Ecoinformatics Redmine

11/06/2009

01:02 PM FIRST Bug #4536: IE6 causes socket connection error on download

googling around for solutions has not shed any light on this error...and it does work with IE7 and IE8...
ben leinfelder

12:52 PM FIRST Bug #4536 (Resolved): IE6 causes socket connection error on download

When attempting to download with IE6 - there is a "Broken pipe" SocketConnection exception thrown when flushing the r... ben leinfelder

11:44 AM Kepler Bug #4512: missing entries with multiple copies of the same KAR file in a single repository

now that i've seen this...it's very confusing indeed!
I think it's absolutely fine to have the "same" (LSID matches) ... ben leinfelder

09:05 AM Kepler Bug #4527: reports cannot be loaded when InstanceAuthNamespace changes

this should work now that the LSID is not being changed when the workflow opens in a new namespace (kepler) instance ben leinfelder

08:30 AM Kepler Bug #4527: reports cannot be loaded when InstanceAuthNamespace changes

also: just opening a plain old XML workflow file from a different InstanceAuthNamespace results in a new LSDI being a... ben leinfelder

08:24 AM Kepler Bug #4527: reports cannot be loaded when InstanceAuthNamespace changes

The workflow in question has an LSID of:
urn:lsid:gamma.msi.ucsb.edu/OpenAuth/:964:30:97
when I step through opening ... ben leinfelder

09:05 AM Kepler Bug #4224: New LSID generated when opened from KAR

i commented out the new LSID line - hopefully this does not have negative consequences for other parts of the system. ben leinfelder

08:39 AM Kepler Bug #4224: New LSID generated when opened from KAR

The LSID is still being changed when we have a new InstanceAuthNamespace. This is causing some problems with reports ... ben leinfelder

11/05/2009

04:42 PM Kepler Bug #4533: printing from the report viewer prints the workflow editor content

Do we have a solution (even an idea) about how to change the Menu bar based on the current view? I'm thinking that we... ben leinfelder

01:37 PM FIRST Bug #4451: Permissions granted cannot seem to be revokable

we're still running a few test on the Metacat side of things.
I feel good about the Morpho side - enough so that I th... ben leinfelder

11/04/2009

02:36 PM FIRST Bug #4451: Permissions granted cannot seem to be revokable

putting the new Metacat code through some development testing.
found a few issues - working with Mike to resolve. ben leinfelder

11:42 AM Kepler Bug #4525: saved KAR and memory report can be out of sync

Upon further investigation, it seems that the ReportLayout (object) is being modified as it resides in the cache. So ... ben leinfelder

09:08 AM Kepler Bug #4525: saved KAR and memory report can be out of sync

sounds like we need to "clear out the memory" when we close the window for this workflow/layout.
this should probably... ben leinfelder

10:47 AM Kepler Bug #4528: BREAK_BEFORE property for report sections does not work

had slightly incorrect xpath in the XSL ben leinfelder

08:41 AM Kepler Bug #4528: BREAK_BEFORE property for report sections does not work

this was working at one point. ben leinfelder

09:19 AM Kepler Bug #4512: missing entries with multiple copies of the same KAR file in a single repository

If i'm imagining this correctly, it would be the same as having any other "components" show up multiple times in the ... ben leinfelder

09:16 AM Kepler Bug #4510: can't add local repository if its name begins with the name of another local repository

it would be good to get this squared away for the wrp "release" ben leinfelder

08:59 AM Kepler Bug #4529: NPE while saving KAR crashes Kepler

aaron - can you take a look at this since the stack trace looks to be around ActorMetadataKAREntryHandler?
ben leinfelder

08:57 AM Kepler Bug #4530: changing a KAR outside of a Kepler session fails without a clean-cache

Because objects are cached (report layouts, workflows, etc) I think it's reasonable to encounter the behavior you see... ben leinfelder

08:49 AM Kepler Bug #4527: reports cannot be loaded when InstanceAuthNamespace changes

Transporting the InstanceAuthNamespace is unacceptable.
One of the major reasons for having KARs is for sharing them ... ben leinfelder

10/27/2009

05:05 PM Kepler Bug #4508: report viewer should listen for executions to finish

added handling for the event being broadcast by reporting ben leinfelder

01:11 PM FIRST Bug #4452: Meta data associated with assessement items is incorrectly retrieved in the downloaded data package

