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From 09/30/2013 to 10/29/2013

10/29/2013

07:38 AM Feature #6109 (Rejected): Keep the SOLR index for obsoleted objects
I believe we decided to keep this as is: removing archived objects from the index, but keeping the entries that have ... ben leinfelder

10/28/2013

11:01 AM Feature #6109: Keep the SOLR index for obsoleted objects
Note: we only removed the solr index for the archived objects. Jing Tao
10:56 AM Feature #6109 (In Progress): Keep the SOLR index for obsoleted objects
Currently, the solr index will keep both obsoleted and archived objects. The cn only keeps obsoleted objects but remo... Jing Tao

10/18/2013

04:01 PM Bug #6161 (Closed): Add access_log indexes to support DataONE log retrieval
These are in the trunk now. For large repositories, it may be necessary to increase postgres configuration values so ... ben leinfelder
12:14 PM Bug #6161 (Closed): Add access_log indexes to support DataONE log retrieval
ben leinfelder

10/17/2013

04:04 PM Bug #6123: Rework on the IndexGenerator class in the metacat-index module
I am thinking of the issues about moving the class to Metacat:
This class is a backup plan. If we move it to Metac...
Jing Tao
01:43 PM Bug #6157 (Resolved): Couldn't control the log level in solr
It turned out that the solr-core.jar and other solr jar files are using the slf4j logging mechanism. It comes with tw... Jing Tao
01:36 PM Bug #6157 (Resolved): Couldn't control the log level in solr
Our current log control didn't work with the log from solr. It has the default value - INFO. The log message was very... Jing Tao
05:24 PM Bug #6154 (Resolved): The metacat configuration showed that it was done even though the dataONE configuration hadn't been touched
Add a new class DataONEConfigUtil. It has a method to determine if the configuration for DataONE is done or not.
Thi...
Jing Tao
05:23 PM Bug #6154 (Resolved): The metacat configuration showed that it was done even though the dataONE configuration hadn't been touched
It seems the configuration ignore the dataONE part. Jing Tao

10/15/2013

10:34 AM Bug #6141 (Closed): Permission denied to update/publish metadata for group member on Gulfwatch
ben leinfelder
10:31 AM Bug #6141 (In Progress): Permission denied to update/publish metadata for group member on Gulfwatch
In the branch - being included in 2.2.1 patch for MN and CNs ben leinfelder
08:36 AM Bug #6141: Permission denied to update/publish metadata for group member on Gulfwatch
Yes, she was logged in fully. I was tailing the logs and watched her log in, and could see the entry scroll by. Als... Matt Jones
06:47 AM Bug #6141: Permission denied to update/publish metadata for group member on Gulfwatch
My first guess is that there is something not quite right with the login/session since the error message only mention... ben leinfelder
10:34 AM Bug #6136 (Closed): files left open causes too many file descriptors on OS
ben leinfelder
10:33 AM Bug #6142: Metacat.property guid.ezid.unitemplate.metadata includes context
This is in the 2.2 branch. ben leinfelder
06:47 AM Bug #6142: Metacat.property guid.ezid.unitemplate.metadata includes context
This should be included in the upcoming patch release. ben leinfelder
10:31 AM Bug #6138 (Closed): Metacat-index assumes default "knb" context
ben leinfelder

10/12/2013

05:39 PM Bug #6142 (Resolved): Metacat.property guid.ezid.unitemplate.metadata includes context

This has been changed to just be the hostname only.
The metacat.properties file on the Gulfwatch server is also ...
Lauren Walker
05:36 PM Bug #6141 (Closed): Permission denied to update/publish metadata for group member on Gulfwatch
Sarah Clark was unable to publish metadata on Gulfwatch even though she is a member of the evos group which has permi... Lauren Walker

