6069 (Closed): Pull metacatui from public Git repo into Metacat
ben leinfelder
03:05 PM Revision 8174 (metacat): include metacatui.war in the Metacat distribution. https://projects.ecoinformatics.org/ecoinfo/issues/6064
ben leinfelder

09/06/2013

04:45 PM Bug #6086 (Closed): publish service call fails to authenticate properly
I was trying to issue a DOI for Sarah Olson's data set tonight via curl on the KNB using the KNB node certificate as ... Matt Jones
02:26 PM Bug #6085 (Closed): SQL error when inserting EML beta2 access document
ben leinfelder
02:23 PM Bug #6085 (Closed): SQL error when inserting EML beta2 access document
I was showing Lauren how to use the perl lib to transfer test content from one Metacat to her localhost and we got th... ben leinfelder
02:22 PM Revision 8173 (metacat): avoid SQL errors when processing very old objects of type: "-//ecoinformatics.org//eml-access-2.0.0beta6//EN"
ben leinfelder
12:46 PM Bug #5812 (Closed): Rework default skin[s] to use SOLR query
This has been superseded by metacatUI work. ben leinfelder
12:45 PM Feature #6075: Modify Metacat admin documentation so that it uses the chosen theme in the browser
This strongly overlaps with the task in metacatUI. Both projects may need to be modified to fully support this. ben leinfelder
10:07 AM Feature #6075 (Closed): Modify Metacat admin documentation so that it uses the chosen theme in the browser
Lauren Walker
12:41 PM Story #6082 (Closed): Rename knb.war to ???.war
Possible names (please add more suggestions):
-metacat.war (would make <hostname>/metacat/metacat for the Metacat se...
ben leinfelder
12:38 PM Story #6064: Metacat bundle packaging
Tracking for potential modifications to the binary distribution of Metacat to include:
server (knb.war)
indexing (...
ben leinfelder
12:36 PM Task #6081 (Closed): Build metacatui.war in Metacat bundle
ben leinfelder
12:35 PM Task #6068 (Closed): Update Metacat skin admin screen
Added note to the skin configuration screen and made the screen configured by default for an initial deployment of kn... ben leinfelder
12:34 PM Revision 8172 (metacat): mark skin configuration as being complete by default so as to encourage use of metacatUI. https://projects.ecoinformatics.org/ecoinfo/issues/6068
ben leinfelder
12:15 PM Revision 8171 (metacat): add note about new metacatUI themes to the skin config page. https://projects.ecoinformatics.org/ecoinfo/issues/6068
ben leinfelder
12:01 PM Revision 8170 (metacat): Display the recaptcha on the register stage.
Jing Tao
11:59 AM Feature #6080: Update Metacat admin screen using cues from the new default look and feel
Talked this over with Lauren and we think it will be relatively quick to apply the new default look and feel to the a... ben leinfelder
11:57 AM Feature #6080 (Closed): Update Metacat admin screen using cues from the new default look and feel
The header and footer sections will not have the same exact links as the default theme because this is targeting admi... ben leinfelder
10:21 AM Feature #6077 (Rejected): Include new instructions for modifying themes in the Metacat admin documentation
Lauren Walker
10:08 AM Feature #6077 (Rejected): Include new instructions for modifying themes in the Metacat admin documentation
Lauren Walker
07:53 AM Revision 8169 (metacat): Read the recaptcha key from the metacat.properties.
Jing Tao
07:36 AM Revision 8168 (metacat): Add two new properties to store the recaptcha public key and private key.
Jing Tao

09/05/2013

05:11 PM Task #6069 (Closed): Pull metacatui from public Git repo into Metacat
Since the original nceas staff repo for datadepot is protected (even for reading) we need to push the release tags to... ben leinfelder
05:00 PM Task #6068 (Closed): Update Metacat skin admin screen
It should have a note about the new metacatUI method and should be marked as already configured (default) so that no ... ben leinfelder
04:59 PM Revision 8167 (metacat): Add the recaptcha protection.
Jing Tao
04:58 PM Revision 8166 (metacat): Add the recaptcha protection.
Jing Tao
04:45 PM Task #6067 (Closed): Update documentation to reflect the new metacatui theme mechanism
ben leinfelder
04:43 PM Task #6066 (Closed): Add email verification for new accounts
We should send a temporary link to activate an account using on a randomly-generated key for their provisional accoun... ben leinfelder
04:38 PM Task #6065 (Closed): Add reCaptcha widget to initial registration page
ben leinfelder
04:34 PM Story #6064 (Closed): Metacat bundle packaging
ben leinfelder
04:33 PM Story #6063 (Closed): ldapweb.cgi enhancements
ben leinfelder
04:32 PM Story #6062 (Closed): Deprecate skin configuration
ben leinfelder

