Metacat

This is just a code cleanup patch that re-aligns some indentations and removes
some debugging code.

As a partial fix to http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2747,
I've modified AuthLdap.getGroups() and removed the code that handles LDAP
referral connect and search timeout issues in a separate thread. I've replaced
this code with ReferralException code that uses two JNDI parameter settings:...

As a partial fix to http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2747,

I'm applying 3 patches to AuthLdap.java that simplify the code that addresses
timeout issues when connecting and searching referral LDAP databases, fixes the
getGroups() method to correctly get groups in referral LDAP databases, and does...

As part of a fix for http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2747,
I'm adding a few configuration parameters to metacat.properties:

1) ldapconnecttimelimit limits the time in milliseconds allowed for
LDAP server connections. This reduces the impact of any single...

Added note to README regarding buildIndex fixes in bug 2469

Fixed the implementation of the buildIndex function which was not
working for new document insertions. A previous fix in updatePathIndex
for ATTRIBUTE data inadvertantly caused a foreign key duplication
exception for insertions of ELEMENT nodes when multiple relative paths...

Added additional organizations to the login dropdown list for the
Kruger skin.

Add code to handle double quotes in normalize method.

I'm fixing a compile problem under jdk 1.4.2, where the get() method in
HashMap needs an Object as a parameter, not a primitive data type. I changed
the long to a Long as the lookup key.

As part of a patch fix for:

http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2469

I've changed DocumentImpl.java in three locations:

buildIndex()
  traverseParents()
  updatePathIndex()

This patch modifies buildIndex(). Like the prior two patches, it changes...