10/10/2013

12:43 PM Bug #6136: files left open causes too many file descriptors on OS
A brief overview of how I was inspecting memory, threads, file descriptors, etc. while stress testing Metacat. This ... Matt Jones
11:57 PM Bug #6136: files left open causes too many file descriptors on OS
Checked all instances of FileInputReader and ensured that close() was being called properly. See commit r8304.
Matt Jones
12:12 PM Bug #6138 (Closed): Metacat-index assumes default "knb" context
ben leinfelder
09:39 AM Task #6040: Metacat-index does not handle <references>
Even with a SAX parser, the implementation could keep track of all elements with "id" attributes and anytime a "refer... ben leinfelder
09:36 AM Task #6040: Metacat-index does not handle <references>
Skye said that the sax parser is used to parse those information. This change may require to use DOM parser. It is a... Jing Tao
09:37 AM Bug #6137 (Resolved): Add a new action reindexall to reindex all the solr index
Just leave as it is. Jing Tao
10:03 PM Bug #6137: Add a new action reindexall to reindex all the solr index
I read this message after i committed the change :)
I still think we should give an expensive process a dedicated ...
Jing Tao
09:33 AM Task #6110 (Resolved): Use a new schema of dataone solr index so that the author last name can be sortable
Skype released a "buildout" component DATAONE-CN-INDEX_v1.2.1. It only has the schema change. Now our schema is using... Jing Tao

10/09/2013

04:52 PM Bug #6137: Add a new action reindexall to reindex all the solr index
I think this would be redundant and it would be better to just leave it as is, and have administrators use care. The... Matt Jones
04:14 PM Bug #6137 (Resolved): Add a new action reindexall to reindex all the solr index
Currently we have an action named reindex. If the action has a parameter pid, it will reindex the solr index of the s... Jing Tao
04:02 PM Story #6114: Include updated D1 indexing library
After changing the version depency on the metacat-index pom.xml and some code change, the new version works.
Ther...
Jing Tao
03:27 PM Task #6110: Use a new schema of dataone solr index so that the author last name can be sortable
Won't this be included in the next (1.2.1) release of the library as well? Could just wait for that if it is coming u... ben leinfelder
03:23 PM Task #6110: Use a new schema of dataone solr index so that the author last name can be sortable
After adopting the d1_cn_index_processor 1.2.0, the authorSurNameSort field is sortable. But it doesn't work very wel... Jing Tao
03:20 PM Feature #6109 (Resolved): Keep the SOLR index for obsoleted objects
Removed the code which excluded the obsoleted objects from indexing. Next release, we need to notice the metacat owne... Jing Tao
03:17 PM Bug #6122 (Resolved): Metacat-index can't index taxon information
Adopted d1_cn_index_processor 1.2.0 into metacat. The new version processor can index taxon information. Jing Tao
03:05 PM Bug #6136: files left open causes too many file descriptors on OS
After looking into this, its not just file handles that are left open, but many InputStream and OutputStream instance... Matt Jones
01:53 PM Bug #6136: files left open causes too many file descriptors on OS
Switched to using IOUtils.closeQuietly() which handles nulls and already closed file handles in r8299. Matt Jones
01:28 PM Bug #6136: files left open causes too many file descriptors on OS
Also added a close() to the finally block in DocumentImpl.readFromFileSystem() in r8298. This is probably not causin... Matt Jones
01:05 PM Bug #6136: files left open causes too many file descriptors on OS
Closed file handles in DocumentImpl and ReplicationService in commit r8297. Matt Jones
01:03 PM Bug #6136 (Closed): files left open causes too many file descriptors on OS
Metacat writes temp files to disk, and in the process has been failing to close file handles. Over time, especially ... Matt Jones

10/07/2013

04:09 PM Story #6128 (Closed): Wait for MetacatUI 1.1.0 release
Using MetacatUI 1.1.0 tag.
https://github.com/NCEAS/metacatui/tree/METACATUI_1_1_0
ben leinfelder

10/05/2013

05:32 PM Story #6128 (Closed): Wait for MetacatUI 1.1.0 release
ben leinfelder

10/04/2013

11:39 AM Bug #6123 (Rejected): Rework on the IndexGenerator class in the metacat-index module
The IndexGenerator class has two purpose - first, to create the solr index for all data objects for a Metacat which i... Jing Tao
11:20 AM Bug #6122: Metacat-index can't index taxon information
This will be fixed by adopting d1_cn_index_processor 1.2 in the 2.2.1 release. Jing Tao
05:47 PM Bug #6122: Metacat-index can't index taxon information
I committed those files to the trunk and it works. I haven't committed to the 2.2.0 branch. Jing Tao
05:46 PM Bug #6122 (Resolved): Metacat-index can't index taxon information
With the help of Skye, we patched 5 files: application-context-eml-base.xml, application-context-eml201.xml, applicat... Jing Tao
09:54 PM Bug #6117 (Resolved): Reindexing (action=reindex) only works once
I installed a metacat from the 2.2.0 branch. It works very well for the reindex action.
I also deleted the solr in...
Jing Tao

