Morpho

03/15/2013

03:14 PM Bug #5888: Couldn't log in as a NCEAS account in Morpho

reverted ECP client to use OpenSAML 2.5.1 instead of 3.0-SNAPSHOT because they'd moved to Java 7 and were not plannin... ben leinfelder

03/09/2013

09:32 AM Bug #5889: Update documentation and installers to require Java 7

Actually, I decided to downgrade OpenSAML to the stable released version of 2.5.1 which does not require Java 7. The ... ben leinfelder

03/08/2013

04:01 PM Bug #5889 (Resolved): Update documentation and installers to require Java 7

ECP is using OpenSAML 3.0 that is now requiring Java 7. ben leinfelder

11:13 AM Bug #5888 (Resolved): Couldn't log in as a NCEAS account in Morpho

When I tried to log in the DataONE network as a NCEAS account, i got this error:
[java] Could not authenticate: org... Jing Tao

03/07/2013

03:48 PM Bug #5887 (New): Handle the query result set which contains the revision chains of documents

Morpho network query now experiences a performance issue because the merge of the network and local search results.
... Jing Tao

03/05/2013

03:07 PM Bug #5860: When morpho saves a network data package to local, the system metadata may contain id (obsoletes) which doesn't exist

Add the code to set the obsoletes element in the system metadata and the revision manager even though the obsoleted i... Jing Tao

03/04/2013

05:10 PM Bug #5860: When morpho saves a network data package to local, the system metadata may contain id (obsoletes) which doesn't exist

Jing and I talked about a related issue today and decided that we CAN leave the <obsoletes> values in local system me... ben leinfelder

05:06 PM Bug #5799: publish using DOI feature

Decided to include this in 2.0.0 release since the site review deadline has already passed. ben leinfelder

05:04 PM Bug #5886 (Resolved): Rework AccessPolicy and ReplicationPolicy editing

1. Move "Edit XXX Policy..." from the Documentation menu into File menu.
2. Add "Inherit from package" checkbox to t... ben leinfelder

02/27/2013

11:54 AM Bug #5885: Upgrading EML version causes access policy to be lost

Looks good - thanks, Jing! ben leinfelder

09:45 AM Bug #5885: Upgrading EML version causes access policy to be lost

Before the upgrading, the system metadata should be preserved. Then we set it backup when the upgrading is done.
Af... Jing Tao

09:31 AM Bug #5885: Upgrading EML version causes access policy to be lost

If i didn't upgrade the eml version and saved it locally, the access policies can be preserved in the system metadata... Jing Tao

09:19 AM Bug #5885: Upgrading EML version causes access policy to be lost

Here is an example EML 2.0.1 file that has an accessPolicy set in SystemMetadata. When I open it by id in Morpho (aft... ben leinfelder

08:58 AM Bug #5885: Upgrading EML version causes access policy to be lost

My hunch is that the original SystemMetadata (from the MN) is discarded during the upgrade process and new SystemMeta... ben leinfelder

02/26/2013

10:21 PM Bug #5885 (Resolved): Upgrading EML version causes access policy to be lost

Matt saved a DataONE package to the MN using R, but the EML was 2.0.1 and had no access rules in it. The SystemMetada... ben leinfelder

02/25/2013

03:58 PM Bug #5881: How can we change the access policy for the resource map document

Now saving the ORE systemMetadata changes locally when setting access policy and replication policy. ben leinfelder

02:55 PM Bug #5881: How can we change the access policy for the resource map document

I hadn't written code to do that since I thought no one would ever see it, but if we save a local package to the netw... ben leinfelder

02:49 PM Bug #5881: How can we change the access policy for the resource map document

I just tested to change a local data package's access policy. The resource map file still keeps the same. In other wo... Jing Tao

02:08 PM Bug #5869: Test morpho 2.0 on windows

I think we can close the bug. Jing Tao

02/22/2013

11:50 PM Bug #5876: Modify the Access Page for users easily inputting a DN

Looks good, Jing. I added the internationalization string for the checkbox. ben leinfelder

11:49 PM Bug #5882: Get a system metadata version number error when morpho tried to change the access policy of a network document

