Activity
From 09/28/2011 to 10/27/2011
10/27/2011
- 10:23 PM Bug #3815: Ampersand character not correctly encoded
- Using the Java MetacatClient API to insert a document with & also worked fine (no additional encoding of the & sy...
- 08:23 PM Bug #3815: Ampersand character not correctly encoded
- Using the dev skin to load an XML document with an ampersand encoded as: & kept the character intact. To me, this...
- 07:41 PM Bug #5054: Unable to insert large EML documents and no error status returned
- On first inspection, it appears that the request is coming into Metacat with no parameters set when I use the dev ski...
- 07:00 PM Bug #5273: docs with inline-data allow invalid xml into metacat
- I tried this with the attached inline.xml file that has an invalid unescaped ampersand in the inline section -- Metac...
- 06:58 PM Bug #5273: docs with inline-data allow invalid xml into metacat
- This file uses unescaped ampersand (&) in the inline data section.
- 05:51 PM Revision 6561 (metacat): move the DataONE 1.0.0-SNAPSHOT
- 04:33 PM Revision 6560 (metacat): correctly check for missing config values during geoserver configuration
- 04:05 PM Bug #5515: change version to 2.0.0 in prep for release
- updated docs and the source tree to use tomcat6 rather than tomcat5.5
- 04:05 PM Revision 6559 (metacat): call the web.xml tomcat6 not tomcat5
- 04:01 PM Revision 6558 (metacat): remove reference to tomcat5.5 in favor of tomcat6. including the "custom" start up script that used the sun jdk -- this can be configured rather than coded into the script.
- 03:59 PM Revision 6557 (metacat): correctly check for missing config values during geoserver configuration
- 03:45 PM Revision 6556 (metacat): remove reference to the "custom" /etc/init.d/tomcat6 script -- this should not be used since there are now better ways to customize the tomcat start up
- 03:27 PM Revision 6555 (metacat): use 2.0.0
- 03:21 PM Revision 6554 (metacat): -use 2.0.0 version
- -use tomcat6
-use /var/lib/tomcat6 as the example tomcat home directory - 02:22 PM Revision 6553 (metacat): use 2.0.0 -- stub out the release notes
- 02:13 PM Revision 6552 (metacat): Configure and use CertificateManager in order to act as the MN when performing replicate() and getReplica() mthods.
- 01:30 PM Bug #3811: Spatial caches should be backed up and restored
- If someone wants to put the spatial cache in /var/metacat they will have to do it manually, then configure metacat (w...
- 01:01 PM Bug #2084: Pathquery support for temporal search on date fields
- Will exercise this during testing for release.
- 01:00 PM Revision 6551 (metacat): use logging, not system.out
- 12:40 PM Revision 6550 (metacat): change upgrade scripts/routines to use 2.0.0 version number instead of 1.10.0
- 11:35 AM Revision 6549 (metacat): make sure we close the prepared statement always
- 11:17 AM Revision 6548 (metacat): The incoming source node param is just a string, not XML, so don't attempt to deserialize it. Rather, just make a new NodeReference object and set it's value to the value of the incoming param.
- 08:58 AM Revision 6547 (metacat): include CILogon link and more explanation about what is going on with the mapping.
- 08:49 AM Revision 6546 (metacat): Change the version from 1.9.4 to 1.9.5.
10/26/2011
- 06:59 PM Bug #5520 (Resolved): Create replication integration test suite
- Replication integration tests should include:
-force replication between two servers -- A, B (write, update, delete)... - 06:31 PM Bug #5519 (Resolved): Replicated data files are 0 bytes
- We set up 2-way replication between PPBio and PELD (Brazilian Metacat instances) and have since seen that the replica...
- 04:30 PM Bug #2084: Pathquery support for temporal search on date fields
- This should be in 2.0.0 since it is already in the trunk. The upgrade script is the only thing I am worried about -- ...
- 04:11 PM Bug #5262: EML document owner can't read the document
- Probably solution is to use Java's canonicalization routines to normalize the DN, as Ben has done on the DataONE DNs....
- 03:59 PM Bug #5244: ldapweb.cgi shouldn't report ou=Account accounts since they're unusable
- Need to check with Shaun if this is actually fixed.
- 03:54 PM Bug #4651: data packages losing data tables (and then finding them again)
- Unable to replicate. Please reopen if more details emerge.
- 03:48 PM Bug #4442: Spatial indexing should not run and block metacat
- Related to bug #3811.
- 03:47 PM Bug #5518 (In Progress): Track down the performance issue of metacat query.
- Matt queried knb with the word "water". It took one minute and half. We need to figured out why it so slow.
- 03:46 PM Bug #3811: Spatial caches should be backed up and restored
- Decided that its best to move these files to /var/metacat by default.
- 03:44 PM Bug #5234: Replication -- user does not have permission to update access rule for data file
- In v1.9.5 we use a null replication user to perform replication (rather than the user_owner from the xml_documents ta...