09/04/2013

11:54 AM Bug #6061 (In Progress): Ensure that all packages from metacat API have resource map
Yesterday I ran the "Generate ORE" action for KNB's holdings. After a while I got a nagios warning that the server wa... ben leinfelder

09/03/2013

09:26 AM Bug #6061: Ensure that all packages from metacat API have resource map
Originally, we decided that the old Metacat API would not generate ORE objects for new content coming into the system... ben leinfelder

09/02/2013

11:03 AM Bug #6061 (Closed): Ensure that all packages from metacat API have resource map

Data package downloads no longer have data files in them, even when the data are present in Metacat via an upload f...
Matt Jones

08/27/2013

02:39 PM Feature #6033 (Resolved): Add configuration to disable 'pathquery'
In the metacat.properties file, there is a property:
dbquery.enabledEngines=pathquery;solr
If the "pathquery" i...
Jing Tao
11:19 AM Revision 8165 (metacat): set the timed index interval to be 12 hours.
Jing Tao

08/26/2013

04:30 PM Revision 8164 (metacat): If the pathquery engine is disabled, the xml path index queue will be disabled as well.
Jing Tao
11:50 AM Revision 8163 (metacat): If the xpath query is disabled, the query, squery and spatial_query action will be disabled as well.
Jing Tao

08/23/2013

04:01 PM Revision 8162 (metacat): Add code to throw an exception if the pathquery is not enabled.
We also need to disable building index if the pathquery is disabled. Jing Tao
02:45 PM Bug #6057 (Closed): Publish DOI action does not update revision history correctly
Now fixed in the 2.1.1 release. ben leinfelder
02:44 PM Bug #6057 (Closed): Publish DOI action does not update revision history correctly
System metadata was not correctly duplicated for the new object (using the DOI) and the revision history suffered. ben leinfelder
11:39 AM Revision 8161 (metacat): Change the parameters order of the constructor. We maybe reuse some code from d1_cn_processor.
Jing Tao

08/22/2013

04:06 PM Bug #6054 (Feedback): dataPackage.xxxx.zip BagIt package is unzipped as "bag"
Now using file names like:... ben leinfelder
03:38 PM Bug #6054 (Closed): dataPackage.xxxx.zip BagIt package is unzipped as "bag"
It should be "dataPackage" or a mangled version of the PID ben leinfelder
04:04 PM Revision 8160 (metacat): use consistent file names and zip content names. Opted for "-" separator so that the zip writer does not remove the unique part of the filename. https://projects.ecoinformatics.org/ecoinfo/issues/6054
ben leinfelder
03:52 PM Revision 8159 (metacat): Change the solr-home directory location for the testing.
Jing Tao
03:51 PM Revision 8158 (metacat): Not include the solr-home in the jar file.
Jing Tao
12:21 PM Feature #6031: Add rendered metadata to Bagit package contents
I was just moving it out of the 1.0.0 MetacatUI version so it didn't get lost. Moving to metacat as Ben indicated. Matt Jones
12:11 PM Feature #6031: Add rendered metadata to Bagit package contents
This is a Metacat feature and would need to be coded in the MN.package() method. ben leinfelder
12:16 PM Bug #6053: Include rendered Metadata in Bagit content
TBD:
-What format should the Metadata be in: PDF or HTML?
-What L+F/branding would be included or not?
-Would eith...
ben leinfelder
12:12 PM Bug #6053 (Closed): Include rendered Metadata in Bagit content
ben leinfelder

08/21/2013

04:09 PM Revision 8154 (metacat): export a directory rather than a file in the scm plugin. This fixed an issue that the pom.xml didn't work with the svn with version 1.6.
Jing Tao
 

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