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From 01/20/2009 to 02/18/2009

02/18/2009

04:56 PM Bug #3823: "make" dependency causes build to fail on windows: Does this also prevent installation of the various CGI files that might depend on that make successfully completing? Matt Jones
04:53 PM Bug #3823: "make" dependency causes build to fail on windows: Added a property to build.properties called make.perl.code. Setting this to false will block the cgi make from runni... Michael Daigle
04:49 PM Revision 4813 (metacat): add a build property "make.perl.code" so the cgi make can be turned off in build.xml on machines without make.: daigle
04:37 PM Bug #3826: Remove jdbc properties from build.properties if not needed: Removed database properties from build.properties. Michael Daigle
04:36 PM Bug #3825: indexPaths should be more readable in build.properties: Changed the indexPaths property to be multi-line and alphabetized. Had to modify SortedProperties to read multi-line... Michael Daigle
04:35 PM Bug #3830 (New): Add the ability to modify multi-line properties: Right now, SortedProperties will read a multi-line property, but not modify one. It should be able to modify a multi... Michael Daigle
04:30 PM Revision 4812 (metacat): Format indexPaths in metacat.properties. Remove from build.properties and build.xml. Move indexPath list getter from MetacatUtil to SystemUtil.: daigle
11:31 AM Bug #3777: Move Tomcat libraries into metacat build: Review comments on ticket 3824 Michael Daigle
11:19 AM Bug #3777: Move Tomcat libraries into metacat build: We used to include those libs back in the Tomcat 3 days, but took them out as
the servlet library jars changed in Tom... Matt Jones
11:30 AM Bug #3824: Normalize the app deploy dir in build.properties: Yeah, makes sense. Unfortunately, there is another domain specific issue (to be solved) which is that the knb websit... Michael Daigle
11:19 AM Bug #3824: Normalize the app deploy dir in build.properties: We used to include those libs back in the Tomcat 3 days, but took them out as
the servlet library jars changed in Tom... Matt Jones
11:12 AM Bug #3824: Normalize the app deploy dir in build.properties: Referencing ticket 3777 which moves tomcat libs into metacat project and eliminates build.tomcat.dir from build.prope... Michael Daigle
11:09 AM Bug #3824: Normalize the app deploy dir in build.properties: My response:
The problem with 3 A is that the build.tomcat.dir is not necessarily the same as the app.deploy.dir. O... Michael Daigle

02/17/2009

04:32 PM Bug #3826 (Resolved): Remove jdbc properties from build.properties if not needed: Per Duane Costa:
In build.properties:
The 'database' property and all the 'jdbc' properties
are still in t... Michael Daigle
04:29 PM Bug #3825 (Resolved): indexPaths should be more readable in build.properties: Per Duane Costa:
In build.properties:
'indexPaths' is an important property, but its value is
very difficult... Michael Daigle
04:27 PM Bug #3824 (Resolved): Normalize the app deploy dir in build.properties: Per Duane Costa:
in build.properties file:
app.deploy.dir=/usr/local/devtools/jakarta-tomcat/webapps
It wo... Michael Daigle
04:26 PM Bug #3823 (Resolved): "make" dependency causes build to fail on windows: Per duane costa:
There's a platform dependency on 'make' which is a blocker for building the source distribution o... Michael Daigle
04:24 PM Bug #3822 (Resolved): Spatial part of advanced search doesn't work: Per Duane Costa:
I tested a number of searches in the 'default' skin and almost everything ran fine. However, the... Michael Daigle
04:01 PM Revision 4811 (metacat): Replace System.out.println statements with logMetacat statements.: daigle
02:45 PM Revision 4810 (metacat): moved file from metacat/bin to metacat/src/scripts/bash since eclipse uses <project>/bin as a default build directory and these files will consistently get blown away locally by eclipse.: daigle
02:22 PM Revision 4809 (metacat): Replace System.out.println statements with logMetacat statements.: daigle
09:37 AM Bug #3819: Error writing to replication log: Fixed Michael Daigle
09:36 AM Bug #3819 (Resolved): Error writing to replication log: If the replication log directory does not exist, the replication code throws warnings. Changed the PropertyAdmin to ... Michael Daigle
09:32 AM Revision 4808 (metacat): Update replication documentation and fix code so that replication log is available.: daigle
09:30 AM Revision 4807 (metacat): Add troubleshooting instructions for map issues with firefox 3 and safari: daigle
09:29 AM Revision 4806 (metacat): remove semicolon at the end of xml.useFullSchemaValidation property.: daigle
09:28 AM Revision 4805 (metacat): Separate the concept of a backup file location and a metacat external directory location. These can be totally different.: daigle