Jay is reporting metadata missing ben leinfelder

10/22/2009

12:33 PM Kepler Bug #4483: Module dependencies in MoML files

a class-based decision about which modules are required won't work in cases where we are using class overrides... ben leinfelder

11:46 AM Kepler Bug #4481: KNB authentication and pulling data

i've added the endpoint to the name of the EML datasource so that they both show in the result set if you have both s... ben leinfelder

09:23 AM Kepler Bug #4481: KNB authentication and pulling data

What do you think it _should_ look like when you end up searching what are essentially the same sources? Right now th... ben leinfelder

10/21/2009

04:17 PM Kepler Bug #4483: Module dependencies in MoML files

You can still execute the workflow after skipping those class not found exceptions when you open the workflow - but i... ben leinfelder

11:48 AM Kepler Bug #4439: reporting displays output for a different actor

This is looking more and more like an intricacy of Provenance recording. My hunch is that when you first add the RExp... ben leinfelder

11:22 AM Kepler Bug #4436: composite actor output ports cannot be added to reports

Did some more investigation:
-we can allow CompositeActor ports to be added to the report layout, but provenance isn'... ben leinfelder

10:28 AM Kepler Bug #4441: reporting fails to output figure

I removed the ProvenanceRecorder and ReportingListener entries from the MOML of the bovine workflow. Then I opened th... ben leinfelder

09:31 AM Kepler Bug #4469: Report Viewer - labels take up too much space

increased the proportional width of the center (main content) column ben leinfelder

08:55 AM Kepler Bug #4276: RExpression temp files can collide

included in r21133 now ben leinfelder

08:53 AM Kepler Bug #4276: RExpression temp files can collide

i had to add an extra display actor so that type checking did not fail on the second run of the workflow, but that's ... ben leinfelder

08:52 AM Kepler Bug #4276: RExpression temp files can collide

about to submit the fix that oliver provided. ben leinfelder

10/20/2009

05:25 PM Kepler Bug #4470: Report Viewer - labels should be vertically centered

used this FOP property in the table-cell: display-align="center" ben leinfelder

05:08 PM Kepler Bug #4468: Report Viewer - message to run workflow first

added MessageHandler.message() if no previous executions were found. i believe that's less intrusive than rearranging... ben leinfelder

04:56 PM Kepler Bug #4474: Report viewer - enable scroll wheels

this is actually a FOP limitation...this is in the FOP source for PreviewPanel class that we use:
"// FIXME should ad... ben leinfelder

03:59 PM Kepler Bug #4471: Report Viewer - remove TOC

removed from the configuration in WRP suite. ben leinfelder

03:58 PM Kepler Bug #4472: Report Viewer - use different ViewPane class

added SingleViewPane class and am now using it in the WRP suite for the Report Viewer view ben leinfelder

03:33 PM Kepler Bug #4466: Report Designer - report layout not shown when opening KARs

using the event-state module to broadcast to the report layout UI that the report layout model has changed and that i... ben leinfelder

10/16/2009

12:17 PM Kepler Bug #4477 (Resolved): Grey out "undraggables"

In the Components tree we now have non-workflow items (items contained in KARs). These should be marked as different ... ben leinfelder

12:15 PM Kepler Bug #4475 (Resolved): Order context menu items consistently

There is a mix of options, sure, but options that appear across different context menus (ie "Open") should appear in ... ben leinfelder

12:08 PM Kepler Bug #4474 (Resolved): Report viewer - enable scroll wheels

The viewer does not respond to scroll wheel actions currently. It should! ben leinfelder

12:06 PM Kepler Bug #4473 (Resolved): Add WRM to bottom of report viewer for navigation

Still need to design exactly how this will work out. ben leinfelder

12:05 PM Kepler Bug #4472 (Resolved): Report Viewer - use different ViewPane class

We have too many unused "areas" of the view where it looks like there should be some other window hidden. we just nee... ben leinfelder

12:02 PM Kepler Bug #4471 (Resolved): Report Viewer - remove TOC

the "Report Contents" tab is mostly useless - remove it from this view ben leinfelder

12:00 PM Kepler Bug #4470 (Resolved): Report Viewer - labels should be vertically centered

