Make the REST api work for views.
Add the code to support CNView interface in CNodeService. Both CNodeService and MNodeService share the same code base.
Transform the ObjectFormat from v2 to v1 in getFormat method.
Convert the v2 system metadata object to v1 in the getSystemMetadata method.
The setObsoletedBy only handles PID.
The method setObsoletedBy only hanldes SID.
Add the timestamp for the printing out the start and end of hazelcast synchronization.
Call the method lock.lock() immediately after getting the lock. Otherwise, if an exception happened between the two calls (in another word, lock.lock() was called), lock.unlock() can cause an issue:Current thread is not owner of lock!See https://redmine.dataone.org/issues/6836.
The setReplicationStatus method only supports sid and the setRightsHolder method supports both PID and SID.
Add the code transform a sid to a pid in publish, getPackage and view method. Fefer dataONE #6734.
Fixed a bug that it should use getReplica rather than get method.
The CN.setReplicationPolicy method now only support PIDs. Refer to https://redmine.dataone.org/issues/6734.
Went through the v2 ObjectFormatList and convert every v2 ObjectFormat to v1 ObjectFormat and put them into a v1 objectFormatList.
Add the log messages to indicate the hazelcast synchronization starting and ending.
Add the code to handle sid in the publish method.
Add the code to exclude the sid in the view and getPackage.
Add a converter to convert the V2 Log object to the V1 Log object.
Add the rules to check the if a sid is valid in the updateSystemMetadata method.
Implemented the feature to support the identifier(both sid and pid) feature in the objectLists method.
The MN.listobjects and CN.listobjects methods will call the one in the D1NodeService class.
Add the code to check if the pid is an SID in the registerSystemMetadata method.
Add code to check if the sid equals pid for the method checkSidInRegisterSystemMetadata.
Moved the rules for the SID from D1NodeService.create to MNodeService.create.Also moved the code to check the validation of an pid from D1NodeService.create to MNodeService.create, MNodeService.replicate and CNodeService.create.
Add the code to check if a sid is legitimate in the method create and registerSystemMetadata.
The the code to handle sids on the v2 api - setReplicationPolicy, setReplicationStatus, setAccessPolicy and setObsoletedBy.
Add the code to handle if a identifier is a sid in setAccessPolicy, setReplicationPolicy, setObsoletedBy and setRreplicationStatus.
Add the code to handle SID in the getLogRecords method.
In the getLogRecords method, the pidFilter is checked if it exists.
Fixed a bug that the getLogRecords can't handle the case that the event is null.
Add the code to check the if the new series id is legitimate in the systemMetadataChanged method.
Add the code to support the sereis id on isAuthorized and systemMetadataChanged method.
Add the code to handle the sid in the delete and archive method.
Fixed a bug in comparing two identifiers in the update method.
Add a check that the sid shouldn't equals the pid in the update and create method.
Add the code the check if the format of the sid is valid in the system metadata.
Add the enforcement for the sid in the create method.
Enforce the sid requirement in the update method.
Check if the identifier is a sid for the v1 update.
Add the code to handle the deleted identifier in the checking v1 system metadata existing method.
Enforce the mn.getChecksum only to handle an PID.
Implement the series id in the getSystemMetadata method.
Looking for sid for the method describe.
Refactor the code to check a pid exists in the v1 api.
Modified the get method to handle the sid in the v2 api.
Fixed a bug that the method getLocalId swallowed an exception incorrectly in the IdentifierManager.
Fixed a bug that some service failure exceptions were handled as the NotFound exception.
1. In the identifierExists method, the code to check if the identifier exist on the serial-id fields of the system metadata table.2. Fixed a bug on the identifierExists - it considered an identifier didn't exist when the determining process threw an exception.
Fixed a bug that the reindex of data objects may index an archived data object.
Fixed a bug that the solr index of data files doesn't reflect the change of access control.
Add delete log for data objects on CNs.
Write the input stream into the file system without alteration in dataone create and update methods.
Added the code to inform users the pid was deleted in the NotFound exception.
Added the code to check if a not-found object was deleted in the isAuthorized method.
Remove the system metadata for data objects.
Persitence the system metadata object in the memory before deleting it from hazelcast.
Add the code to delete systemmetadata.
convert v2 SM to v1 SM for the v1 service call response
update to use v2 types for indexing
remove CN.systemMetadataChanged in favor of the CN.updateSystemMetadata method. Otherwise there's no good way to know where to fetch the auth copy from since the SM change might be to switch the authMN!
add support for v2 DataONE API.
