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From 06/03/2007 to 07/02/2007

07/03/2007

09:39 PM Bug #2665: Ready for DBA process: Project 75 (Singletary Lake, NC): 52 plots
STATUS UPDATE for Project 75.
Bob indicated that comment 8 should be resolved by deleting the Zenobia that was sampl...
Michael Lee
05:45 PM Bug #2661: comments in XLS resolve: Project 63 (Francis Marion NF): 54 plots
Plot 63-2-932 has only 5 records populated with strata (out of 48 species). We might consider removing this scant an... Michael Lee
05:23 PM Bug #2661: comments in XLS resolve: Project 63 (Francis Marion NF): 54 plots
63-4-933 has fit of "1" when assigning to CEGL3525. Is this excellent or poor fit? I think by context it must be po... Michael Lee
05:10 PM Bug #2661: comments in XLS resolve: Project 63 (Francis Marion NF): 54 plots
063-04-0925 was originally classified as CEGL004646: Nyssa aquatica - Nyssa biflora Saturated Forest, but this value ... Michael Lee

07/02/2007

04:51 PM Bug #2661: comments in XLS resolve: Project 63 (Francis Marion NF): 54 plots
fixed new species that were in the database. Michael Lee
04:28 PM Bug #2661: comments in XLS resolve: Project 63 (Francis Marion NF): 54 plots
above excel file can be found here:
\\bioark\peetlab\cvs
Michael Lee
03:16 PM Bug #2666: ready for DBA: Project 76 (Elizabeth City, NC): 52 plots
Data errors have been resolved. Moving on to DBA process and Spp check. Michael Lee
03:03 PM Bug #2665: Ready for DBA process: Project 75 (Singletary Lake, NC): 52 plots
8-1001 has many cases of Smilax rotundifolia. One record shows 340 stems in the R module, but there are other rows i... Michael Lee
01:37 PM Bug #2665: Ready for DBA process: Project 75 (Singletary Lake, NC): 52 plots
For every ecologist there is an equal and opposite methodology:
On plot 75-1-1005, the stems have a note:
"Zenobia h...
Michael Lee
12:54 PM Bug #2665: Ready for DBA process: Project 75 (Singletary Lake, NC): 52 plots
There are a lot of plots that have more strata available and filled in on the datasheets than the data entry tool exp... Michael Lee
01:14 PM Bug #2881 (Resolved): Error checking flagged "[muliple]" as bad value.
When users select more than one value, the list fills in [multiple] as the value. We need to allow this and ignore t... Michael Lee

06/28/2007

12:29 PM Bug #2665: Ready for DBA process: Project 75 (Singletary Lake, NC): 52 plots
75-1-1005 differentiates between Woodwardia virginica (live) and Woodwardia virginia (dead).
Cover values are 9's an...
Michael Lee
11:59 AM Bug #2665: Ready for DBA process: Project 75 (Singletary Lake, NC): 52 plots
There are actually 52 plots, not 53. Michael Lee
11:53 AM Bug #2665: Ready for DBA process: Project 75 (Singletary Lake, NC): 52 plots
Fixed the above Nyssa stems that were smaller than 40cm in the biglist. Put them in the 35-40 tally. Michael Lee
11:45 AM Bug #2664: 5 errs remain: Project 74 (Cape Fear Riparian): 62 plots
I have resolved the errors here (ignoring for the moment the duplicates), except for the species with no info. Those... Michael Lee

06/25/2007

08:48 AM Bug #2665: Ready for DBA process: Project 75 (Singletary Lake, NC): 52 plots

> > Details:
> > 075-02-1001, Nyssa biflora in R has 2 stems (36, 38) that are <40 cm DBH but
> > are written into t...
Michael Lee
06:20 AM Bug #2665: Ready for DBA process: Project 75 (Singletary Lake, NC): 52 plots
(In reply to comment #1)
> Project 75 is squeaky clean!
>
> The only minor issue is 2 stems that are smaller than 40...
Forbes Boyle
08:45 AM Bug #2666: ready for DBA: Project 76 (Elizabeth City, NC): 52 plots
(In reply to comment #2)
> (In reply to comment #1)
> > imported into new data entry tool version 2.1.0
> >
> > igno...
Michael Lee
07:12 AM Bug #2666: ready for DBA: Project 76 (Elizabeth City, NC): 52 plots
(In reply to comment #1)
> imported into new data entry tool version 2.1.0
>
> ignored 2 errors about height range a...
Forbes Boyle
06:13 AM Bug #2664: 5 errs remain: Project 74 (Cape Fear Riparian): 62 plots
(In reply to comment #2)
> A) 59 plots had no taxonomic reference filled in. 3 plots did (all 3 had
> Weakley Jan 1,...
Forbes Boyle
06:04 AM Bug #2664: 5 errs remain: Project 74 (Cape Fear Riparian): 62 plots
(In reply to comment #2)
> A) 59 plots had no taxonomic reference filled in. 3 plots did (all 3 had
> Weakley Jan 1,...
Forbes Boyle