Instead of appearing at the top of the item that they are labeling, L and R labels should be in the vertical center o... ben leinfelder

11:58 AM Kepler Bug #4469 (Resolved): Report Viewer - labels take up too much space

left and right labels seem to hog real estate unnecessarily. ben leinfelder

11:57 AM Kepler Bug #4468 (Resolved): Report Viewer - message to run workflow first

If switched to the report viewer before running a workflow, there should be a message indicating that you must run th... ben leinfelder

11:54 AM Kepler Bug #4467 (Resolved): WRP - restarting/reopening Kepler throws error

Chad reported this during devLunch:
error restarting/opening Kepler:
"ERROR (org.kepler.reporting.rio.fop.ReportPa... ben leinfelder

11:29 AM Kepler Bug #4466 (Resolved): Report Designer - report layout not shown when opening KARs

If I save a workflow+report layout as a KAR and then attempt to reopen the KAR after restarting Kepler, the report la... ben leinfelder

11:24 AM Kepler Bug #4465 (Resolved): Report Designer - "drag to here" paper should disappear

After we have one or more items on the report we should hide the helpful "drag here" paper. If all items are deleted ... ben leinfelder

11:23 AM Kepler Bug #4464 (Resolved): Report Designer - selection pointer behavior

-do not use cross hair pointer anywhere
-arrow turns to finger on hover over any item (anywhere on item except text ... ben leinfelder

11:19 AM Kepler Bug #4161: Develop kepler workflow execution engine

re-targeting to wrp module, although it may be a 2.0 bug to extend kepler so that it can receive user credentials whe... ben leinfelder

10/15/2009

04:01 PM FIRST Bug #4452: Meta data associated with assessement items is incorrectly retrieved in the downloaded data package

note: "" vocabulary is now "default" so that there is no confusion about empty cells in download - this is part of th... ben leinfelder

03:58 PM FIRST Bug #4452: Meta data associated with assessement items is incorrectly retrieved in the downloaded data package

I've addressed the following:
-blank vocabulary columns for repeated vocabs (requires new Morpho build)
-improper col... ben leinfelder

11:23 AM FIRST Bug #4452: Meta data associated with assessement items is incorrectly retrieved in the downloaded data package

i've fixed this for the non-transposed data download - you should see all metadata fields correctly on fred now.
for... ben leinfelder

09:39 AM FIRST Bug #4452: Meta data associated with assessement items is incorrectly retrieved in the downloaded data package

Trying to track this down...but now since the permissions were tinkered with I can't actually access the data file.
I... ben leinfelder

03:59 PM FIRST Bug #4376: "?column?" appears as the header for last foil in downloaded data

resolved as best i can at this point. at least it is not preventing us from accessing some of the crucial transpose f... ben leinfelder

02:54 PM FIRST Bug #4376: "?column?" appears as the header for last foil in downloaded data

i've addressed this for the metadata fields - which is crucial for generating the "transposed" data download ben leinfelder

09:25 AM FIRST Bug #4451: Permissions granted cannot seem to be revokable

I see that we were using a more "generous" permissions mode in metacat where we process all of the "deny" rules first... ben leinfelder

10/09/2009

03:07 PM Kepler Bug #4441: reporting fails to output figure

Will this workflow ever run on OS X? ben leinfelder

02:58 PM Kepler Bug #4441: reporting fails to output figure

i'm finding that reporting classes do not seem to be invoked when running this workflow.
have to track it down furthe... ben leinfelder

12:10 PM Kepler Bug #4441: reporting fails to output figure

what are the R package dependencies i need?
"sp"
"rgdal"
etc?
ben leinfelder

09:48 AM Kepler Bug #4441: reporting fails to output figure

is there anything on the console that indicates an error/exception with the FOP rendering? ben leinfelder

09:43 AM Kepler Bug #4440: null pointer exception on viewing report when workflow has not been run

added check for null last execution id - will not try to continue assembling/rendering report if no execution is found. ben leinfelder

08:53 AM Kepler Bug #4443: gui-free class for provenance store settings

This is true of the "ReportingListener" as well - it requires that the workflow was authored in the gui (and saved) b... ben leinfelder

08:48 AM Kepler Bug #4436: composite actor output ports cannot be added to reports

while inconvenient, it sounds like you can still get the Token that passes through this port. sort of a "work around"... ben leinfelder