Ecoinformatics Redmine

06/04/2010

02:52 PM Morpho Bug #3473: allow user to attach, replace, or delete data table on existing entity description

I believe I've addressed the various permutations described in this bug - reopen as necessary. ben leinfelder

01:53 PM Morpho Bug #3473: allow user to attach, replace, or delete data table on existing entity description

"Data->Replace Current Data..." can now be used to add data that has previously only been described. ben leinfelder

10:36 AM Morpho Bug #4366: morpho should display common mime types (e.g., images)

closing this now. if we need more mime types mapped, then we can add them as needed ben leinfelder

10:32 AM Morpho Bug #5037: Internationalize

Also a French bundle included. ben leinfelder

06/03/2010

02:34 PM Morpho Bug #5037: Internationalize

Added Japanese (after much wrangling to get the Unicode as ASCII). Turns out there's a wonderful utility called "nati... ben leinfelder

10:53 AM Morpho Bug #5037: Internationalize

added Spanish and Portuguese bundles now.
Mark is keen on Japanese - suggested contacting Akiko. ben leinfelder

06/02/2010

11:58 AM Morpho Bug #2165: Password appears in log file (stderr.log)

password is now being blacked out (****) when logging ben leinfelder

11:54 AM Morpho Bug #1781: Can�t delete a Data Table that has column headers, but no data

any data entity (dataTable, otherEntity, etc) can now be deleted even if the actual data is not loaded/visible (as is... ben leinfelder

11:50 AM Morpho Bug #1791: need ability to add data types other than dataTable (spatial)

otherEntity import can be used for most data files.
Things like stored procedures or spatial data files would be the... ben leinfelder

11:12 AM Morpho Bug #5037: Internationalize

The changes have been included in Morpho's trunk and a few enhancements have also been made:
-singleton pattern
-load... ben leinfelder

11:11 AM Morpho Bug #5037 (Resolved): Internationalize

Collaborators with Dr. Chau Chin Lin have externalized strings in Morpho and made a Chinese (Taiwan) version of the l... ben leinfelder

05/28/2010

12:50 PM Semtools Bug #4769: Save annotations to network

Now responding to synchronization events fired by Morpho:
1. local -> network: the local annotation[s] are saved to m... ben leinfelder

12:27 PM Semtools Bug #5035: Lost Annotations; discarded Annotation changes

Here's how the plugin works now:
1. Morpho launches - all local annotations are loaded into the manager (to facilitat... ben leinfelder

10:46 AM Semtools Bug #5035 (Resolved): Lost Annotations; discarded Annotation changes

Scenario 1:
1. open an annotated DP
2. edit the an annotation class selection (say, MeasurementStandard)
3. edit a... ben leinfelder

05/27/2010

02:14 PM Kepler Bug #5030: RExpression2 actor will fail if the libs are not found

I've tried to run/install JRI on a 64 bit windows machine.
The JRI examples that they ship seem to work and I can get... ben leinfelder

05/26/2010

03:08 PM Kepler Bug #4985: problem with workflows using Rexpression on Windows XP

i'll try to make 64 bit libs for JRI ben leinfelder

01:51 PM Kepler Bug #4985: problem with workflows using Rexpression on Windows XP

(In reply to comment #1)
1. Derik will change the workflows to point to the DEMODIR path.
2. The RExpression2 (JRI-... ben leinfelder

05/22/2010

05:04 PM Semtools Bug #4769: Save annotations to network

I found an issue where network annotations made by other people were not being loaded. Fixed that.
But i'd like to fi... ben leinfelder

05/20/2010

02:58 PM Semtools Bug #4770: Load Annotations from Metacat in Annotation plugin

Remote (Metacat-stored) annotations are now being loaded in the local (Morpho) AnnotationManager when the EML package... ben leinfelder

02:51 PM Semtools Bug #4769: Save annotations to network

I've set up a test Metacat instance for us to use with the semtools-Morpho installers:
http://fred.msi.ucsb.edu:8080/... ben leinfelder

11:55 AM Kepler Bug #5017: ReportLayout LSID and referral list should be maintained

Hmm, I'm trying to think of how we'd use the "provenance of the report layout". I suppose that could be useful for un... ben leinfelder

11:34 AM Kepler Bug #5017: ReportLayout LSID and referral list should be maintained

are report layouts now NamedObjs or something?
Where is the referral list stored if not? ben leinfelder

11:32 AM Kepler Bug #5019: R_output_example.xml fails

changed the workflow to use different columns (of doubles) for the array plotter input. ben leinfelder

05/19/2010

04:06 PM Semtools Bug #4771: Decide permission policy for Annotations and Ontologies in Metacat

I'm pretty sure I can just pull the access xml from the EML and then call the setAccess() method with that xml fragme... ben leinfelder

03:05 PM Semtools Bug #4769: Save annotations to network

A potential problem I see cropping up is when we have local and network copies of annotations and the IDs differ (eit... ben leinfelder

12:27 PM Semtools Bug #4769: Save annotations to network

Now saving to the same location that the EML data package is using:
LOCAL, METACAT, or BOTH.
If the EML has current ... ben leinfelder