06/23/2007

07:55 PM Bug #2837: Deep links to maps
I added a paragraph to introduce this new function. Please check the test website at: http://herbarium.unc.edu/seflor... xianhua liu

06/22/2007

04:43 PM Bug #2664: 5 errs remain: Project 74 (Cape Fear Riparian): 62 plots
There are 32 duplicate species on plots and 2238 duplicate stems, mostly in the R module. Looks like they didn't lum... Michael Lee
03:43 PM Bug #2663: 2 errs left: + duplicates flagged: Project 73 (Mountain Bogs): 64 plots
33 species duplicated on plots and 4 stems duplicated within a module. Michael Lee
02:45 PM Bug #2663: 2 errs left: + duplicates flagged: Project 73 (Mountain Bogs): 64 plots
Plot 9-53 does not exist, apparently. Michael Lee
02:42 PM Bug #2663: 2 errs left: + duplicates flagged: Project 73 (Mountain Bogs): 64 plots
There are 64 plots, not 65. Michael Lee
12:27 PM Bug #2663: 2 errs left: + duplicates flagged: Project 73 (Mountain Bogs): 64 plots
adding forbes and bob to cc.
Only things left on this project is to check a few plots for plot-level subsampling (...
Michael Lee
12:23 PM Bug #2661: comments in XLS resolve: Project 63 (Francis Marion NF): 54 plots
19 errors initially.

ignoring 9 errors of no species on stem entry form - plots had no trees
ignoring 3 errors of ...
Michael Lee
11:12 AM Bug #2666: ready for DBA: Project 76 (Elizabeth City, NC): 52 plots
imported into new data entry tool version 2.1.0
ignored 2 errors about height range and total cover missing for stra...
Michael Lee

