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From 02/11/2009 to 03/12/2009

03/12/2009

04:40 PM Bug #3886 (Resolved): Metacat perfomance analysis
Metacat is using a lot of memory on production and seems to use many db connections. We should monitor and determine... Michael Daigle
10:46 AM Bug #3885 (Resolved): KNB metacat replication error log file is empty
In the new 1.9.0 knb metacat, it seems the replication log files' name are changed. Somehow the error log file is emp... Jing Tao
10:40 AM Bug #3881: Replication not working between KNB and LTER metacats
Got email from Duane and the replication seemed working. Jing Tao
06:07 PM Bug #3881: Replication not working between KNB and LTER metacats
After getting the new certificate issued for metacat.lternet.edu and change the server to metacat.lternet.edu:8443/kn... Jing Tao
05:50 PM Revision 4838 (metacat): made a couple corrections.
kanderson
05:26 PM Revision 4837 (metacat): Very rough draft of Metacat Admin guide outline
kanderson

03/11/2009

01:22 PM Bug #3884: Perl modules missing from 1.9.0 install
Completed the perl install instructions for 1.9.0 which included the Config::Properties module.
Works now.
Michael Daigle
01:21 PM Bug #3884 (Resolved): Perl modules missing from 1.9.0 install
Per Matt
Go to NCEAS skin (http://knb.ecoinformatics.org/knb/style/skins/nceas/)
then search for 'soil' which ...
Michael Daigle
01:21 PM Bug #3881: Replication not working between KNB and LTER metacats
LTER changed the host name of metacat. But the certificate and the host name in knb xml_replication has not been upda... Jing Tao
01:13 PM Bug #3881 (Resolved): Replication not working between KNB and LTER metacats
After the 1.9.0 upgrade on knb and lter, docs are not replicating from knb to lter. Jing is working with Duane C to ... Michael Daigle
01:19 PM Bug #3883 (Resolved): OBFS skins still using ant tokens
After the 1.9.0 Metacat release, Matt wrote:
Go to http://knb.ecoinformatics.org/knb/style/skins/obfs/
Search...
Michael Daigle
01:18 PM Bug #3882: KNB Web links don't work correctly
This was found after the 1.9.0 metacat release to KNB. Michael Daigle
01:17 PM Bug #3882 (Resolved): KNB Web links don't work correctly
There are several issues with links and hardcoded paths in knbweb. These have been reproduced in a dev environment.
...
Michael Daigle

03/10/2009

01:55 PM Revision 4836 (metacat): Draft of Metacat overview for scientists.
kanderson
01:52 PM Revision 4835 (metacat): Added draft of Metacat overview for scientists.
kanderson

03/06/2009

03:33 PM Revision 4833 (metacat): Use the EML_UTIL_0_9_0 tag
daigle

03/05/2009

01:39 PM Revision 4832 (metacat): Added jing's suggested changes
daigle
01:29 PM Revision 4831 (metacat): include NSF grant number
ben leinfelder
11:26 AM Revision 4830 (metacat): Add documentation for query caching and indexing mechanisms.
daigle
04:18 PM Revision 4829 (metacat): found more method that should be plural
Margaret O'Brien

03/04/2009

02:08 PM Revision 4828 (metacat): removed duplicate variable settings
Margaret O'Brien
02:00 PM Revision 4827 (metacat): fixed path for sibling access
Margaret O'Brien
10:19 AM Revision 4826 (metacat): 1. changed path for doc-level access to sibling instead of child
2. renamed template "datasetaccess" to datatableaccess and changed path to distribution/access Margaret O'Brien
10:02 AM Revision 4825 (metacat): updated templates to reflect new spelling of dateTime and methods in attributes.
Margaret O'Brien
09:31 AM Revision 4824 (metacat): Added eml 2.1.0 stylesheets for sbclter.
daigle

03/03/2009

09:59 AM Bug #3853: Make sure the sbclter and pisco skins work with token replacement
Email I sent to metacat developers:
I had to make a few changes to the way the sbclter skin works, mostly because th...
Michael Daigle
09:38 AM Revision 4823 (metacat): Create an eml 2.1.0 shared directory. Move skin specific xsl directives into sbclter directory: sbclter-eml-2.0.0.xsl and sbclter-eml-2.1.0.xsl
daigle

