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From 10/10/2013 to 11/08/2013

11/09/2013

04:36 PM Revision 8379 (metacat): Change the mime type to text/xml.
Jing Tao
04:34 PM Revision 8378 (metacat): Add the nceas' logo here.
Jing Tao
04:32 PM Revision 8377 (metacat): Add nceas's logo.
Jing Tao

11/08/2013

03:42 PM Revision 8376 (metacat): Use java script in the index.html to create the page. So the account skin doesn't involve any java classes.
Jing Tao
03:39 PM Revision 8375 (metacat): Use the special web.xml to build the account.war.
Jing Tao
03:38 PM Revision 8374 (metacat): Add a specify web.xml for the account war file which only contains the cgi and style stuff.
Jing Tao
02:19 PM Revision 8373 (metacat): use metacatUI 1.2.0 tag for building into Metacat 2.3.0 release.
ben leinfelder
01:56 PM Revision 8372 (metacat): use 2.3.0 without SNAPSHOT pre-release.
ben leinfelder
01:50 PM Revision 8371 (metacat): switch to 1.2 branch of metacatui and make sure fullclean actually removes the metacatui_build directory.
ben leinfelder
08:33 AM Bug #6194 (Closed): publish service does not create an ORE document
ben leinfelder

11/07/2013

02:17 PM Bug #6191 (Closed): Wrap ldapweb.cgi links from register-data.cgi metacatui template in div
ben leinfelder
09:16 AM Revision 8370 (metacat): surround the ldap account tools in a div so we can replace them with theme-specific links as needed in the metacatUI. https://projects.ecoinformatics.org/ecoinfo/issues/6191
ben leinfelder
09:14 AM Bug #6193 (Closed): obsoleted versions of objects show up in KNB theme
ben leinfelder

11/06/2013

04:27 PM Revision 8369 (metacat): always return the metacat logout form when calling the perl registry logout action, even when there is no perl session to invalidate -- needed for metacatui.
ben leinfelder
04:25 PM Revision 8368 (metacat): use "Username" in header
ben leinfelder

11/05/2013

03:27 PM Revision 8366 (metacat): include update statement for marking newer revisions
ben leinfelder
02:31 PM Revision 8365 (metacat): use UI RC3 tag
ben leinfelder
01:04 PM Revision 8364 (metacat): use RC2 metacatui tag
ben leinfelder
04:27 PM Bug #6183 (Resolved): CNodeService API calls don't honor authoritative MN certificates
Implemented the D1NodeService.isAuthoritativeNodeAdmin() method and put them into the appropriate place. The both MN ... Jing Tao

11/04/2013

02:35 PM Revision 8363 (metacat): use RC1 metacatUI tag
ben leinfelder
01:57 PM Bug #6194 (In Progress): publish service does not create an ORE document
Will deploy and test this on dev2. ben leinfelder
01:56 PM Revision 8362 (metacat): generate ORE object when publishing even if there was not an ORE for the original package. https://projects.ecoinformatics.org/ecoinfo/issues/6194
ben leinfelder

11/01/2013

12:31 PM Bug #6193 (In Progress): obsoleted versions of objects show up in KNB theme
Tested on dev2 and it works as expected:
original:
http://dev2.nceas.ucsb.edu/metacat/d1/mn/v1/meta/knb.438.1
pu...
ben leinfelder
12:05 PM Bug #6193: obsoleted versions of objects show up in KNB theme
Corrected my comments (was reading too fast this morning) - yes, the MN.update() call should be updating the obsolete... ben leinfelder
10:33 AM Bug #6193: obsoleted versions of objects show up in KNB theme
That's not what I am seeing. Did you change something manually?
The sysmeta for the new DOI: https://knb.ecoinfor...
Matt Jones
07:29 AM Bug #6193: obsoleted versions of objects show up in KNB theme
This is not a UI issue, the SM.obsoletedBy field is null for 'solson.11.6'. This was supposed to be fixed by https://... ben leinfelder
11:53 PM Bug #6193 (Closed): obsoleted versions of objects show up in KNB theme
From the MetacatUI page for solson.11.6, I logged in and used the Publish button to generate the DOI doi:10.5063/F1QN... Matt Jones
08:23 AM Bug #4690 (Closed): register-dataset.cgi should have its permissions set
Now using runtime exec to do a chmod +x on the *.cgi files during the main configuration. ben leinfelder
07:57 AM Bug #4690: register-dataset.cgi should have its permissions set
Can do this on *nix deployments. ben leinfelder
08:22 AM Revision 8361 (metacat): set registry permissions when configuring the exploded war on *nix systems. https://projects.ecoinformatics.org/ecoinfo/issues/4690
ben leinfelder
07:34 AM Feature #6196 (Rejected): ORE documents should be generated for new EML records from the Metacat API
This behavior was added in v2.2.0. https://projects.ecoinformatics.org/ecoinfo/issues/6061 ben leinfelder
12:16 AM Feature #6196 (Rejected): ORE documents should be generated for new EML records from the Metacat API
Currently, if a metadata document is uploaded via the Metacat API (action=insert or action=update), it does not conta... Matt Jones
11:59 PM Bug #6194 (Closed): publish service does not create an ORE document
When the 'publish' service is called from the GUI in MetacatUI, it should generate an OAI-ORE package so that the lin... Matt Jones