06/21/2007

04:33 PM Bug #2665: Ready for DBA process: Project 75 (Singletary Lake, NC): 52 plots
Project 75 is squeaky clean!
The only minor issue is 2 stems that are smaller than 40cm DBH that are listed individu...
Michael Lee
03:37 PM Bug #2664: 5 errs remain: Project 74 (Cape Fear Riparian): 62 plots
A) 59 plots had no taxonomic reference filled in. 3 plots did (all 3 had Weakley Jan 1, 2006). Add Weakly '06 for a... Michael Lee
02:24 PM Bug #2664: 5 errs remain: Project 74 (Cape Fear Riparian): 62 plots
imported into version 2.1.0 database, grabbing custom Lat/Long fields into realLat and realLong Michael Lee
12:16 PM Bug #2662: Unfolding: Project 64 (Brunswick Co. NC): 88 plots
Lots of duplicates, unfortunately. 20 in herbs and 33 lines in trees, the most offensive plot being 4-972, which loo... Michael Lee
12:05 PM Bug #2662: Unfolding: Project 64 (Brunswick Co. NC): 88 plots
Additional problems:
plot 064-09-0960 has no communities linked into it, but two classification attempts, it would ...
Michael Lee
11:14 AM Bug #2662: Unfolding: Project 64 (Brunswick Co. NC): 88 plots
cleaned up new species added a bit. Some fields weren't used well, other species were added as duplicates. Michael Lee
10:59 AM Bug #2662: Unfolding: Project 64 (Brunswick Co. NC): 88 plots
Now everything is resolved for project 64. Excel spreadsheets also updated on Bioark\Peetlab\CVS Michael Lee
09:48 AM Bug #2662: Unfolding: Project 64 (Brunswick Co. NC): 88 plots
(In reply to comment #4)
> Now just 2 issues left:
>
> a) whether or not to make up stratum definitions where lacki...
Forbes Boyle
08:00 AM Bug #2662: Unfolding: Project 64 (Brunswick Co. NC): 88 plots
Now just 2 issues left:
a) whether or not to make up stratum definitions where lacking (2 plots). MTL leans toward...
Michael Lee
11:52 AM Bug #2879 (New): Need a zoom in on community classification from plot data form
This portion of the form rapidly becomes too small. Need a pop-up form that shows the same info, but with more space. Michael Lee
11:23 AM Bug #2663: 2 errs left: + duplicates flagged: Project 73 (Mountain Bogs): 64 plots
and possibly these should be checked:
9-16, 9-39, 9-55, 9-56, 9-62, 9-65 all lack plot-subsapling and plot-subtree
v...
Michael Lee
08:04 AM Bug #2663: 2 errs left: + duplicates flagged: Project 73 (Mountain Bogs): 64 plots
last bit of the last comment should read:
remaining errors:
073-09-0017 has no info about >>a row on the stem form...
Michael Lee
05:45 PM Bug #2663: 2 errs left: + duplicates flagged: Project 73 (Mountain Bogs): 64 plots
There is a readme file on Bioark in the folder for this project that says this:
18 are because of plots that have no...
Michael Lee
05:38 PM Bug #2663: 2 errs left: + duplicates flagged: Project 73 (Mountain Bogs): 64 plots
Species issues on this project, as new species were added for "sp." issues: Sphagnum, Rubus Michael Lee
05:17 PM Bug #2663: 2 errs left: + duplicates flagged: Project 73 (Mountain Bogs): 64 plots
imported original entry tool to a version 2.1.0 entry tool.
preformed error checking: 141 errors (ouch!)
Michael Lee
09:31 AM Bug #2878 (Resolved): Check and standardize fit across all projects
It may be possible that some projects have 1=best fit whereas others have 5=best fit. Need to check this (how?) and ... Michael Lee
07:00 PM Bug #2837: Deep links to maps
Great. Now we just need to document this functionality on the 'About' page. Robert Peet
06:57 PM Bug #2842: Incorrect mapping of nominal concepts
Your proposed rule seems appropriate. At a minimum we check to see whether there is an equal-rank but different (and... Robert Peet
05:07 PM Bug #2877 (Resolved): Access 2007 issues
This bug is a tracking bug for Access 2007 issues in the entry tool and access in general.
1) seems to ask twice i...
Michael Lee

06/20/2007

04:54 PM Bug #2662: Unfolding: Project 64 (Brunswick Co. NC): 88 plots
of the 43 errors, only 8 are not dealing with a plot that has no trees. The database flags these as errors, but like... Michael Lee
04:40 PM Bug #2662: Unfolding: Project 64 (Brunswick Co. NC): 88 plots
I resolved 3 errors associated with species list and "sp." in the "unknown sp." line. 8 errors are due to plot lacki... Michael Lee
04:27 PM Bug #2662: Unfolding: Project 64 (Brunswick Co. NC): 88 plots
Imported into version 2.1.0 of the entry tool.
56 errors found in the new entry tool with this data.
Michael Lee
04:32 PM Bug #2876 (Resolved): Error checker thinks that non-vascular genera shouldn't have "sp."
But that's fine, generally. One could look at whether or not there was something in the species field of the carSpLi... Michael Lee
04:12 PM Bug #2661: comments in XLS resolve: Project 63 (Francis Marion NF): 54 plots
Data have been imported into entry db version 2.1.0 Michael Lee
04:11 PM Bug #2661: comments in XLS resolve: Project 63 (Francis Marion NF): 54 plots
Forbes and Michael looked through this data on June 7, 2007 and determined that there were still errors awaiting fixing. Michael Lee
03:14 PM Bug #2871: stem mapping improvements needed
Forgot to resolve this bug just a moment ago. Michael Lee
03:14 PM Bug #2871: stem mapping improvements needed
finished these upgrade and tested them with messy data and the maps were very legible and helpful. Michael Lee
03:12 PM Bug #2723: Add "weird" taxa to new CVS Entry and Archive databases
Done. Backedup to my local machine until FTP access to UNC is restored. Michael Lee
11:56 AM Bug #2723: Add "weird" taxa to new CVS Entry and Archive databases
added to archive, now v101
added to entry v211p36.
todo: backup to UNC
Michael Lee
11:08 AM Bug #2856: Make sure the sub-sapling only applies to saplings at level 2-3, not trees
This is not a problem. Michael Lee
10:56 AM Bug #2875: Windows cannot find "fileName" for entryDB
This may be a Windows Vista issue. Thus far, it only occurs if I double click on the icon to open the file. If I ope... Michael Lee
10:17 AM Bug #2875: Windows cannot find "fileName" for entryDB
Doesn't appear when compacting and repairing then starting back up. Michael Lee
10:15 AM Bug #2875 (Resolved): Windows cannot find "fileName" for entryDB
This is an odd error that seems to be related to the starting up mechanism of the entry tool. Michael Lee
06:24 PM Bug #2874: Taxon Search drop down list - keyboard navigation problematic
Fixed. It was fine in IE but not in Mozila. Now it should be OK in both. xianhua liu

