fix typos/compilation
Change to use AuthFile constructor.
Add code to check if groups is null.
Sync access policy between mn -> cn in case where metacat native ui being used to update ap on mn
Consolidate the user/group utitlities code.
Change the element name in the user from "group" to "memberof".Fixed a bug that in groupadd.
Add methods to handle modify user's attributes.
Complete the method - handleUseradd.
Add code to handle useradd command.
Fixed a bug that showing illegal options in the groupadd command.
Add a main method which will be used in the command line users management tool.
Add the code to handle the organization name.
Add the getUserInfo method.
Add the common name, organization name and email into the getprincipal method.
Add some contants.
Add the description in the getGroups methods.
Add the common name and email address information into the getUsers method.
Fixed a bug that the method addUser didn't set password.
Change the code to use BCryptHash to protect password.
Unify solr indexing with an IndexTask that is added to the queue -- allows us to send more than just the systemMetadata to the indexer. Initially this is for READ event counts for each document. https://projects.ecoinformatics.org/ecoinfo/issues/6346
Add code to get user info and group info for an alias.
Add the code to handle the login action if it is an alias.
Add the methods to get the aliased dn through non-tls or tls.
Add a method to get the aliasedDn.
On changes to system metadata in CNodeService and DocumentImpl, increment the serialVersion.
(task #6297): sync pid(s) access policy between member node and coordinating node
Change CNodeService's archive() and delete() methods to only update Member Nodes in the replica list (not CNs!), since calling CN.archive() again would cause an infinite loop. Thanks for catching this Ben.
Update CNodeService.delete() and .archive() to handle situations where the pid is of formatType DATA, and therefore are not registered in the identifier table, and caused NotFound exceptions. For DATA objects, we just update the system metadata now, and for all other objects (METADATA, RESOURCE), we continue to use super.{delete()|archive()}. Also, log the delete/archive into the event log....
Remove the broadcastSystemMetadataChange() method since it was a duplicate of notifyReplicaNodes(). Consolidated now.
Add some log information.
retrieve the given file names (entityName) of the data files from the EML and use those for our file names in the BagIt content.
Change the BagIt file names to the pid+resource type. Create new Files instead of createTempFile to avoid the randomly generated numbers in the name.
Add a description element for the group.
Change the user id from the name to the uid.
Add the method to get the principals.
Add the methods about reset and change password.
Add method to get groups and users.
Read the password from property file.
Encrypt the password.
Fixed an issue to check if an account exists.
Add a file based authentication mechanism.
Add the code to set the replication status when some exceptions happen.
generate ORE object when publishing even if there was not an ORE for the original package. https://projects.ecoinformatics.org/ecoinfo/issues/6194
set registry permissions when configuring the exploded war on *nix systems. https://projects.ecoinformatics.org/ecoinfo/issues/4690
Add the methond named isAuthoritativeMNodeAdmin method. It applies to both CN and MN methods.
On calls to archive(), log the correct call (not delete()).
change method name from copy and paste.
use 2.3.0 for this next release of metacat.
Fixed a bug that the configuration page shows complete even though the DataONE configuration hadn't done yet.
Add a util class for dataone configuration.
Add code the display the SchemaModification exception.
Fixed a catch clause syntax which is only compatible with java 1.7.
Add code the overwrite the schema.xml in the solr-home/conf.
Fixed a bug that the group information couldn't be retrived from the session.
Change the guid.ezid.uritemplate.metadata property value to the hostname only, with no context
correctly configure metacat-index to use metacat context/deployment location. https://projects.ecoinformatics.org/ecoinfo/issues/6138
Reviewed code for all uses of FileInputStream, checking to see if the method should be closing the stream, and if so, closing it in the method as well as in the finally clause to ensure we don't leak file descriptors.
Sparate the action reindex and reindexall.
Closing some more streams that were left open. This Bug #6136 seems to be pervasive and is going to require an extensive audit to find all of the places where streams are not closed properly.
Refactor to use IOUtils.closeQuietly() which handles nulls and streams that are already closed.
Added close() to finally block for readFromFileSystem() call.
Closing FileOutputStream handles so that the OS limits on filehandles are not exceeded.
