Use the ServiceFailure to replace the InvalidRequest when it is the read-only mode (CN throws the exception).
In the replicate method, the checking of the read-only mode was moved from MNodeService class to the MNResourceHandler class since it is asynchronized.
The systemmetadataChanged method is asynchronized, so we put the read-only checking on the ResourceHandler class.
Add the code to check if the mn is on the read-only mode.
Move the editScienceMetadata method to the MNodeService class - only update packageId in EML on publish()
The archived field can't be reset to false if it is true in the systemMetadataChanged method.
In the systemMetadataChanged method, we will update system metadata when the local serial version is less than or equals the comming one.
refs #7453: modified the metacatLog message from mn.synchronizationFailed to include the syncFailed.message field. Also increased the log level to WARN.
Remove the method editScienceMetadata from the update method. This method will add a packageId attribute into the eml document. Lauren will add the method to the publish method.
In the systemMetadataChanged method, the object will be archived if the new archive value is true and old value is false.The log event is recorded in the systemMetadataChanged method as well.
Make the isAuthoritativeNode throw exception if some value is null.
In the updateSystemMetadata method, we avoid to log the event twice for archive=true.
Add the case the mn.updateSystemMetadata and cn.updateSystemMetadata will call the archive method internally.
Refactory the mn.archive and cn.archive method so the mn.update and cn.update can reuse them.
Update the packageId attribute in EML documents on update. Never display the local docid in the rendered EML.
Add a flag on the systemMetadataChanged method. If it is true, the authoritative member node will only accepts the serial version and replica list; the replica node accepts everything. If it is false, it will accept everything.
Add the code to check the date of system metadata modification match in MN.updateSystemMetadata only. CN.updateSystemMetadata doesn't check.
Add the code to check if we can't get the current system metadata from the node in the mn.systemMetadataChanged method.If we can't find it, an InvalidRequest will be thrown.
Fixed some incorrect exceptions in the getReplica method.
Use the application/bagit-097 to replace application/bagit.
Use the D1NodeVersionChecker to determine the mn's version rather than using ping.
Only support the application/bagit format in the getPackage method.
Use the status of mn.ping to guess the version of the source node in the replicate method.
In the replicate method, it will use the v1.getReplica method if the source node only supports v1 replication service.
Increase the version number after updating the existing object's system metadata in the update method.
On mn.update and mn.updateSystemMetadata, those clients are allowed:1. CNs.2. Clients with appropriate permission calling the method on the authoritative nodes.
Add code to catch the BaseException in the updateSystemMetadata method.
Add the code to handle if the cn is null.
Handle multiple versions (v1 and v2) of a service in getCapacity method.
Use the NodeReference object to replace the replicaStatus to restrict the listObjects method.
[re]register DOI when system metadata is updated (typically access policy). https://projects.ecoinformatics.org/ecoinfo/issues/6796
Add the code to call cn.synchroinize at the method of updateSystemMetadata.
Add the code to check if the client is trying to update an archived object. If it is, reject it.
Refactory the authorize methods on D1NodeService.Add the check for whom can call mn.updatesystemMetadata.
Created the updateSystemMetadata method.
Add the code to support CNView interface in CNodeService. Both CNodeService and MNodeService share the same code base.
Add the code transform a sid to a pid in publish, getPackage and view method. Fefer dataONE #6734.
The MN.listobjects and CN.listobjects methods will call the one in the D1NodeService class.
Moved the rules for the SID from D1NodeService.create to MNodeService.create.Also moved the code to check the validation of an pid from D1NodeService.create to MNodeService.create, MNodeService.replicate and CNodeService.create.
Add the code to check the if the new series id is legitimate in the systemMetadataChanged method.
Add the code to support the sereis id on isAuthorized and systemMetadataChanged method.
Add the code to handle the sid in the delete and archive method.
Fixed a bug in comparing two identifiers in the update method.
Add a check that the sid shouldn't equals the pid in the update and create method.
Add the code the check if the format of the sid is valid in the system metadata.
Enforce the sid requirement in the update method.
Enforce the mn.getChecksum only to handle an PID.
Fixed a bug that the method getLocalId swallowed an exception incorrectly in the IdentifierManager.
Write the input stream into the file system without alteration in dataone create and update methods.
add support for v2 DataONE API.
