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From 11/07/2011 to 12/06/2011

12/06/2011

03:48 PM Bug #5563 (Resolved): Kepler can't get search result from metacat 2.0.0
I used kepler 2.3 to do a % query against a metacat which was built from the trunk. It didn't show any result. Actual... Jing Tao

12/05/2011

09:02 AM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
Hi, Ben:
I just tried and the sql error has gone. Thanks!
However, it seems that all worklfow and run kar files are...
Jing Tao

12/03/2011

05:36 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
One problem was that the predicate expression was incorrectly escaping the predicate quotes -- now that they are prep... ben leinfelder
04:23 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
The parameterValues is:
[karEntry/karEntryAttributes/tpcStatus, mainAttributes/lsid, karEntry/karEntryAttributes/Name...
Jing Tao
04:22 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
The sql statement is:
select xml_nodes.docid, xml_index.path, xml_nodes.nodedata, xml_nodes.parentnodeid, xml_nodes....
Jing Tao
04:21 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
The pathquery doesn't work:
<pathquery version='1.2'><returndoctype>http://www.kepler-project.org/kar-2.0.0</returndo...
Jing Tao
04:19 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
Okay. It turned out the query on comment 2 does work. Jing Tao

12/02/2011

03:39 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
i added a printStatckTrace statement and it gave me this:
at org.postgresql.core.v3.SimpleParameterList.bind(SimplePa...
Jing Tao
03:36 PM Bug #5561: Got a SQL error when click TPC workflows or TPC link on sanparks skin
actually, it is not only for the sanpark skin. This query will cause same issue:
<?xml version="1.0"?>
<pathquery ver...
Jing Tao
10:31 AM Bug #5561 (Resolved): Got a SQL error when click TPC workflows or TPC link on sanparks skin
Clicked TPC status, I saw:
knb 20111202-10:30:51: [ERROR]: DBQuery.createResultDocument - SQL Error: The column in...
Jing Tao
11:28 AM Bug #5562: Got an NPE when upgrade db from 1.9.5 to 2.0.0
it was possible to have a null prepared statement if there were no data values to convert to dates -- now checking fo... ben leinfelder
11:23 AM Bug #5562 (Resolved): Got an NPE when upgrade db from 1.9.5 to 2.0.0
knb 20111202-11:20:14: [ERROR]: SkinsAdmin.configureSkins - Could not find properties for skin: semtools [edu.ucsb.nc... Jing Tao
11:25 AM Bug #5560: Upgrade access control rules in Metacat DB
By removing the 'docid' column from the 'xml_access' table, we introduce a huge amount of refactoring -- the custom E... ben leinfelder
09:02 AM Bug #5560 (Resolved): Upgrade access control rules in Metacat DB
Metacat handles a single access control policy for ALL revisions of an object whereas DataONE allows different access... ben leinfelder
04:34 PM Bug #5547: Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
If you login on the sanparks home page, you will get the login form when you click Register Data link. It seems that ... Jing Tao

12/01/2011

03:43 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
Use accessBlock parameter on setaccess action to replace the original access rules by the new access rules. The new a... Jing Tao
12:29 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
Disregard the Xerces panic -- I had an old XercesImpl.jar hanging out in my classpath. ben leinfelder

11/30/2011

01:06 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
Using the Foresite library in Metacat to build the ORE maps fails because of jar dependencies. The dependencies are a... ben leinfelder

11/29/2011

09:46 AM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
reopen this bug since ben added a comment on bug 5553:
There is currently a method in Metacat's access API that allo...
Jing Tao
04:53 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
Now we had temporary solution for set/revoke public readable access:
user can grant public access to a document, then...
Jing Tao
09:38 AM Bug #5553: setaccess action may have deleting access rule functionality
Sounds like we can use it. However, we have to parse the returned result of action=getaccesscontrol in order to prese... Jing Tao
09:16 AM Bug #5553: setaccess action may have deleting access rule functionality
There is currently a method in Metacat's access API that allows you to set the entire access block for a given docume... ben leinfelder
04:53 PM Bug #5553: setaccess action may have deleting access rule functionality
When this bug is fixed, we should reopen the bug 5551:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5551
Jing Tao

11/28/2011

02:36 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
For the issue on comment 4, I found the clientViewBean object wasn't set sesssion id in ClientViewHelper.java. After ... Jing Tao