- 03:17 PM Bug #4900: LDAP referral connection timeout
- Decided that #3 is not feasible since accounts may be in groups defined on various LDAP servers.
- 01:20 PM Bug #5517 (Resolved): mark EcoGrid and Servlet APIs as deprecated
- EcoGrid and Servlet APIs in metacat are being replaced (gradally) by the DataONE services. Mark these older APIs as ...
- 01:19 PM Bug #5516 (Resolved): continue updating user documentation
- Documentation needs editing to describe new 2.0.0 features, including support for new DataONE APIs, deprecation of ol...
- 01:15 PM Bug #5515 (Resolved): change version to 2.0.0 in prep for release
- To prepare for the release, change te version number to 2.0.0 for all documentation, including README, Sphinx docs, etc.
- 01:01 PM Bug #5288: Metacat got "java.lang.OutOfMemoryError: PermGen space" after new geoserver update
- Not sure if there is an action here. Maybe add this information to the Metacat documentation/faq?
- 12:47 PM Bug #4083: Metacat doesn't declare XML document encoding
- I think these encoding issues have been fixed by Ben in trunk, but we need to discuss it to see if anything further n...
- 12:38 PM Bug #1601: Metacat will add default value for optional parameter into eml 2 document
- Marking as complete, because the read problem is fixed based on now reading original from disk. The insert problem i...
- 12:34 PM Bug #4275: Earthgrid REST API Implementation
- Task now being handled via #5011 DataONE service API implementation. This original work on interfaces has been obsol...
- 12:17 PM Bug #5514: implement DataONE service API
- Duplicate bug to #5011.
- 12:15 PM Bug #5514 (Resolved): implement DataONE service API
- Support the new DataONE service API for interoperable data repositories:
http://mule1.dataone.org/ArchitectureDocs... - 12:10 PM Bug #5513 (Resolved): add support for DOI identifiers from EZID
- DOI identifiers can be created through the EZID service run by the California Digital Library. See:
http://n2t.ne... - 11:08 AM Revision 6545 (metacat): correctly check that user is logged into metacat before proceeding
- 11:07 AM Revision 6544 (metacat): use null session for now
10/25/2011
10/20/2011
- 02:03 PM Revision 6542 (metacat): add User-Agent logging to support D1 requirements
- 12:40 PM Revision 6541 (metacat): remove old RestServlet handler -- not used now
10/16/2011
10/14/2011
- 05:49 PM Revision 6539 (metacat): use default fmtid if we can't find the user-supplied data mime type in our list
- 05:13 PM Revision 6538 (metacat): including newer d1 libclient that uses Foresite (and Jena) to construct/parse ORE resource maps for DataONE
- 02:57 PM Revision 6536 (metacat): delete the xml access rules by either docid or guid to make sure we have the most up to date information
- 10:45 AM Revision 6535 (metacat): Fix a data-typing issue when pulling replicationAllowed from postgres. Use getBoolean(), not getString().
10/13/2011
- 05:13 PM Revision 6534 (metacat): cleaned up to use for populating a DataONE MN using the D1 api. Retrieves packages from a Metacat and generates system metadata for them before calling MN.create() for both data and metadata.
- NOTE: you need a client certificate that the target server accepts (either DataONE-generated for testing or a CILogon...
10/12/2011
- 07:19 PM Revision 6533 (metacat): IdentifierManager.getSystemMetadata() was missing the number_replicas and replication_allowed fields when building a ReplicationPolicy section of a SystemMetadata document being returned. Add in these two attributes.
- 11:17 AM Revision 6532 (metacat): update D1 jars to include recent SubjectList -> SubjectInfo refactoring and the SUBJECT_PUBLIC constant
- 11:08 AM Revision 6531 (metacat): include SystemMetadata when replicating data and metadata documents -- this allows us to establish the guid-to-docid mapping that is crucial for being able to read the replicated document by guid (d1 api)
- 10:00 AM Revision 6530 (metacat): throw InvalidToken when the Session parameter is null for create()
- https://redmine.dataone.org/issues/1850
10/11/2011
10/09/2011
10/03/2011
- 04:06 PM Bug #5499: citation format odd for metacat data sets
- There isn't a community standard as far as I know. There are people working on proposing such a standard (DataCite, ...
09/30/2011
- 06:22 PM Bug #5499: citation format odd for metacat data sets
- Inclusion of the institution seems appropriate for a dataset citation. Granted, it is not in journal article citatio...
09/29/2011
09/28/2011
- 07:39 PM Bug #5497: metacat accepts eml docs that fail knb parser
- This sample EML document is using single quotes around the EML namespace (which should be valid) but Metacat was only...
- 07:28 PM Revision 6526 (metacat): allow the XML namespace to be given in both double _and_ single quotes. The regex pattern was only looking for xmlns values that were in double quotes. This was brought to light by LTER:
- http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5497
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