Until we have a better solution, I have changed the code to always look up the latest serialVersion from the CN befor... ben leinfelder

09:26 PM Bug #5882: Get a system metadata version number error when morpho tried to change the access policy of a network document

If you reopen the package, you should get the updated SystemMetadata (serial version 1) and be able to update the acc... ben leinfelder

05:10 PM Bug #5882 (Resolved): Get a system metadata version number error when morpho tried to change the access policy of a network document

When I tried to change the access rule of a network document, i got this error:
The requested system metadata vers... Jing Tao

11:46 PM Bug #5881: How can we change the access policy for the resource map document

Now setting the ORE permissions when setting EML permissions on the CN. Using the naming convention where "resourceMa... ben leinfelder

04:59 PM Bug #5881: How can we change the access policy for the resource map document

Making it match the EML document is the best course for now I think. It will be confusing to have a separate approac... Matt Jones

04:56 PM Bug #5881 (Resolved): How can we change the access policy for the resource map document

When we create a data package with a data object by the new data package wizard and entity wizard, a resource map doc... Jing Tao

03:54 PM Bug #5878: Test morpho 2.0 on linux

Built installer on linux. Ran installer. launched Morpho using "./morpho" script. Logged in. Saved package. Updated p... ben leinfelder

07:52 AM Bug #5878 (Resolved): Test morpho 2.0 on linux

Especially the installer, the startup script and the menu rendering. ben leinfelder

03:19 PM Bug #5879: Merge ECP IdP list from CILogon with local configuration

Now merging the two lists. to actually release morpho we should comment out the test IdP entries in config.xml ben leinfelder

08:02 AM Bug #5879 (Resolved): Merge ECP IdP list from CILogon with local configuration

CILogon keeps a simple list of ECP-enabled IdPs that we can read from to get new members that support that protocol. ... ben leinfelder

07:49 AM Bug #5877: Updating the access rule cause the data package being modified

If the data package you opened had an existing <access> block, we remove it from the EML when setting the access poli... ben leinfelder

02/21/2013

11:31 PM Bug #5877 (Resolved): Updating the access rule cause the data package being modified

I opened a local data package and use the menu Document|Access Information to add an access rule for it. However, the... Jing Tao

11:02 PM Bug #5805: Local and Network revisions show at same time in search results

Now only filtering if there are network results to filter. This is an improvement, but still means we check if the ne... ben leinfelder

03:36 PM Bug #5805: Local and Network revisions show at same time in search results

Jing's idea is to process the network search results to see if the local hits are in the older versions of the networ... ben leinfelder

05:44 PM Bug #5873: Change [invisible] Login button to hyperlink button

Instead, we just needed to make the button non-transparent. ben leinfelder

03:38 PM Bug #5873 (Resolved): Change [invisible] Login button to hyperlink button

In Windows (7) the "Login" button only shows the text and no border or button-looking outline. Since we use a hyperli... ben leinfelder

04:26 PM Bug #5876 (Resolved): Modify the Access Page for users easily inputting a DN

In today's meeting, Chris mentioned how a user inputted a DN rather than chose one from the tree. I took a look and f... Jing Tao

02:06 PM Bug #5869: Test morpho 2.0 on windows

After updated the d1_common, i tested morpho against Metacat MN and GMN. It worked well to me. Jing Tao

01:28 PM Bug #5869: Test morpho 2.0 on windows

Updated d1_common_java (will be in 1.2-SNAPSHOT) to let the OS decide which temp directory to use. Let's give that a ... ben leinfelder

11:05 AM Bug #5869: Test morpho 2.0 on windows

i am sending an email to him. Jing Tao

11:03 AM Bug #5869: Test morpho 2.0 on windows

There's no reason to specify a temp directory - we can let the OS decide where to put them. Will talk with Rob about ... ben leinfelder

10:49 AM Bug #5869: Test morpho 2.0 on windows

The issue is in the d1_common_java module.
The method generateTempFile() in the SimpleMultipartEntity creates a temp... Jing Tao