02/12/2009

02:12 PM Bug #3818: Maps don't load for mac and windows: Windows needed to be rebooted to work.
The mac issues were known issues. Mapbuilder will not work right against f... Michael Daigle
11:41 AM Bug #3818: Maps don't load for mac and windows: Seeing this in Safari on mac as well Michael Daigle
11:14 AM Bug #3818 (Resolved): Maps don't load for mac and windows: Maps are not loading on mac running firefox 3.0.1 and Win XP running firefox 3.0.6 (those were all we tested so far).... Michael Daigle
09:06 AM Bug #3817: Documents with DTD declarations cannot be inserted: Fixed the DTD registration in the xml_catalog table.
Now just warning about pre-existing DTDs when [re]fetching from ... ben leinfelder
09:02 AM Bug #3817 (Resolved): Documents with DTD declarations cannot be inserted: Background:
Working with Choonhan Youn at SDSC (cyoun@sdsc.edu): they are developing a skin that makes use of the FG... ben leinfelder

02/11/2009

05:40 PM Revision 4803 (metacat): Fixes include:: -Overwriting existing DTDs on the filesystem if they exist and registration in the DB failed
-only registering a DTD ... ben leinfelder
02:52 PM Revision 4802 (metacat): Fix formatting for ecogrid testing section: daigle
02:33 PM Revision 4801 (metacat): Add instructions for how to test the web registry, web ldap, and ecogrid registry service.: daigle
10:36 AM Bug #3814: Backed up directories are not getting read during configuration: fixed on bug 3813 Michael Daigle
10:36 AM Bug #3813: Local save of backup location is not being written: Made sure a local file was written to the user's home directory. The file is at <user_home>/.<application_context> Michael Daigle

02/10/2009

05:25 PM Revision 4800 (metacat): do not include the column name when inserting into an auto-increment column: ben leinfelder
04:50 PM Revision 4799 (metacat): Make sure and write the shortcut to the backup directory to a directory in the users home.: daigle
01:05 PM Bug #3815: Ampersand character not correctly encoded: Register-dataset.cgi may not have any testing itself, but it is based on Metacat.pm which does have a test suite in t... Matt Jones
12:33 PM Bug #3815: Ampersand character not correctly encoded: To properly fix this bug, we'll need to add tests for character conversions, to make sure that we aren't introducing ... Shaun Walbridge
12:36 PM Bug #3816: Export action doesn't create complete package: Add an explicit test for this action, by uploading a new document with associated files, then downloading the resulti... Shaun Walbridge
11:45 AM Bug #3812: Registry service will fail when registering new services: Updated the MetacatImpl.xml build file in seek to include the ecogrid registry service xml schema files. Added the s... Michael Daigle
08:59 AM Revision 4798 (metacat): Prepend the web application name to the log message.: daigle

02/09/2009

06:02 PM Bug #3816 (Closed): Export action doesn't create complete package: When using the export action, two bugs are noticeable:
1. Documents with associated data tables have files with t... Shaun Walbridge
05:35 PM Bug #3815 (Resolved): Ampersand character not correctly encoded: Ampersands are encoded as "&" within register-dataset.cgi in normalize(), but documents uploaded have a "%26amp;"... Shaun Walbridge
05:16 PM Bug #3814 (Resolved): Backed up directories are not getting read during configuration: Once metacat is configured after the initial installation, the configured values should be saved. The global propert... Michael Daigle
05:05 PM Bug #3813 (Resolved): Local save of backup location is not being written: If the tomcat user has a home directory, a file should get written to it in ~/.metacat/<application>_backup_location.... Michael Daigle
03:01 PM Revision 4797 (metacat): Add the service registration xml schema to the database. The ecogrid build will add the schema files to the application (see seek): daigle

02/07/2009

03:17 PM Bug #3811: Spatial caches should be backed up and restored: Matt Perry and I discussed having them be located outside of the knb context dir many times. We both agreed it was a... Matt Jones

02/06/2009

03:07 PM Bug #3812 (Resolved): Registry service will fail when registering new services: The xml used to register a new registry service will fail because the schema location does not exist and we validate ... Michael Daigle
01:50 PM Bug #3811 (Resolved): Spatial caches should be backed up and restored: Right now it takes over 40 minutes for the spacial caches to be generated every time metacat is upgraded on knb. The... Michael Daigle
01:46 PM Bug #3806: Multiple instances of metacat will try to back up configuration to the same directory: Changed the configuration to back up properties to a subdirectory named for the context. Michael Daigle
11:45 AM Revision 4796 (metacat): use "prompt" xpath that matches current QTI serialization: ben leinfelder