Include PDF version of the metadata in the package download. https://projects.ecoinformatics.org/ecoinfo/issues/6053
take advantage of the ezidclient for multi-threaded/asynchronous DOI registration. This will be most useful for doing large batch updates and not so much for the one-at-a-time publish actions but works in either context. https://projects.ecoinformatics.org/ecoinfo/issues/6440
use a member instance of ezid service that only logs in every 24 hours (or other time TBD) instead of every time there is an interaction with the service. Saves us many calls when doing batch updates to ezid but keeps us from trying to use expired sessions. Motivated by https://projects.ecoinformatics.org/ecoinfo/issues/6440
do not set archived=false for all CN.create calls. The CN will use create() even harvesting content that is new to it and needs to handle already-archived content. https://projects.ecoinformatics.org/ecoinfo/issues/6475
correct the ORE lookup query syntax and add junit assertion to check that it continues to function as expected. https://projects.ecoinformatics.org/ecoinfo/issues/6529
recursively submit obsoleted objects for indexing when instructed. https://projects.ecoinformatics.org/ecoinfo/issues/6424
include a few tests for isEqual method. https://projects.ecoinformatics.org/ecoinfo/issues/6407
Change isEqual to private so it can be used by test suite
add comment (and commented out code) for possibly inspecting the /dirtySysMeta call for archive=true flag. https://projects.ecoinformatics.org/ecoinfo/issues/6417
call getDescription on cn.setaccesspolicy service failure
make all objects in a package publicly readable when published. https://projects.ecoinformatics.org/ecoinfo/issues/6415
make all package contents publicly readable when publishing with a DOI. https://projects.ecoinformatics.org/ecoinfo/issues/6415
Run syncAll in a single thread so admin config UI doesn't freeze
Change CnodeService.archive() to no longer broadcast MN.archive() calls to all of the replica MNs of a pid, but rather broadcast MN.systemMetadataChanged().
Couple modifications:-use "pid" throughout so as not to confuse docids and pids-ensure any failures in the set do not prevent synching for other pids in the set
do not set sm.archived=true when generating system metadata for objects that come in via the old Metacat API.
Fixed bug where sync'ing not working when CN had more access rules than MN
can only log events with a valid localId.
Fixed Exception declaration problem
minor changes to error msgs
Sync access policy between mn -> cn in case where metacat native ui being used to update ap on mn
Unify solr indexing with an IndexTask that is added to the queue -- allows us to send more than just the systemMetadata to the indexer. Initially this is for READ event counts for each document. https://projects.ecoinformatics.org/ecoinfo/issues/6346
On changes to system metadata in CNodeService and DocumentImpl, increment the serialVersion.
(task #6297): sync pid(s) access policy between member node and coordinating node
Change CNodeService's archive() and delete() methods to only update Member Nodes in the replica list (not CNs!), since calling CN.archive() again would cause an infinite loop. Thanks for catching this Ben.
Update CNodeService.delete() and .archive() to handle situations where the pid is of formatType DATA, and therefore are not registered in the identifier table, and caused NotFound exceptions. For DATA objects, we just update the system metadata now, and for all other objects (METADATA, RESOURCE), we continue to use super.{delete()|archive()}. Also, log the delete/archive into the event log....
Remove the broadcastSystemMetadataChange() method since it was a duplicate of notifyReplicaNodes(). Consolidated now.
retrieve the given file names (entityName) of the data files from the EML and use those for our file names in the BagIt content.
Change the BagIt file names to the pid+resource type. Create new Files instead of createTempFile to avoid the randomly generated numbers in the name.
Add the code to set the replication status when some exceptions happen.
generate ORE object when publishing even if there was not an ORE for the original package. https://projects.ecoinformatics.org/ecoinfo/issues/6194
Add the methond named isAuthoritativeMNodeAdmin method. It applies to both CN and MN methods.
On calls to archive(), log the correct call (not delete()).
Fixed a bug that the group information couldn't be retrived from the session.
Change the guid.ezid.uritemplate.metadata property value to the hostname only, with no context
do not modify existing SystemMetadata on MN.update() if something goes wrong during content insertion. https://projects.ecoinformatics.org/ecoinfo/issues/6101
require authenticated session when minting a DOI/other identifier. https://projects.ecoinformatics.org/ecoinfo/issues/6086