Metacat

10/26/2011

06:59 PM Bug #5520 (Resolved): Create replication integration test suite

Replication integration tests should include:
-force replication between two servers -- A, B (write, update, delete)... ben leinfelder

06:31 PM Bug #5519 (Resolved): Replicated data files are 0 bytes

We set up 2-way replication between PPBio and PELD (Brazilian Metacat instances) and have since seen that the replica... ben leinfelder

04:30 PM Bug #2084: Pathquery support for temporal search on date fields

This should be in 2.0.0 since it is already in the trunk. The upgrade script is the only thing I am worried about -- ... ben leinfelder

04:11 PM Bug #5262: EML document owner can't read the document

Probably solution is to use Java's canonicalization routines to normalize the DN, as Ben has done on the DataONE DNs.... Matt Jones

03:59 PM Bug #5244: ldapweb.cgi shouldn't report ou=Account accounts since they're unusable

Need to check with Shaun if this is actually fixed. Matt Jones

03:54 PM Bug #4651: data packages losing data tables (and then finding them again)

Unable to replicate. Please reopen if more details emerge. Matt Jones

03:48 PM Bug #4442: Spatial indexing should not run and block metacat

Related to bug #3811. Matt Jones

03:47 PM Bug #5518 (In Progress): Track down the performance issue of metacat query.

Matt queried knb with the word "water". It took one minute and half. We need to figured out why it so slow. Jing Tao

03:46 PM Bug #3811: Spatial caches should be backed up and restored

Decided that its best to move these files to /var/metacat by default. Matt Jones

03:44 PM Bug #5234: Replication -- user does not have permission to update access rule for data file

In v1.9.5 we use a null replication user to perform replication (rather than the user_owner from the xml_documents ta... ben leinfelder

03:17 PM Bug #4900: LDAP referral connection timeout

Decided that #3 is not feasible since accounts may be in groups defined on various LDAP servers. ben leinfelder

01:20 PM Bug #5517 (Resolved): mark EcoGrid and Servlet APIs as deprecated

EcoGrid and Servlet APIs in metacat are being replaced (gradally) by the DataONE services. Mark these older APIs as ... Matt Jones

01:19 PM Bug #5516 (Resolved): continue updating user documentation

Documentation needs editing to describe new 2.0.0 features, including support for new DataONE APIs, deprecation of ol... Matt Jones

01:15 PM Bug #5515 (Resolved): change version to 2.0.0 in prep for release

To prepare for the release, change te version number to 2.0.0 for all documentation, including README, Sphinx docs, etc. Matt Jones

01:01 PM Bug #5288: Metacat got "java.lang.OutOfMemoryError: PermGen space" after new geoserver update

Not sure if there is an action here. Maybe add this information to the Metacat documentation/faq? Matt Jones

12:47 PM Bug #4083: Metacat doesn't declare XML document encoding

I think these encoding issues have been fixed by Ben in trunk, but we need to discuss it to see if anything further n... Matt Jones

12:38 PM Bug #1601: Metacat will add default value for optional parameter into eml 2 document

Marking as complete, because the read problem is fixed based on now reading original from disk. The insert problem i... Matt Jones

12:34 PM Bug #4275: Earthgrid REST API Implementation

Task now being handled via #5011 DataONE service API implementation. This original work on interfaces has been obsol... Matt Jones

12:17 PM Bug #5514: implement DataONE service API

Duplicate bug to #5011. Matt Jones

12:15 PM Bug #5514 (Resolved): implement DataONE service API

Support the new DataONE service API for interoperable data repositories:
http://mule1.dataone.org/ArchitectureDocs... Matt Jones

12:10 PM Bug #5513 (Resolved): add support for DOI identifiers from EZID

DOI identifiers can be created through the EZID service run by the California Digital Library. See:
http://n2t.ne... Matt Jones

11:08 AM Revision 6545 (metacat): correctly check that user is logged into metacat before proceeding

ben leinfelder

11:07 AM Revision 6544 (metacat): use null session for now

ben leinfelder

10/25/2011

05:54 PM Revision 6543 (metacat): draft of legacy-to-d1 account mapping interface

ben leinfelder

10/20/2011

02:03 PM Revision 6542 (metacat): add User-Agent logging to support D1 requirements

ben leinfelder

12:40 PM Revision 6541 (metacat): remove old RestServlet handler -- not used now

ben leinfelder

10/16/2011

10:47 AM Revision 6540 (metacat): Add debugging output to MNodeService.