09:49 AM Bug #5869: Test morpho 2.0 on windows

After updated the ECP lib, now I can log in. However, when i saved a data package to the network, I got this error:
... Jing Tao

07:51 AM Bug #5872: Irregularities with access control

EMG,
In Metacat 2.x, support for "denyFirst" access control rules was removed so that we more closely match the DataO... ben leinfelder

06:17 AM Bug #5872 (New): Irregularities with access control

Dear Metacat and Morpho developers,
I am using metacat 2.0.3 and morpho 1.10.0. There seems to be a problem with s... unknown unknown

02/20/2013

11:44 PM Bug #5869: Test morpho 2.0 on windows

I converted the CSR generation in the ECP client code to use Bouncy Castle rather than the classes that were removed ... ben leinfelder

05:33 PM Bug #5823: Improve save-to-network performance

I did a test to save the almost same data packages (an eml document to describe the same data file) into the network ... Jing Tao

02/19/2013

06:09 PM Bug #5869: Test morpho 2.0 on windows

benMac, would you please run Morpho from the trunk? Today i just fixed a bug about the upgrading the upgraded profile... Jing Tao

05:34 PM Bug #5869: Test morpho 2.0 on windows

But then when I relaunch Morpho it fails with these messages (I see some progress bars briefly so perhaps this versio... ben leinfelder

05:25 PM Bug #5869: Test morpho 2.0 on windows

Creating a new profile using RC-1 in Win 7, I got this warning message:
"C:\Users\Visitor\.morpho\profiles\brl\data\.... ben leinfelder

03:41 PM Bug #5869: Test morpho 2.0 on windows

I tested the morpho from the trunk on a Windows 7 VM in my linux box. The issue i saw is that i can't log in. But i c... Jing Tao

03:56 PM Bug #5871: The revision manager contains the data files from different profile after upgrading morpho 1.x to 2.0

In the RevisionUpdater class, there is structure to keep the revisions. We didn't reset it after upgrading a profile.... Jing Tao

01:26 PM Bug #5871 (Resolved): The revision manager contains the data files from different profile after upgrading morpho 1.x to 2.0

A Revision Manager in Morpho 2.0 manages the data objects in a single profile. So every profile has a Revision Manage... Jing Tao

01:28 PM Bug #5870: Make sure that a newly generated profile doesn't need upgrade

When morpho generates a new profile, it will set the id-file map to be true. So morpho will not upgrade the new profi... Jing Tao

02/18/2013

10:48 PM Bug #5870 (Resolved): Make sure that a newly generated profile doesn't need upgrade

Today, i created a new profile in morpho 2.0.0. I closed morpho and restart again. I saw an upgrade sign during the s... Jing Tao

05:24 PM Bug #5869: Test morpho 2.0 on windows

For the CCIT meeting I built RC1 installers and made them available here:
http://bespin.nceas.ucsb.edu/dataone/downlo... ben leinfelder

05:14 PM Bug #5869 (Resolved): Test morpho 2.0 on windows

Both Ben and I are working morpho on Mac OS X. We need to test it on windows.
The tests inlcude:
1. Upgrade the mo... Jing Tao

05:23 PM Bug #5805: Local and Network revisions show at same time in search results

When there are many local documents, it can take a long time to check the network for newer versions of the document.... ben leinfelder

11:55 AM Bug #5805: Local and Network revisions show at same time in search results

Now checking if the network revision history has a newer version of the local package. ben leinfelder

05:02 PM Bug #5858: Does the system metadata need the obsoletedBy element?

In the local save and delete processes, the obsoletedBy element is handled. Jing Tao

12:40 PM Bug #5809: Default save behavior to always include local store

Does this effectively communicate that Local saving is required? ben leinfelder

12:15 PM Bug #5863: After deleting the newest version of a package locally, the search and open don't show the previous version

Add the code to remove the deleted docid from the revision history during the delete process. This bug was fixed. Jing Tao

02/15/2013

10:30 AM Bug #5868: Some weird behavior when morpho deletes a network data package with data file

The problem is there is no null check for the id. If an id is null, the anotherId.equal(id) will have NullPointerExce... Jing Tao