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From 05/04/2017 to 06/02/2017

06/03/2017

05:35 PM Revision 10338 (metacat): Add the code to add the ldap group information for the given user.
Jing Tao
05:29 PM Revision 10336 (metacat): Add a new method to get all groups for a given user.
Jing Tao
05:26 PM Revision 10334 (metacat): Make a debug statement clearer.
Jing Tao

06/02/2017

02:03 PM Bug #7199 (New): Upgrade postgresql jdbc jar file on Metacat
Please see detail on this ticket:
https://redmine.dataone.org/issues/8104
Jing Tao
10:30 AM Feature #7198 (New): Format solr engine description output
The solr engine description information from DataONE has XSLT formatted output that includes a description of each fi... Peter Slaughter

05/31/2017

11:05 AM Feature #7197 (Resolved): Display the dc:source field from DCX metadata documents in the stylesheet
Lauren Walker
10:32 AM Revision 10331 (metacat): Display the dc:source field from dublin core metadata in the onedcx-common stylesheet
Lauren Walker

05/30/2017

01:32 PM Bug #7196 (Resolved): MN.Delete should continue even though it can't find the local file
The MN.delete method stops and throws an exception when it can't find the local file. Somehow this scenario, which is... Jing Tao
12:39 PM Bug #7187: Set file names correctly when reading objects from Metacat
It is in the 2.8.3 release. Jing Tao

05/26/2017

10:44 AM Bug #7195 (Resolved): LDAP-based group authorization is failing
In calls to @MNRead.getSystemMetadata()@ where the user logged in is a member of a group, and the group is listed in ... Chris Jones

05/25/2017

05:13 PM Revision 10329 (metacat): Modified the query to find the previous version of the ore document in the publish method.
Jing Tao

05/24/2017

04:59 PM Revision 10328 (metacat): Add a new bug was fixed in 2.8.3
Jing Tao
04:54 PM Bug #7194 (Resolved): MN.publish method can't generate a new ore document when the metadata is published
The query for choosing the old version of the ore document is wrong. After I rewrote the query, it works.
Jing Tao
04:53 PM Bug #7194 (Resolved): MN.publish method can't generate a new ore document when the metadata is published
After publish a metadata object created from the R client, the package information was missing. Jing Tao
04:51 PM Bug #7193 (Resolved): MN.publish fails because of the mismatched checksum
Added code to change the checksum. It works right now. Jing Tao

05/23/2017

03:56 PM Revision 10325 (metacat): Add the release node for 2.8.3
Jing Tao
03:37 PM Bug #7188 (Resolved): MNodeService.replicate() is failing
We use the DigestOutputStream to wrap the output stream which will write the bytes to disks. The checksum are compute... Jing Tao
03:34 PM Bug #7192 (Resolved): MN.update method doesn't check the checksum
Jing Tao
03:32 PM Bug #7187 (Resolved): Set file names correctly when reading objects from Metacat
Tested it and it worked.
Jing Tao

05/22/2017

01:56 PM Revision 10323 (metacat): Change the test metacat deployment directory.
Jing Tao
12:52 PM Revision 10321 (metacat): Fixed a bug that the eml object wasn't changed checksum but its content was modified in the publish method.
Jing Tao
08:55 AM Bug #7193 (Resolved): MN.publish fails because of the mismatched checksum
The MN.publish method will modify the eml document's content, but it doesn't compute the new checksum and only uses ... Jing Tao
08:50 AM Bug #7192 (In Progress): MN.update method doesn't check the checksum
The the update and create method share the same mechanism to check the checksum. Jing Tao
08:49 AM Bug #7192 (Resolved): MN.update method doesn't check the checksum
The MN.update doesn't check the checksum - it doesn't compute the checksum of the coming object and compare the compu... Jing Tao

05/21/2017

10:36 PM Revision 10318 (metacat): Make the checksum match during the create method.
Jing Tao
10:12 PM Revision 10315 (metacat): Add the code to reget the object input stream after generating the system metadata. Otherwise, the checksum will be wrong.
Jing Tao
10:01 PM Revision 10313 (metacat): Exclude the MockReplicationMNode class in the test method.
Jing Tao

05/20/2017

03:42 PM Revision 10311 (metacat): Add the script to update the version to 2.8.3
Jing Tao
03:41 PM Revision 10310 (metacat): Add the script which update the db to 2.8.3.
Jing Tao
09:44 PM Revision 10302 (metacat): Add the script to update db.
Jing Tao
09:41 PM Revision 10301 (metacat): Add the db upgrade from 2.8.1 to 2.8.2
Jing Tao