11/23/2011

02:55 PM Bug #5553 (New): setaccess action may have deleting access rule functionality
Currently, setaccess action can only add access rules to the metacat. There is a limitation.
Sometimes, we want to...
Jing Tao
02:48 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
Also i noticed after set the access, the delete, update and set access button disappeared. Only download button can b... Jing Tao
02:36 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
Since "setaccess" action can add access rules, this will cause problem.
Since the documents' allow rules for public r...
Jing Tao
02:23 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
To a none-public readable document, if we click the set access button with the checked public read check box, the doc... Jing Tao
01:59 PM Bug #5551: Set public access button on the FGDC document display page doesn't work (on sanparks skin).
The kepler_kepler_21 is a FGDC document with the public readable access rule. Here is the record on xml_access:
keple...
Jing Tao
11:09 AM Bug #5551 (Resolved): Set public access button on the FGDC document display page doesn't work (on sanparks skin).
When I tried to grant a public readable access to a nonpublic readable document, i got an error:
User public does n...
Jing Tao
01:07 PM Bug #5537: Move replication control panel to /admin servlet
There is now a separate /admin screen for replication configuration. Now /replication can require SSL client certific... ben leinfelder
11:00 AM Bug #5530: Sanparks skin shows update and delete action when user public reads a FGDC package
Ben:
Okay. This is the current behavior. I am going to close the bug.
Jing Tao
10:44 AM Bug #5530: Sanparks skin shows update and delete action when user public reads a FGDC package
I think the checkbox should reflect the current state of the document. If it is unchecked, that indicates that it is ... ben leinfelder
05:10 PM Bug #5530: Sanparks skin shows update and delete action when user public reads a FGDC package
If fgdc-root.xsl, it has the control to display the buttons or not. The control is the parameter "enableFGDCediting".... Jing Tao

11/21/2011

02:22 PM Bug #5548 (New): Replace COS Mime multipart library
Here is a comment from Matt in bug 5543:
The COS Mime multipart library is incredibly old, and we should
seriousl...
Jing Tao
02:20 PM Bug #5543: Can't upload a FGDC metadata file with a data file in SANParks skin
Ben committed a new version of cos.jar file and modified the MetacatClient.java to handle the file size being -1. In ... Jing Tao
11:33 AM Bug #5543: Can't upload a FGDC metadata file with a data file in SANParks skin
We may not even have to require a known size -- Metacat isn't storing that information. Sure, the new DataONE apis us... ben leinfelder
10:17 AM Bug #5547 (New): Couldn't get the Register Data Form after login under Register Data tab on Sanparks skin
When you click "Register Data" tab on Sanparks skin, it will show a login form if you haven't login. However, it will... Jing Tao

11/19/2011

07:51 PM Bug #5543: Can't upload a FGDC metadata file with a data file in SANParks skin
Jing --
I'm not sure what the right solution is here, but here are some thoughts. First, trying to get the length o...
Matt Jones
05:58 PM Bug #5543: Can't upload a FGDC metadata file with a data file in SANParks skin
After dug around the code, i figured out the problem is at the CoientViewHelper.java.
In handlePackageUpload method,...
Jing Tao

11/18/2011

04:04 PM Bug #4728: grant document management privileges to admin user
Admin user[s] now have complete control of the Metacata data and metadata. The list of items here (1-6) are covered n... ben leinfelder

11/17/2011

02:40 PM Bug #5544 (Resolved): the footer of the output page after clicking TPC status/workflow can't be read on Sanparks skin
The text of the footer of the output page is black and can be read when a user click TPC workflow/status menu. Jing Tao
02:31 PM Bug #5542: Data Package Upload form in SANParks skin missing the description text
In footer, set some text to be regwhitetext. So everything looks fine. Jing Tao
02:30 PM Bug #5542: Data Package Upload form in SANParks skin missing the description text
The text was not missing, but its color was white and couldn't be read.
The regtext class in sanparks.css was set:
....
Jing Tao
12:03 PM Bug #5533: Sanpark skin main page has login issue
For the first issue that a user could not log in on IE, the reason is IE invalid the login form after a div, which co... Jing Tao

11/16/2011

02:55 PM Bug #5543 (Resolved): Can't upload a FGDC metadata file with a data file in SANParks skin
I tried to use the data package upload form to upload a FGDC file, it succeeded. However, if i uploaded a FGDC file w... Jing Tao
02:45 PM Bug #5542 (Resolved): Data Package Upload form in SANParks skin missing the description text
It misses the text like:
Enter the Meta Data File (*.xml)
Enter Data File 1 (*.shp)
Enter Data File 2 (*.dbf)
....
Jing Tao