Add code to delete existing records for a id when we try to add the id to the index_event table.
do not modify existing SystemMetadata on MN.update() if something goes wrong during content insertion. https://projects.ecoinformatics.org/ecoinfo/issues/6101
Refer to metacat.war deployments since those are now the default. https://projects.ecoinformatics.org/ecoinfo/issues/6082
use UTF-8 if request encoding not given. https://projects.ecoinformatics.org/ecoinfo/issues/6100
require authenticated session when minting a DOI/other identifier. https://projects.ecoinformatics.org/ecoinfo/issues/6086
include the dataone.subject (node admin) in the list of administrators. This allows full administrative access to objects when using certificates+d1 api. https://projects.ecoinformatics.org/ecoinfo/issues/6086
use optional template for registering DOIs at a given target. https://projects.ecoinformatics.org/ecoinfo/issues/6092
only attempt to generate OREs for objects that we know not to have them already. https://projects.ecoinformatics.org/ecoinfo/issues/6061
Generate an ORE when sci metadata is added via the Metacat API.https://projects.ecoinformatics.org/ecoinfo/issues/6061
better checking for ORE maps when publishing DOIs (need to update the packages that contain sci meta). https://projects.ecoinformatics.org/ecoinfo/issues/6061
implement ORE check method to actually query the MN for OREs that reference the given pid.https://projects.ecoinformatics.org/ecoinfo/issues/6061
change hazelcast group name to match the current context. https://projects.ecoinformatics.org/ecoinfo/issues/5624
check both previous and current data revisions when updating packages. https://projects.ecoinformatics.org/ecoinfo/issues/5647
avoid SQL errors when processing very old objects of type: "-//ecoinformatics.org//eml-access-2.0.0beta6//EN"
If the pathquery engine is disabled, the xml path index queue will be disabled as well.
If the xpath query is disabled, the query, squery and spatial_query action will be disabled as well.
Add code to throw an exception if the pathquery is not enabled.We also need to disable building index if the pathquery is disabled.
use consistent file names and zip content names. Opted for "-" separator so that the zip writer does not remove the unique part of the filename. https://projects.ecoinformatics.org/ecoinfo/issues/6054
copy the original systemMetadata when publishing a revision in order to avoid overwriting the original values - the shared map is listening! https://projects.ecoinformatics.org/ecoinfo/issues/6014
include user's fullName when validating a session. also, allow cookie session to be used if not passed in directly as a parameter
Add code to modify the web.xml in metacat-index context if the metacat's name is not knb.
include filename in the package download, though we can;t really use the PID because of all the potential characters in it that are not valid for filesystems.
type the doctype="metadata" objects as "FGDC-STD-001-1998" formatId for rendering XSLT and for DataONE SystemMetadata.
use custom FileInputStream subclass to delete the temporary bagit zip when the inputstream is closed (after someone has downloaded the zip).
use ObjectFormatCache instead of ObjectFormatService because we are not calling it as a CN.
allow running the Harvester client without a source code checkout. (D. Blankman comments)
include the localid when rendering the view (used in stylesheets)
use ObjectFormatCache.getInstance().getFormat() instead of the CN service (the MN does not typically act as a CN!)
add slash for harvesterRegistration redirect.
include mn.publish() REST endpoint handling. https://projects.ecoinformatics.org/ecoinfo/issues/6024
comment out the index queue call when archive() is called - I think it is causing the duplicate events for the listener. https://projects.ecoinformatics.org/ecoinfo/issues/6030
implement the view service (uses existing skin-based dbtransform) - and include the REST endpoint. https://projects.ecoinformatics.org/ecoinfo/issues/6028
use StreamSource instead of StringReader for method signature -- can be used with different sources this way. https://projects.ecoinformatics.org/ecoinfo/issues/6019
clean up DBTransform in preparation for "view" service. https://projects.ecoinformatics.org/ecoinfo/issues/6019
include GET /package/{pid} endpoint in MN service. https://projects.ecoinformatics.org/ecoinfo/issues/6027
MN.getPackage() - test with ORE that includes 2 data files and a "metadata" file (still should be using EML for that test). https://projects.ecoinformatics.org/ecoinfo/issues/6026
First pass at MN.getPackage() implementation using Bagit library from LOC. https://projects.ecoinformatics.org/ecoinfo/issues/6026
add method for publishing existing object (usually assumed to be scimeta) with a DOI. https://projects.ecoinformatics.org/ecoinfo/issues/6014