05/18/2017

11:51 AM Revision 10300 (metacat): Add the code to remove the pid from the identifier table if the update method failed.
Jing Tao
11:33 AM Revision 10298 (metacat): Add tests to test the miss-matched checkup in the update method.
Jing Tao
09:58 PM Revision 10296 (metacat): Reget the object inputstream in order to calculate the correct checksum.
Jing Tao
08:45 PM Revision 10294 (metacat): Add the checksum as the parameter to the method write.
Jing Tao
08:42 PM Revision 10292 (metacat): Add the code to computer the checksum.
Jing Tao
08:39 PM Revision 10290 (metacat): Add the checksum parameter to the write method.
Jing Tao
08:37 PM Revision 10288 (metacat): Move the checking if the checksum exists into the create method.
Jing Tao
08:34 PM Revision 10286 (metacat): Add the checksum parameter to the method DocumentImple.write.
Jing Tao
08:26 PM Revision 10284 (metacat): Add a method to test the miss-matched checksum for creating a metadata object.
Jing Tao

05/17/2017

03:37 PM Revision 10282 (metacat): Add a new test method to test the miss-matched checksum for the data object.
Jing Tao
03:32 PM Revision 10280 (metacat): Add the checksum as a parameter to the method handleInsertOrUpdate.
Jing Tao
03:26 PM Revision 10278 (metacat): Add the checksum parameter to the handleInsertorUpdate method.
Jing Tao
03:15 PM Revision 10276 (metacat): Add the checksum parameter to the handleInsertAndUpdate method.
Jing Tao
03:12 PM Revision 10274 (metacat): Change the signature of the method handleInsertAndUpdate.
Jing Tao
03:06 PM Revision 10272 (metacat): Add code to check the check sum by the DigestOutputStream.
Jing Tao
09:36 AM Revision 10270 (metacat): Removed the duplicated code to check the checksum in the replicate method since the method D1Node.create, which is called by the replicate method, has the mechanism.
Jing Tao
09:54 PM Revision 10268 (metacat): Revised the method for testing replication. It did nothing but does test the replication between the mock mn and the local host.
Jing Tao
09:50 PM Revision 10266 (metacat): Add the replication source node into the node locator.
Jing Tao
09:47 PM Revision 10264 (metacat): Add some methods to support the replicate.
Jing Tao
09:14 PM Revision 10262 (metacat): Add a mock mn node as the source node during a replication operation.
Jing Tao

05/16/2017

02:23 PM Revision 10260 (metacat): Add a integration test.
Jing Tao
02:22 PM Revision 10259 (metacat): Add two properties will be used in the dataone replication test.
Jing Tao
04:10 AM Bug #7188: MNodeService.replicate() is failing
The purpose of the checksum is to ensure integrity of content written to the data store. Computing a checksum enroute... Dave Vieglais

05/12/2017

12:17 PM Bug #7188: MNodeService.replicate() is failing
It would be best if the stream only has to be read once to be serialized and have the checksum checked, so we don't i... Matt Jones
11:41 AM Bug #7188: MNodeService.replicate() is failing
Chris and I discussed the issue today. We propose the solution this way:
1. Since MN.replicate and D1NodeService.cr...
Jing Tao
08:10 PM Bug #7188: MNodeService.replicate() is failing
But from Chris' table, those failures have started recently (May, 2017). So I am confused.
Before releasing Metaca...
Jing Tao
06:12 PM Bug #7188: MNodeService.replicate() is failing
Bummer that its been there a while. Such a hugely serious bug as this should have been caught by a test. I suggest ... Matt Jones

05/11/2017

04:12 PM Bug #7188: MNodeService.replicate() is failing
Rob confirmed that we have been use the AutoCloseInputStream a while ago. And Metacat has been use the d1_libclient_j... Jing Tao
04:09 PM Bug #7188: MNodeService.replicate() is failing
I debug the replicate method and found the class of input stream is org.apache.commons.io.input.AutoCloseInputStream.... Jing Tao
07:19 AM Bug #7188 (Resolved): MNodeService.replicate() is failing
Laura Moyers reported that she is seeing many failed replication attempts in the Coordinating Node index. In particu... Chris Jones
10:43 AM Revision 10249 (metacat): Add some debug information.
Jing Tao

05/10/2017

08:15 AM Bug #7187 (In Progress): Set file names correctly when reading objects from Metacat
I've modified @generateOutputName@ to use @SystemMetadata.fileName@ when it's available. We'll need to test this in a... Chris Jones
08:05 AM Bug #7187 (Resolved): Set file names correctly when reading objects from Metacat
We now store file names in @SystemMetadata.fileName@. In @MetacatHandler.readFromMetacat()@, we are currently genera... Chris Jones
08:12 AM Revision 10247 (metacat): Change MetacatHandler.generateOutputName() to use the SystemMetadata.fileName value when it is available. Needs testing.
refs https://projects.ecoinformatics.org/ecoinfo/issues/7187 Chris Jones

05/08/2017

10:48 AM Bug #7186 (Resolved): listObjects fails if there is pid with a white space in the list
Jing Tao

05/04/2017

11:49 AM Revision 10245 (metacat): Define location of the AWS binary so the tool works under CRON.
Matt Jones
 

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