10/31/2013

04:48 PM Bug #6191 (Closed): Wrap ldapweb.cgi links from register-data.cgi metacatui template in div
ben leinfelder
01:46 PM Bug #6183: CNodeService API calls don't honor authoritative MN certificates
This method will be applied to both the CN and MN methods. Jing Tao
01:07 PM Revision 8360 (metacat): Add the methond named isAuthoritativeMNodeAdmin method. It applies to both CN and MN methods.
Jing Tao
09:57 AM Revision 8359 (metacat): include href on the captcha link so that it shows as a pointer -- but doesn't navigate anywhere.
ben leinfelder
09:41 AM Feature #6099 (Closed): Remove temporary LDAP accounts after X amount of time has passed
Now removing expired user accounts in the dc=tmp subtree. This is done whenever someone tries to register an account ... ben leinfelder
09:34 AM Revision 8358 (metacat): include perl DateTime module in registry install instructions. https://projects.ecoinformatics.org/ecoinfo/issues/6099
ben leinfelder
09:31 AM Revision 8357 (metacat): actually remove the entry if it is expired (uncomment the function call). https://projects.ecoinformatics.org/ecoinfo/issues/6099
ben leinfelder
08:02 AM Revision 8356 (metacat): correct the createTimestamp filter and search base -- only remove inetOrgPerson entries, not any underlying structure that was added to store these temporary accounts. https://projects.ecoinformatics.org/ecoinfo/issues/6099
ben leinfelder
05:22 PM Bug #6185 (New): Chinese characters are sorted before alphanumeric characters
Not sure if this is a MetacatUI or Metacat bug?
It may be technically correct, but it is not very user friendly to...
Lauren Walker

10/30/2013

03:37 PM Revision 8355 (metacat): On calls to archive(), log the correct call (not delete()).
Chris Jones
03:25 PM Bug #6183 (Resolved): CNodeService API calls don't honor authoritative MN certificates
In working with Mark Reyes on calling CN.archive() and CN.setObsoletedBy() calls for the Merritt repository, he repor... Chris Jones
12:23 PM Revision 8354 (metacat): correct some syntax errors, date filter formatting. https://projects.ecoinformatics.org/ecoinfo/issues/6099
ben leinfelder
10:50 AM Bug #3218 (Closed): nceas skin front page has font size differences
Matt Jones
10:45 AM Bug #213 (New): transaction support for packages
Need to decide if this transaction feature is useful or not, and if not then delete this request. We have operated f... Matt Jones
10:44 AM Feature #6109 (Closed): Keep the SOLR index for obsoleted objects
Now, the solr index has the same behavior of the cn: remove the index for archived objects; keep the index for obsol... Jing Tao
10:42 AM Bug #1366 (Rejected): Changes in review entry page
Rejecting this bug report because it is no longer relevant bcse we aren;t supporting review entry any longer, plus it... Matt Jones
10:39 AM Bug #433 (Closed): browse interface to metacat
Closing as no longer relevant with the new MetacatUI theme work. Matt Jones
10:37 AM Revision 8353 (metacat): Renamed the test class.
Jing Tao
10:22 AM Feature #6099 (In Progress): Remove temporary LDAP accounts after X amount of time has passed
Trying a dry-run of this on dev2. Using 36 hour expiration for now - configurable in metacat.properties on a per-orga... ben leinfelder
10:19 AM Revision 8352 (metacat): Rename the IndexGenerator to IndexGeneratorTimerTask.
Jing Tao
10:16 AM Revision 8351 (metacat): clear temporary accounts that have not been activated after a configurable number of hours. https://projects.ecoinformatics.org/ecoinfo/issues/6099
ben leinfelder
08:49 AM Story #6114 (Closed): Include updated D1 indexing library
I believe this is complete. ben leinfelder
08:47 AM Revision 8350 (metacat): change method name from copy and paste.
ben leinfelder
07:02 AM Revision 8349 (metacat): add more details about 2.3.0 features in the README
ben leinfelder