10/03/2013

12:46 PM Bug #6117 (In Progress): Reindexing (action=reindex) only works once
Added code to remove from the queue when responding to the add event. Testing now. ben leinfelder
12:39 PM Bug #6117 (Resolved): Reindexing (action=reindex) only works once
ben leinfelder
12:17 PM Task #6040: Metacat-index does not handle <references>
Spaces aren't really sufficient as a solution, and there are a lot of references fields in EML. We probably need to ... Matt Jones
12:01 PM Task #6040: Metacat-index does not handle <references>
This is included in the 1.2.0 d1 index release. It will not include || but instead will use blanks. Not a very great ... ben leinfelder
11:07 AM Task #6040: Metacat-index does not handle <references>
Apparently this is fixed in cn-index-processor v1.2.0 -- so we will need to pull in this newer dependency in metacat-... ben leinfelder
11:59 AM Task #6110: Use a new schema of dataone solr index so that the author last name can be sortable
This is included in the v1.2.0 release of d1 indexing -- called "authorSurNameSort"
Schema:
https://repository.da...
ben leinfelder
11:47 AM Feature #6031 (Rejected): Add rendered metadata to Bagit package contents
Duplicate of 6053 ben leinfelder

10/02/2013

11:41 AM Story #6062 (Closed): Deprecate skin configuration
ben leinfelder
11:40 AM Task #6067 (Closed): Update documentation to reflect the new metacatui theme mechanism
ben leinfelder
11:36 AM Bug #5243: ldapweb.cgi crashes with invalid password characters
move it to 2.2.1 Jing Tao
10:58 AM Bug #5243: ldapweb.cgi crashes with invalid password characters
I agree to add guidelines for users. Jing Tao
10:55 AM Bug #5243: ldapweb.cgi crashes with invalid password characters
While we do allow someone to create an account with special characters as the password, I am unable to login using th... ben leinfelder
11:12 AM Story #6063 (Closed): ldapweb.cgi enhancements
ben leinfelder
10:50 AM Task #6113 (Resolved): Getting "Bad header" error when similar accounts are present
the new installation fixed the issue. Jing Tao
05:59 PM Task #6113: Getting "Bad header" error when similar accounts are present
i installed a new metacat with the trunk code. The ldap server points to ldap-dev. It works great with similar accou... Jing Tao
05:08 PM Task #6113 (Resolved): Getting "Bad header" error when similar accounts are present
WHen I try to register with an account that has similar info as an existing one (email, last name etc) on dev2.nceas.... ben leinfelder
10:24 AM Task #6115 (Resolved): ldapweb.cgi - default configuration should use o=unaffiliated
I change the configuration in the metacat.properties and nceas.properties. The default value now is unaffiliated. Jing Tao
09:48 AM Task #6115 (Resolved): ldapweb.cgi - default configuration should use o=unaffiliated
We are not yet ready to use ou=Account by default in our ldapweb skin configurations. ben leinfelder
09:46 AM Bug #6086 (Closed): publish service call fails to authenticate properly
ben leinfelder
09:23 AM Story #6114 (Closed): Include updated D1 indexing library
ben leinfelder

10/01/2013

04:59 PM Task #6096 (Closed): Add reCaptcha library instructions to admin docs
Added to the registry installation section. ben leinfelder
04:22 PM Task #6110 (Resolved): Use a new schema of dataone solr index so that the author last name can be sortable
Ben said skye developed a new schema of the dataone solr index so that the author last name can be sortable. We need ... Jing Tao
04:09 PM Feature #6109 (Closed): Keep the SOLR index for obsoleted objects
Currently, metacat only keeps the solr index for the current objects. The solr index for the obsoleted objects are re... Jing Tao
01:27 PM Feature #6107 (Rejected): Make publication year in search results less prominent
Should have put this in MetacatUI project Lauren Walker

09/30/2013

02:25 PM Feature #6107 (Rejected): Make publication year in search results less prominent
Move to the end of the citation line and preface with "Published:" Lauren Walker
 

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