Chris Jones

10/14/2011

05:49 PM Revision 6539 (metacat): use default fmtid if we can't find the user-supplied data mime type in our list

ben leinfelder

05:13 PM Revision 6538 (metacat): including newer d1 libclient that uses Foresite (and Jena) to construct/parse ORE resource maps for DataONE

ben leinfelder

02:57 PM Revision 6536 (metacat): delete the xml access rules by either docid or guid to make sure we have the most up to date information

ben leinfelder

10:45 AM Revision 6535 (metacat): Fix a data-typing issue when pulling replicationAllowed from postgres. Use getBoolean(), not getString().

Chris Jones

10/13/2011

05:13 PM Revision 6534 (metacat): cleaned up to use for populating a DataONE MN using the D1 api. Retrieves packages from a Metacat and generates system metadata for them before calling MN.create() for both data and metadata.

NOTE: you need a client certificate that the target server accepts (either DataONE-generated for testing or a CILogon... ben leinfelder

10/12/2011

07:19 PM Revision 6533 (metacat): IdentifierManager.getSystemMetadata() was missing the number_replicas and replication_allowed fields when building a ReplicationPolicy section of a SystemMetadata document being returned. Add in these two attributes.

Chris Jones

11:17 AM Revision 6532 (metacat): update D1 jars to include recent SubjectList -> SubjectInfo refactoring and the SUBJECT_PUBLIC constant

ben leinfelder

11:08 AM Revision 6531 (metacat): include SystemMetadata when replicating data and metadata documents -- this allows us to establish the guid-to-docid mapping that is crucial for being able to read the replicated document by guid (d1 api)

ben leinfelder

10:00 AM Revision 6530 (metacat): throw InvalidToken when the Session parameter is null for create()

https://redmine.dataone.org/issues/1850 ben leinfelder

10/11/2011

08:37 PM Revision 6529 (metacat): Fix service versioning in metacat.properties so that when Metacat nodes are registered they report the correct service version for use in resolve() -- i.e., use "v1" instead of "0.6.4" in resolve urls.

Matt Jones

10/09/2011

02:50 PM Revision 6528 (metacat): Once a CN calls replicate() on an MN, the MN needs to call getReplica() on the source MN (not get()). Once the bytes are retrieved, the MN must then call back to the CN with setReplicationStatus() to indicate that the replication status is complete. Modify MNodeService to do so.

Chris Jones

10/03/2011

04:06 PM Bug #5499: citation format odd for metacat data sets

There isn't a community standard as far as I know. There are people working on proposing such a standard (DataCite, ... Matt Jones

09/30/2011

06:22 PM Bug #5499: citation format odd for metacat data sets

Inclusion of the institution seems appropriate for a dataset citation. Granted, it is not in journal article citatio... gastil gastil

09/29/2011

11:43 PM Revision 6527 (metacat): Bug fix for access control rules coming in from the dataone system metadata. Previously, the code used getLocalId() to get the docid to insert into the XML access table, but that docid included the revision number (e.g., foo.1.1), which it shouldn't. Now use the AccessionNumber class to strip off the rev to get a real docid for insertion into the table.

Matt Jones

09/28/2011

07:39 PM Bug #5497: metacat accepts eml docs that fail knb parser

This sample EML document is using single quotes around the EML namespace (which should be valid) but Metacat was only... ben leinfelder

07:28 PM Revision 6526 (metacat): allow the XML namespace to be given in both double _and_ single quotes. The regex pattern was only looking for xmlns values that were in double quotes. This was brought to light by LTER:

http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5497 ben leinfelder

09/27/2011

09:24 PM Bug #5499 (Resolved): citation format odd for metacat data sets

Submitting on behalf of Gail... I agree with her assesment -- what are we rendering citations this way. Somehow this... Matt Jones