10/29/2013

03:48 PM Revision 8348 (metacat): do not include default organization for the metacatui "skin"
ben leinfelder
11:51 AM Revision 8347 (metacat): do not include admin moderator for registry entries by default.
ben leinfelder
11:14 AM Revision 8346 (metacat): show the Organization input field now that we will use keywords for the working group.
ben leinfelder
07:38 AM Feature #6109 (Rejected): Keep the SOLR index for obsoleted objects
I believe we decided to keep this as is: removing archived objects from the index, but keeping the entries that have ... ben leinfelder
08:21 PM Revision 8345 (metacat): Fixed a bug that when a data file was archived, the solr index for the metadata object still kept the "documents" element.
Jing Tao
05:49 PM Revision 8344 (metacat): made the delete method synchronized.
Jing Tao

10/28/2013

04:54 PM Revision 8343 (metacat): If an object was archived, the solr index will be removed for it.
Jing Tao
11:01 AM Feature #6109: Keep the SOLR index for obsoleted objects
Note: we only removed the solr index for the archived objects. Jing Tao
10:56 AM Feature #6109 (In Progress): Keep the SOLR index for obsoleted objects
Currently, the solr index will keep both obsoleted and archived objects. The cn only keeps obsoleted objects but remo... Jing Tao

10/26/2013

05:22 PM Revision 8342 (metacat): Create a utility target to generate a war file which manage ldap accounts - register, password set.
Jing Tao

10/24/2013

02:03 PM Revision 8341 (metacat): Make UI include the Organization (called "site" in the form params) instead of the registry code. https://projects.ecoinformatics.org/ecoinfo/issues/6162
ben leinfelder

10/21/2013

02:01 PM Revision 8340 (metacat): Adding theme configuration screenshot to docs
Lauren Walker
01:56 PM Revision 8339 (metacat): use 2.3.0 for this next release of metacat.
ben leinfelder
12:56 PM Revision 8337 (metacat): correct rst formatting.
ben leinfelder
12:44 PM Revision 8336 (metacat): make sure all versions are using 2.2.2 of some sort -- thinking of making this release a 2.3.0 release because we will be branching/tagging from the trunk, not the 2.2.x branch.
ben leinfelder

10/18/2013

04:01 PM Bug #6161 (Closed): Add access_log indexes to support DataONE log retrieval
These are in the trunk now. For large repositories, it may be necessary to increase postgres configuration values so ... ben leinfelder
12:14 PM Bug #6161 (Closed): Add access_log indexes to support DataONE log retrieval
ben leinfelder
12:16 PM Revision 8335 (metacat): add 2 indexes to speed up dataONE log retrieval. https://projects.ecoinformatics.org/ecoinfo/issues/6161
ben leinfelder
09:38 AM Revision 8334 (metacat): Added Lauren to contributors list in the metacat guide, and made the two lists match in sort order.
Matt Jones

10/17/2013

04:04 PM Bug #6123: Rework on the IndexGenerator class in the metacat-index module
I am thinking of the issues about moving the class to Metacat:
This class is a backup plan. If we move it to Metac...
Jing Tao
01:43 PM Bug #6157 (Resolved): Couldn't control the log level in solr
It turned out that the solr-core.jar and other solr jar files are using the slf4j logging mechanism. It comes with tw... Jing Tao
01:36 PM Bug #6157 (Resolved): Couldn't control the log level in solr
Our current log control didn't work with the log from solr. It has the default value - INFO. The log message was very... Jing Tao
01:33 PM Revision 8333 (metacat): 1.Remved the dependency on solr-core since the metacat-common alreay has the dependency.
2.Excluded the slf4j-log jar files since we are using slf4j-log4j jar file. Jing Tao
12:26 PM Revision 8332 (metacat): Use the slf4j-log4j jar to replace slf4j-jdk one.
Jing Tao
05:27 PM Revision 8328 (metacat): Change the version to 2.2.2
Jing Tao
05:24 PM Bug #6154 (Resolved): The metacat configuration showed that it was done even though the dataONE configuration hadn't been touched
Add a new class DataONEConfigUtil. It has a method to determine if the configuration for DataONE is done or not.
Thi...
Jing Tao
05:23 PM Bug #6154 (Resolved): The metacat configuration showed that it was done even though the dataONE configuration hadn't been touched
It seems the configuration ignore the dataONE part. Jing Tao
05:19 PM Revision 8327 (metacat): Fixed a bug that the configuration page shows complete even though the DataONE configuration hadn't done yet.
Jing Tao
05:18 PM Revision 8326 (metacat): Add a util class for dataone configuration.
Jing Tao
05:17 PM Revision 8325 (metacat): Change the button from Cancel to Bypass. So it is consistent with the Geoserver configuration page.
Jing Tao