Include PDF version of the metadata in the package download. https://projects.ecoinformatics.org/ecoinfo/issues/6053
take advantage of the ezidclient for multi-threaded/asynchronous DOI registration. This will be most useful for doing large batch updates and not so much for the one-at-a-time publish actions but works in either context. https://projects.ecoinformatics.org/ecoinfo/issues/6440
correct the ORE lookup query syntax and add junit assertion to check that it continues to function as expected. https://projects.ecoinformatics.org/ecoinfo/issues/6529
recursively submit obsoleted objects for indexing when instructed. https://projects.ecoinformatics.org/ecoinfo/issues/6424
add comment (and commented out code) for possibly inspecting the /dirtySysMeta call for archive=true flag. https://projects.ecoinformatics.org/ecoinfo/issues/6417
make all objects in a package publicly readable when published. https://projects.ecoinformatics.org/ecoinfo/issues/6415
make all package contents publicly readable when publishing with a DOI. https://projects.ecoinformatics.org/ecoinfo/issues/6415
Unify solr indexing with an IndexTask that is added to the queue -- allows us to send more than just the systemMetadata to the indexer. Initially this is for READ event counts for each document. https://projects.ecoinformatics.org/ecoinfo/issues/6346
retrieve the given file names (entityName) of the data files from the EML and use those for our file names in the BagIt content.
Change the BagIt file names to the pid+resource type. Create new Files instead of createTempFile to avoid the randomly generated numbers in the name.
Add the code to set the replication status when some exceptions happen.
generate ORE object when publishing even if there was not an ORE for the original package. https://projects.ecoinformatics.org/ecoinfo/issues/6194
Add the methond named isAuthoritativeMNodeAdmin method. It applies to both CN and MN methods.
do not modify existing SystemMetadata on MN.update() if something goes wrong during content insertion. https://projects.ecoinformatics.org/ecoinfo/issues/6101
require authenticated session when minting a DOI/other identifier. https://projects.ecoinformatics.org/ecoinfo/issues/6086
only attempt to generate OREs for objects that we know not to have them already. https://projects.ecoinformatics.org/ecoinfo/issues/6061
better checking for ORE maps when publishing DOIs (need to update the packages that contain sci meta). https://projects.ecoinformatics.org/ecoinfo/issues/6061
Add code to throw an exception if the pathquery is not enabled.We also need to disable building index if the pathquery is disabled.
use consistent file names and zip content names. Opted for "-" separator so that the zip writer does not remove the unique part of the filename. https://projects.ecoinformatics.org/ecoinfo/issues/6054
copy the original systemMetadata when publishing a revision in order to avoid overwriting the original values - the shared map is listening! https://projects.ecoinformatics.org/ecoinfo/issues/6014
use custom FileInputStream subclass to delete the temporary bagit zip when the inputstream is closed (after someone has downloaded the zip).
use ObjectFormatCache instead of ObjectFormatService because we are not calling it as a CN.
include the localid when rendering the view (used in stylesheets)
use ObjectFormatCache.getInstance().getFormat() instead of the CN service (the MN does not typically act as a CN!)
include mn.publish() REST endpoint handling. https://projects.ecoinformatics.org/ecoinfo/issues/6024
implement the view service (uses existing skin-based dbtransform) - and include the REST endpoint. https://projects.ecoinformatics.org/ecoinfo/issues/6028
use StreamSource instead of StringReader for method signature -- can be used with different sources this way. https://projects.ecoinformatics.org/ecoinfo/issues/6019
include GET /package/{pid} endpoint in MN service. https://projects.ecoinformatics.org/ecoinfo/issues/6027
MN.getPackage() - test with ORE that includes 2 data files and a "metadata" file (still should be using EML for that test). https://projects.ecoinformatics.org/ecoinfo/issues/6026
First pass at MN.getPackage() implementation using Bagit library from LOC. https://projects.ecoinformatics.org/ecoinfo/issues/6026
add method for publishing existing object (usually assumed to be scimeta) with a DOI. https://projects.ecoinformatics.org/ecoinfo/issues/6014
use an independent ISet<SystemMetadata> structure to communicate objects that should be indexed by metacat-index. https://projects.ecoinformatics.org/ecoinfo/issues/5943
Solr will be enabled if it is in the db.enabledEngines.
Use some contants from the EnabledQueryEngines.
use ContentTypeInputStream interface (and ByteArray implementation) to specify the desired content-type of the InputStream returned by MN.query().
Use the set of subjects to replace the user and groups for the solr query.
Use a new class to handle the solr query engine description request.
Add the access query filter.
Add code to handle the solr index information. we still need to figure out how to get the information.
Add the solr engine to the engine list.
Add code to handle solr query.
Merging the METACAT_2_0_6_BRANCH changes for [M|C]NodeService into the trunk.
refactor DOI registration into separate class. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513
refactor using ezid-client changes that split field names and values into separate enums. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513
Correctly mint and register DOIs in teh MN API implementation. Add tests to exercise minting and creating. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513
register DOIs with minimal DataCite metadata. still need to determine which details to include and when, but the plumbing is in place as we refine those rules. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5513
disable EZID/DOI minting by default since we do not yet have a means of tracking minted DOIs and augmenting metadata for them when we actually receive the object in a subsequent create() or update() call. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5753
generate ID from UUID. http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5840
make sure serial version is included or set on MN.update().http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5793
first pass at DOI minting using the EZID service in mn.generateIdentifier()http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5755