03/02/2009

11:08 AM Bug #3848: Update metacat to use new EML tags
Updated build.xml to use:
schema: RELEASE_EML_2_1_0
style: RELEASE_EML_UTILS_1_0_0_RC1
Had margaret add eml/defaul...
Michael Daigle
11:05 AM Revision 4822 (metacat): Add step to install Digest::SHA1
daigle
11:04 AM Revision 4821 (metacat): Update EML 2.1.0 schema and style (util) tags. These tags now only cover the files relative to each.
daigle
09:51 AM Bug #3853 (Resolved): Make sure the sbclter and pisco skins work with token replacement
Work with Margaret to knock out the remaining display issues on the sbclter skin. Michael Daigle
09:49 AM Bug #3849: Some perl make files are not included in metacat war install
Included autosplit.ix in the metacat distribution and added instructions for deploying that file on the server. Michael Daigle

02/27/2009

12:05 PM Revision 4820 (metacat): Clean perl code before building.
daigle
10:42 AM Revision 4819 (metacat): distribute perl autosplit.ix file with metacat. change tomcat startup script output to echos.
daigle
10:40 AM Revision 4818 (metacat): Add db rollback scripts
daigle
10:39 AM Revision 4817 (metacat): Add apache download instructions
daigle

02/26/2009

03:15 PM Bug #3849 (Resolved): Some perl make files are not included in metacat war install
The old perl "make install" would create a file named /usr/local/share/perl/5.8.8/auto/Metacat/autosplit.ix ...
T...
Michael Daigle
02:53 PM Bug #3848 (Resolved): Update metacat to use new EML tags
The separate tags for EML schema and styles work a little differently than before. Only the affected directories are... Michael Daigle

02/24/2009

06:06 PM Bug #3835 (In Progress): design and implement OAI-PMH compliant harvest subsystem
Metacat's current harvest mechanism works well but is a proprietary system. The Dryad project has proposed to implem... Matt Jones
05:33 PM Bug #3816: Export action doesn't create complete package
Mike,
This Metacat export bug is 1) a regression from prior behavior, and 2) sorely needs fixing for the NCEAS colla...
Matt Jones

02/23/2009

11:29 AM Revision 4816 (metacat): Remove initialization of MetacatUtil.buildIndexPaths in test files. This is taken care of in the background now using SystemUtil.getIndexPaths()
daigle

02/20/2009

01:28 PM Revision 4815 (metacat): update workers.properties with more standard ajp13 worker name (not used until apt-get install project)
daigle
11:16 AM Bug #3822: Spatial part of advanced search doesn't work
In include_advancedsearch.jsp, changed the javascript calls to lenght() to be just length (without parens). Michael Daigle
11:13 AM Revision 4814 (metacat): Removed the () from the javascript length functions in the submitRequest function.
daigle
09:58 AM Bug #3833 (Rejected): Advanced search (liveMap) map doesn't display on linux firefox
The map applet in advanced search doesn't display on unbuntu linux running firefox 3. duplicated this on my machine ... Michael Daigle

02/19/2009

04:56 PM Bug #3823: "make" dependency causes build to fail on windows
Does this also prevent installation of the various CGI files that might depend on that make successfully completing? Matt Jones
04:53 PM Bug #3823: "make" dependency causes build to fail on windows
Added a property to build.properties called make.perl.code. Setting this to false will block the cgi make from runni... Michael Daigle
04:49 PM Revision 4813 (metacat): add a build property "make.perl.code" so the cgi make can be turned off in build.xml on machines without make.
daigle
04:37 PM Bug #3826: Remove jdbc properties from build.properties if not needed
Removed database properties from build.properties. Michael Daigle
04:36 PM Bug #3825: indexPaths should be more readable in build.properties
Changed the indexPaths property to be multi-line and alphabetized. Had to modify SortedProperties to read multi-line... Michael Daigle
04:35 PM Bug #3830 (New): Add the ability to modify multi-line properties
Right now, SortedProperties will read a multi-line property, but not modify one. It should be able to modify a multi... Michael Daigle
04:30 PM Revision 4812 (metacat): Format indexPaths in metacat.properties. Remove from build.properties and build.xml. Move indexPath list getter from MetacatUtil to SystemUtil.
daigle