10/16/2013

04:31 PM Revision 8324 (metacat): Add a jsp file to display the schema modification exception.
Jing Tao
04:29 PM Revision 8323 (metacat): Add code the display the SchemaModification exception.
Jing Tao
08:46 PM Revision 8321 (metacat): Fixed a catch clause syntax which is only compatible with java 1.7.
Jing Tao

10/15/2013

03:39 PM Revision 8320 (metacat): Add code the overwrite the schema.xml in the solr-home/conf.
Jing Tao
03:37 PM Revision 8319 (metacat): Add two scripts to update the db to 2.2.2
Jing Tao
10:34 AM Bug #6141 (Closed): Permission denied to update/publish metadata for group member on Gulfwatch
ben leinfelder
10:31 AM Bug #6141 (In Progress): Permission denied to update/publish metadata for group member on Gulfwatch
In the branch - being included in 2.2.1 patch for MN and CNs ben leinfelder
08:36 AM Bug #6141: Permission denied to update/publish metadata for group member on Gulfwatch
Yes, she was logged in fully. I was tailing the logs and watched her log in, and could see the entry scroll by. Als... Matt Jones
06:47 AM Bug #6141: Permission denied to update/publish metadata for group member on Gulfwatch
My first guess is that there is something not quite right with the login/session since the error message only mention... ben leinfelder
10:34 AM Bug #6136 (Closed): files left open causes too many file descriptors on OS
ben leinfelder
10:33 AM Bug #6142: Metacat.property guid.ezid.unitemplate.metadata includes context
This is in the 2.2 branch. ben leinfelder
06:47 AM Bug #6142: Metacat.property guid.ezid.unitemplate.metadata includes context
This should be included in the upcoming patch release. ben leinfelder
10:31 AM Bug #6138 (Closed): Metacat-index assumes default "knb" context
ben leinfelder

10/14/2013

03:22 PM Revision 8314 (metacat): Fixed a bug that the group information couldn't be retrived from the session.
Jing Tao

10/12/2013

05:39 PM Bug #6142 (Resolved): Metacat.property guid.ezid.unitemplate.metadata includes context

This has been changed to just be the hostname only.
The metacat.properties file on the Gulfwatch server is also ...
Lauren Walker
05:36 PM Bug #6141 (Closed): Permission denied to update/publish metadata for group member on Gulfwatch
Sarah Clark was unable to publish metadata on Gulfwatch even though she is a member of the evos group which has permi... Lauren Walker

10/11/2013

04:35 PM Revision 8313 (metacat): Change the guid.ezid.uritemplate.metadata property value to the hostname only, with no context
Lauren Walker
02:57 PM Revision 8312 (metacat): Add properties to keep the hash values for the schema.xml of the solr.
Jing Tao
02:42 PM Revision 8311 (metacat): Fixed compile error that an ioexception should be caught.
Jing Tao
11:07 AM Revision 8310 (metacat): Use the setting from the metacat-common component.
Jing Tao
11:06 AM Revision 8309 (metacat): Some settings will be shared between metacat and metacat-index components.
Jing Tao

10/10/2013

01:01 PM Revision 8307 (metacat): prep project for 2.2.1 patch release -- will also merge to the 2.2.x branch.
ben leinfelder
12:43 PM Bug #6136: files left open causes too many file descriptors on OS
A brief overview of how I was inspecting memory, threads, file descriptors, etc. while stress testing Metacat. This ... Matt Jones
12:27 PM Revision 8306 (metacat): correctly configure metacat-index to use metacat context/deployment location. https://projects.ecoinformatics.org/ecoinfo/issues/6138
ben leinfelder
12:12 PM Bug #6138 (Closed): Metacat-index assumes default "knb" context
ben leinfelder
09:39 AM Task #6040: Metacat-index does not handle <references>
Even with a SAX parser, the implementation could keep track of all elements with "id" attributes and anytime a "refer... ben leinfelder
09:36 AM Task #6040: Metacat-index does not handle <references>
Skye said that the sax parser is used to parse those information. This change may require to use DOM parser. It is a... Jing Tao
09:37 AM Bug #6137 (Resolved): Add a new action reindexall to reindex all the solr index
Just leave as it is. Jing Tao
09:33 AM Task #6110 (Resolved): Use a new schema of dataone solr index so that the author last name can be sortable
Skype released a "buildout" component DATAONE-CN-INDEX_v1.2.1. It only has the schema change. Now our schema is using... Jing Tao
09:20 AM Revision 8305 (metacat): Change the svn location of the schema.xml file to d1_cn_index_processor 1.2.1. The 1.2.1 release is a "buildout" release. There was no code change.
Skye change the attribute "stored" to be true for the authorSurNameSort and authorGivenNameSort. Otherwise the sortin... Jing Tao
 

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