02/03/2009

04:01 PM Revision 4795 (metacat): Allow for backup properties to be written to context based subdirectory of the external configuration directory. This allow multiple instances of metacat to be run side by side.: daigle
03:58 PM Revision 4794 (metacat): Moved ecogrid hostname to build.properties: daigle

02/02/2009

03:12 PM Bug #3806 (Resolved): Multiple instances of metacat will try to back up configuration to the same directory: When metacat autodiscovers the backup directories, it will find the same directory for multiple instances of metacat ... Michael Daigle

01/22/2009

03:25 PM Bug #3772 (Resolved): Error when trying to reset ldap password: When trying to reset the password in the nceas skin, the following is returned:
"failed to log in. Are you sure y... Michael Daigle
03:05 PM Bug #3762: Allow LDAPweb to continue working when referrals are down: Simple fix applied in r4771. Shaun Walbridge
03:04 PM Revision 4771 (metacat): Handle non-responsive LDAP referrals without killing the script, but still require the main LDAP to be up.: walbridge
02:40 PM Bug #3767: Links on the ldap-web account creation page are broken: Added cgiPrefix to the available template variables in ldapweb.cgi. Michael Daigle
11:41 AM Bug #3767 (Resolved): Links on the ldap-web account creation page are broken: The page that has the ldap new account creation form has links at the top to Register and Logout. These links are mi... Michael Daigle
02:39 PM Revision 4770 (metacat): Add cgiPrefix to the template variables.: daigle
10:36 AM Bug #3765: Backup configured passwords as encrypted values: Along these lines of reasoning, security practices dictate never storing the plaintext password at all. Perhaps once... Shaun Walbridge
10:11 AM Bug #3765 (New): Backup configured passwords as encrypted values: Currently, the user has to add the passwords for the db, skins and metacat ldap web every time they upgrade. This sh... Michael Daigle

01/21/2009

04:30 PM Bug #3763: another permissions error when registering dataset in nceas skin: Metacat was checking for xml_access when uploading a new data file. Changed so that it only checks for existing data... Michael Daigle
11:37 AM Bug #3763 (Resolved): another permissions error when registering dataset in nceas skin: When registering a dataset with a data file, Metacat is throwing the following exception:
MC 14:29:17,633: [ERROR]... Michael Daigle
04:28 PM Revision 4769 (metacat): Don't worry about checking for user permissions when inserting a new document: daigle
12:03 PM Bug #3762: Allow LDAPweb to continue working when referrals are down: This is already done in register-dataset.cgi so that broken referrals are skipped, so you can probably model the code... Matt Jones
11:32 AM Bug #3762 (Resolved): Allow LDAPweb to continue working when referrals are down: Currently, the LDAPweb script iterates over each referrer when checking for existing names. If one of these fails to... Shaun Walbridge
11:16 AM Bug #3384: Implement and test turnkey installation on windows: this has been implemented and tested Michael Daigle
11:15 AM Bug #3761 (Closed): Add ability for admin user to log out: Currently in the configuration utility, the admin user can only log in as a new user. Should also have the ability t... Michael Daigle
09:31 AM Revision 4768 (metacat): add instruction to install scalar::util for registry: daigle

01/20/2009

12:26 PM Revision 4767 (metacat): Add a few more debugging messages to LDAPweb to help find timeout issues: walbridge
12:20 PM Bug #3757: Error when creating ldap account via nceas skin on dev: Fixed by installing Scalar::Util with cpan:
cpan
> force install Scalar::Util
A redhat specific issue, explained in... Shaun Walbridge
11:34 AM Bug #3757 (Resolved): Error when creating ldap account via nceas skin on dev: When submitting a new ldap account on dev in the nceas skin, a blank screen is returned.
The following errors show... Michael Daigle
12:16 PM Bug #3758: Permissions error when registering dataset in nceas skin: Temporary directory wasn't writable by apache on dev. Updated to enable file writing, should now work as expected. Shaun Walbridge
12:07 PM Bug #3758 (Resolved): Permissions error when registering dataset in nceas skin: Registering a dataset with all fields filled in and an attached data doc comes back with a blank screen. The apache ... Michael Daigle
12:03 PM Bug #3756: Passwords should not persist to backup files: Added code to check if field is a password. If so, don't back it up. Michael Daigle
10:09 AM Revision 4766 (metacat): Do not back up password properties: daigle
10:05 AM Revision 4765 (metacat): change the eml tag to RC4 instead of head.: daigle

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