06/19/2007

03:09 PM Bug #2874 (Closed): Taxon Search drop down list - keyboard navigation problematic
The drop down list that appears as you type into the taxon search box is only navigable with the mouse. When you pre... Robert Peet

06/17/2007

12:13 PM Bug #2810: Print function for maps does not work
Added notes beside the print icon as '(To print, popups should be allowed from seflora website)'.
xianhua liu
11:56 AM Bug #2837: Deep links to maps
Sorry, the current links created automatically by the email server are broken at the space in the species names. Plea... xianhua liu
11:51 AM Bug #2842: Incorrect mapping of nominal concepts
The issue is that the Weakley concepts are not considered when we infer the relationships to nominal concepts. Go bac... xianhua liu
11:21 AM Bug #2843: Only final collector listed for specimens
Java querying classes are changed to retrieve all the collectors ordered by the orders of the collectors. See Quercus... xianhua liu

06/14/2007

12:23 PM Bug #2871: stem mapping improvements needed
Done, but could use a test with real data:
1) If stems have the same X,Y they should have the same letter on the map,...
Michael Lee
09:09 AM Bug #2871: stem mapping improvements needed
comment #2 is done:
Also, it would be helpful to display stemCodeID on the form for resampling (not
TreeLineID, but t...
Michael Lee
08:33 AM Bug #2871: stem mapping improvements needed
FIXED: 2) the borders of the plot overlap the letters on stems, making it hard to
read. Should be reversed.
v211p2
Michael Lee
08:29 AM Bug #2871: stem mapping improvements needed
Comment #1 resolved (211p2) Michael Lee
07:58 AM Bug #2720: Reorganize the Advanced Options Form into tabs?
Not sure when or even if this is needed. Michael Lee
07:19 AM Bug #2859: Rebar should be capped if used.
added to version 4.1.1 Michael Lee
06:54 AM Bug #2867: Reverse Migrate New archive data into old archive
depends on other bugs, so I am marking this as "new" not "assigned" (aka
something I am working on now)
Michael Lee
06:54 AM Bug #2869: Migrate OLD ARCHIVE to the NEW ARCHIVE
depends on other bugs, so I am marking this as "new" not "assigned" (aka something I am working on now) Michael Lee

06/11/2007

11:27 AM Bug #2871: stem mapping improvements needed
Also, it would be helpful to display stemCodeID on the form for resampling (not TreeLineID, but the ID of the stem, w... Michael Lee
10:48 AM Bug #2871: stem mapping improvements needed
Need to retain original order of stems: copy over newOrder? Need to then reflect this in the report (but not display... Michael Lee
09:52 AM Bug #2871 (Resolved): stem mapping improvements needed
There are some improvements needed to the stem mapping interface for VMD:
1) If stems have the same X,Y they shoul...
Michael Lee

06/07/2007

11:46 AM Bug #2869 (Resolved): Migrate OLD ARCHIVE to the NEW ARCHIVE
Need taxonomy upgrade and some fields will be problematic because they have no home in the new archive (e.g. groundCo... Michael Lee
11:44 AM Bug #2868 (In Progress): upgrade taxonomy using TaxonOccurence Spreadsheet (aka Cover_ver4_withCBS)
Could be Weakley 06 or 07. Michael Lee
11:42 AM Bug #2867 (Resolved): Reverse Migrate New archive data into old archive
The New Archive data that will be compiled into one db needs to be migrated into the old archive so that we can use i... Michael Lee
11:38 AM Bug #2866 (Resolved): Migrate data from OLD entry db to OLD archive (w/ SAS) (52,59,61)
This includes projects 52,59,61.
OLD entry db -> SAS -> old entry db -> old archive db
Michael Lee
 

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