11/15/2011

01:30 AM Bug #5513: add support for DOI identifiers from EZID
I created a new library called 'ezid' in its own project that can be used to access the EZID REST services from withi... Matt Jones

11/11/2011

09:10 AM Bug #5537 (Resolved): Move replication control panel to /admin servlet
Instead of using the SSL client certificate secured /replication servlet to administer replication settings via the w... ben leinfelder
09:00 AM Bug #5531: Remove/make optional the DataONE MN registration that occurs during Metacat configuration
There is now a separate admin configuration screen for dataone:
-you can bypass it in the same way you can bypass geo...
ben leinfelder

11/09/2011

03:19 PM Bug #5353: EcogridWriter doesn't work with the metacat built from trunk.
Both Jing and I were unable to replicate this bug testing against a more recent Metacat trunk build ben leinfelder
02:56 PM Bug #5353: EcogridWriter doesn't work with the metacat built from trunk.
I tried this out with Kepler 2.1, writing sample EML 2.0.0 and EML 2.1.0 metadata (and data files). All worked out fi... ben leinfelder
12:14 PM Bug #5353: EcogridWriter doesn't work with the metacat built from trunk.
Is there a sample Kepler workflow we can use to debug this? ben leinfelder
02:28 PM Bug #3815: Ampersand character not correctly encoded
I just tried the registry on a test machine running most recent Metacat trunk and the ampersand was correctly encoded... ben leinfelder
12:47 PM Bug #5536: Restore replicated data files that are 0 bytes
Matt suggests an alternative approach: delete the files and the DB records for those files so that the next timed rep... ben leinfelder
12:23 PM Bug #5536 (Resolved): Restore replicated data files that are 0 bytes
Due to a replication bug, some data files were not replicated fully. These should be tracked down and restored. ben leinfelder
12:44 PM Bug #4405: PISCO, KNB and LTER have different query result for SBC datasets.
Running the query against the PISCO server returned the expected 14 records. ben leinfelder
12:33 PM Bug #5532: Use strict build tag strategy for 2.0.0 release
Looks good to me. Matt Jones
12:31 PM Bug #5532: Use strict build tag strategy for 2.0.0 release
Proposed tags. Please comment.
-eml schema 2.1.1 (tags/RELEASE_EML_2_1_1)
-eml style sheets (tags/RELEASE_EML_UTILS_1...
ben leinfelder
12:22 PM Bug #5519: Replicated data files are 0 bytes
This is fixed. We just need to figure out the files that have not replicated successfully. Any 0-length files on KNB ... ben leinfelder
12:20 PM Bug #3811: Spatial caches should be backed up and restored
The final step in the process should be to _NOT_ regenerate the spatial cache during 2.0 configuration. ben leinfelder
12:13 PM Bug #5288: Metacat got "java.lang.OutOfMemoryError: PermGen space" after new geoserver update
added to word doc ben leinfelder
12:03 PM Bug #5513: add support for DOI identifiers from EZID
I've managed to get UCSB to agree to pay for an EZID account from CDL that we'll be able to use to programatically as... Matt Jones
10:31 AM Bug #5535 (New): The 611 CDR documents replicated to KNB need to be repaired by fixing their inline data.
This bug is the section 4 of the ongoing concerns:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=3296
During...
Jing Tao
09:59 AM Bug #5534 (Resolved): Replication log somehow doesn't work.
Metacat logged the some important replication information into the metacatreplication.log file which stays in the dir... Jing Tao
09:41 AM Bug #3296: Replication: Many EML documents fail to replicate
Follow-up to the previous comment of 2008-06-05:
1. There are still 94 documents that fail to replicate. These are a...
Duane Costa

11/08/2011

08:19 AM Bug #5533: Sanpark skin main page has login issue
An additional message from judith:
Jing
I notice that when you login through the web page on firefox You get the me...
Jing Tao
05:43 PM Bug #4356: knb website query result shows old version of a document
Ben and I tested the updating and query on both forced replication and timed replication between two metacats. We cou... Jing Tao
04:07 PM Bug #4356: knb website query result shows old version of a document
I used a morpho to create a eml document and insert it to metacat. Then i did a search and records was added to xml_q... Jing Tao
 

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