12:09 PM Semtools Bug #4769: Save annotations to network

Resolved a few outstanding issues:
-ID conflict resolution: revision is automatically incremented until conflict does... ben leinfelder

05/14/2010

11:17 AM Morpho Bug #4620: Add handler for externally saving/opening an attached data object

added data menu item:
Data->Export Data...
that is accessible for any entity. ben leinfelder

10:55 AM Morpho Bug #4620: Add handler for externally saving/opening an attached data object

There's now an "Export..." button available when the data cannot be displayed (binary/unknown otherEntity). Text file... ben leinfelder

05/07/2010

02:55 PM Morpho Bug #2492: Morpho Data Table Wizard inserts false URL when describing (not importing) a table

the old URL was just a product of stale values. message is gone now, and there are no references to empty/fake data f... ben leinfelder

02:11 PM Morpho Bug #4366: morpho should display common mime types (e.g., images)

now packaging the mime.type in META-INF/
we can add more as needed. ben leinfelder

11:04 AM Morpho Bug #4366: morpho should display common mime types (e.g., images)

I'm going to see about adding the mime.types file to the morpho-config.jar under the META-INF/ directory as described... ben leinfelder

11:02 AM Morpho Bug #4365: New feature for creating otherEntity

closing - reopen if more issues surround it. ben leinfelder

10:58 AM Morpho Bug #4365: New feature for creating otherEntity

oops - wrong bug
(In reply to comment #6)
> changing the Entity Name to match the Object Name. I actually think I'll ... ben leinfelder

10:57 AM Morpho Bug #4365: New feature for creating otherEntity

changing the Entity Name to match the Object Name. I actually think I'll add at text field so that you can enter a mo... ben leinfelder

10:02 AM Morpho Bug #4365: New feature for creating otherEntity

now works with no existing entities present ben leinfelder

10:58 AM Morpho Bug #3473: allow user to attach, replace, or delete data table on existing entity description

changing the Entity Name to match the Object Name. I actually think I'll add at
text field so that you can enter a mo... ben leinfelder

05/06/2010

03:18 PM Morpho Bug #4366: morpho should display common mime types (e.g., images)

I'll make sure to augment the MIME-type handling to include:
pdf
xls
mdb
png
csv
tab
and any others that are added to... ben leinfelder

02:55 PM Morpho Bug #4365: New feature for creating otherEntity

needs to work in absence of existing data tables/entities ben leinfelder

02:54 PM Morpho Bug #1989: JDK 1.5 Nullpointer exceptions when using HTML viewer (jdk1.5 Bug ID #5089077 ?)

no more Jalama ben leinfelder

11:26 AM Morpho Bug #1989: JDK 1.5 Nullpointer exceptions when using HTML viewer (jdk1.5 Bug ID #5089077 ?)

Are we even using the Jalama plugin? ben leinfelder

02:34 PM Morpho Bug #2492: Morpho Data Table Wizard inserts false URL when describing (not importing) a table

Using v1.8.0 I found that an ecogrid//... url was not generated for a Described table. This indicates that the primar... ben leinfelder

02:00 PM Morpho Bug #2287: Saving local dp to the network creates dp with different docid

Cannot reproduce with v1.8.0. Steps:
-Duplicate jscientist package
-Remove data table
-Import new sample data table
-... ben leinfelder

01:49 PM Morpho Bug #3549: measurementType dateTime is not displayed for a time column

oh - it's when the sample data column appears in the left of the wizard frame. ben leinfelder

01:47 PM Morpho Bug #3549: measurementType dateTime is not displayed for a time column

It looks like the wizard page for this sometimes get rendered such that not all the options are displayed. You can re... ben leinfelder

01:22 PM Morpho Bug #2529: Add Morpho Version/Date info to KNB website

oh, I suppose the "Quick Downloads" section does not show the date, but the links do show the version number (embedde... ben leinfelder

01:17 PM Morpho Bug #2529: Add Morpho Version/Date info to KNB website

on the KNB page:
Morpho version 1.8.0 released on February 8, 2010. For more information, please see the Morpho Soft... ben leinfelder

01:15 PM Morpho Bug #2851: Templating support for attribute entries

Proposed implementation:
"Data->Duplicate Current Table..."
Will add another entity to the data package with all the ... ben leinfelder

12:13 PM Morpho Bug #4461: delete local copy only deletes the most recent stored revision, but this is not indicated

Referenced data is not deleted either. Which is probably a good thing given that the data can be referenced by previo... ben leinfelder

12:11 PM Morpho Bug #4418: "about" box displays incorrect version number

We do this in Kepler - could probably make those changes to Morpho as well. ben leinfelder

12:04 PM Morpho Bug #3760: "Edit" button defaults to tree editor

this edit button has been removed ben leinfelder

11:41 AM Morpho Bug #1426: closing unsaved package does not close package

still happening in 1.8.0 ben leinfelder

11:33 AM Morpho Bug #1198: Increase visibility & Descriptiveness of "more..." link under morpho citation title/header

it's:
a) blue
b) bold
c) underlined
How much more visible could it be?
There's also a tool tip that says: "Show more/... ben leinfelder