02/18/2009

11:31 AM Bug #3777: Move Tomcat libraries into metacat build
Review comments on ticket 3824 Michael Daigle
11:19 AM Bug #3777: Move Tomcat libraries into metacat build
We used to include those libs back in the Tomcat 3 days, but took them out as
the servlet library jars changed in Tom...
Matt Jones
11:30 AM Bug #3824: Normalize the app deploy dir in build.properties
Yeah, makes sense. Unfortunately, there is another domain specific issue (to be solved) which is that the knb websit... Michael Daigle
11:19 AM Bug #3824: Normalize the app deploy dir in build.properties
We used to include those libs back in the Tomcat 3 days, but took them out as
the servlet library jars changed in Tom...
Matt Jones
11:12 AM Bug #3824: Normalize the app deploy dir in build.properties
Referencing ticket 3777 which moves tomcat libs into metacat project and eliminates build.tomcat.dir from build.prope... Michael Daigle
11:09 AM Bug #3824: Normalize the app deploy dir in build.properties
My response:
The problem with 3 A is that the build.tomcat.dir is not necessarily the same as the app.deploy.dir. O...
Michael Daigle
04:27 PM Bug #3824 (Resolved): Normalize the app deploy dir in build.properties
Per Duane Costa:
in build.properties file:
app.deploy.dir=/usr/local/devtools/jakarta-tomcat/webapps
It wo...
Michael Daigle
04:32 PM Bug #3826 (Resolved): Remove jdbc properties from build.properties if not needed
Per Duane Costa:
In build.properties:
The 'database' property and all the 'jdbc' properties
are still in t...
Michael Daigle
04:29 PM Bug #3825 (Resolved): indexPaths should be more readable in build.properties
Per Duane Costa:
In build.properties:
'indexPaths' is an important property, but its value is
very difficult...
Michael Daigle
04:26 PM Bug #3823 (Resolved): "make" dependency causes build to fail on windows
Per duane costa:
There's a platform dependency on 'make' which is a blocker for building the source distribution o...
Michael Daigle
04:24 PM Bug #3822 (Resolved): Spatial part of advanced search doesn't work
Per Duane Costa:
I tested a number of searches in the 'default' skin and almost everything ran fine. However, the...
Michael Daigle
04:01 PM Revision 4811 (metacat): Replace System.out.println statements with logMetacat statements.
daigle

02/17/2009

02:45 PM Revision 4810 (metacat): moved file from metacat/bin to metacat/src/scripts/bash since eclipse uses <project>/bin as a default build directory and these files will consistently get blown away locally by eclipse.
daigle
02:22 PM Revision 4809 (metacat): Replace System.out.println statements with logMetacat statements.
daigle
09:37 AM Bug #3819: Error writing to replication log
Fixed Michael Daigle
09:36 AM Bug #3819 (Resolved): Error writing to replication log
If the replication log directory does not exist, the replication code throws warnings. Changed the PropertyAdmin to ... Michael Daigle
09:32 AM Revision 4808 (metacat): Update replication documentation and fix code so that replication log is available.
daigle
09:30 AM Revision 4807 (metacat): Add troubleshooting instructions for map issues with firefox 3 and safari
daigle
09:29 AM Revision 4806 (metacat): remove semicolon at the end of xml.useFullSchemaValidation property.
daigle
09:28 AM Revision 4805 (metacat): Separate the concept of a backup file location and a metacat external directory location. These can be totally different.
daigle

02/12/2009

02:12 PM Bug #3818: Maps don't load for mac and windows
Windows needed to be rebooted to work.
The mac issues were known issues. Mapbuilder will not work right against f...
Michael Daigle
11:41 AM Bug #3818: Maps don't load for mac and windows
Seeing this in Safari on mac as well Michael Daigle
11:14 AM Bug #3818 (Resolved): Maps don't load for mac and windows
Maps are not loading on mac running firefox 3.0.1 and Win XP running firefox 3.0.6 (those were all we tested so far).... Michael Daigle
09:06 AM Bug #3817: Documents with DTD declarations cannot be inserted
Fixed the DTD registration in the xml_catalog table.
Now just warning about pre-existing DTDs when [re]fetching from ...
ben leinfelder
09:02 AM Bug #3817 (Resolved): Documents with DTD declarations cannot be inserted
Background:
Working with Choonhan Youn at SDSC (cyoun@sdsc.edu): they are developing a skin that makes use of the FG...
ben leinfelder
05:40 PM Revision 4803 (metacat): Fixes include:
-Overwriting existing DTDs on the filesystem if they exist and registration in the DB failed
-only registering a DTD ...
ben leinfelder

02/11/2009

02:52 PM Revision 4802 (metacat): Fix formatting for ecogrid testing section
daigle
02:33 PM Revision 4801 (metacat): Add instructions for how to test the web registry, web ldap, and ecogrid registry service.
daigle
10:36 AM Bug #3814: Backed up directories are not getting read during configuration
fixed on bug 3813 Michael Daigle
10:36 AM Bug #3813: Local save of backup location is not being written
Made sure a local file was written to the user's home directory. The file is at <user_home>/.<application_context> Michael Daigle
 

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