Ecoinformatics Redmine

01/18/2013

04:17 PM Morpho Bug #5795 (Resolved): Centralize identifier conflict resolution during save LOCAL+NETWORK

After splitting the identifier conflict resolution code into separate Local and Network classes, it turns out this ca... ben leinfelder

04:13 PM Morpho Bug #5128: access list does not show all dns in the LTER LDAP tree

This is a symptom of a server-side issue -- defer to that bug. ben leinfelder

04:11 PM Morpho Bug #4418: "about" box displays incorrect version number

At the very least there must be someway to change the 1.0 to a more meaningful number ben leinfelder

03:12 PM Morpho Bug #5793: SystemMetadata missing for updated EML doc

Two pronged approach to this:
-updated Metacat's MN.update() implementation to set the SM.serialVersion to default va... ben leinfelder

01:54 PM Morpho Bug #5793: SystemMetadata missing for updated EML doc

It looks like this is because the SM.serialVersion value was null.
We can fix this in Morpho by using a real value, b... ben leinfelder

01:51 PM Morpho Bug #5793: SystemMetadata missing for updated EML doc

Here is the full stacktrace:
knb 20130118-19:28:04: [ERROR]: Error while creating systemmetadata record: tao.392 [ed... ben leinfelder

01:41 PM Morpho Bug #5793 (Resolved): SystemMetadata missing for updated EML doc

Following the procedure outlined in #5792, we do not see the record for SystemMetadata in the Metacat systemMetadata ... ben leinfelder

01:45 PM Morpho Bug #5794 (Resolved): Cannot add only Genus with Common Name

In the taxonomic import screen, Sarah Clark tried to add a Genus+Common Name without including a corresponding Specie... ben leinfelder

10:30 AM Morpho Bug #1508: New Data Table Wizard: Last Step does not add Table every time

Sounds like no one can reproduce this... ben leinfelder

10:18 AM Morpho Bug #1708: data import wizard crashes when you click finish

I have not seen this behavior in the modern generation of Morpho (last 5 years). ben leinfelder

10:14 AM Morpho Bug #5791: The login window shows the subject of name as the login user name

now the DN will not show up in the username field. ben leinfelder

10:04 AM Morpho Bug #5791: The login window shows the subject of name as the login user name

Yeah, I think it should just be blank since we are not saving the username or organizational affiliation in the profi... ben leinfelder

10:07 AM Morpho Bug #2465: new lines are displayed in the text boxes but do not show after text entries saved

The whitespace is preserved, but when displayed online (or in Morpho using the EML stylesheets) the newlines are not ... ben leinfelder

09:16 AM Morpho Bug #1514: Citation DPW

Leaving this as is - seems to be a conscious decision that only Authors are added to this section. ben leinfelder

09:05 AM Morpho Bug #1514: Citation DPW

I believe the buttons are "Move up" and "Move down" and are readable in the current generation of Morpho (1.10/2.0). ... ben leinfelder

01/17/2013

02:35 PM Morpho Bug #942: wrong icon appears for data in package from metacat

Modern versions of EML (2.0.1-2.1.1) do not use this multiple-file/triples business for packaging. Closing this. ben leinfelder

02:29 PM Morpho Bug #1502: Text on dpw screen 4 of 15 makes it sound like associated party info is required

I can kind of see that from the overview page, but the actual associated party page, as dan mentioned, does not have ... ben leinfelder

02:21 PM Morpho Bug #1228: Open command not working correctly on older versions of Morpho

very old problem ben leinfelder

02:20 PM Morpho Bug #1239: morpho fails when lastId gets out of sync

Sounds like it correctly checked for the last id, but on a different server. At any rate, this is all different in v ... ben leinfelder

02:17 PM Morpho Bug #2795: The delete selected row feature does not always work.

Deleting blank rows that I added seems to work. ben leinfelder

02:03 PM Morpho Bug #2799: Access List doesn't include groups at LDAP root

We changed to use the CN account and group listing for this rather than Metacat.getPrincipals(). ben leinfelder

02:01 PM Morpho Bug #1773: Importing code table results in display of ID numbers, not code values

Morpho renders this reference correctly. Perhaps this was never closed when it was completed. ben leinfelder

01:51 PM Morpho Bug #1848: Error message when exporting data package without saving it

Tried this on trunk (upcoming morpho 2.0.0) and it works as expected. ben leinfelder

12:50 PM Morpho Bug #5787: Morpho Help build fails

Fixed now. But be warned -- when building a release you must build the help jar and commit it to SVN as it is not par... ben leinfelder

12:23 PM Morpho Bug #5787 (Resolved): Morpho Help build fails

I noticed the help is stale and started looking into it. I'm having errors when building the morphohelp.jar ben leinfelder

12:09 PM Morpho Bug #1521: Column name labels in Morpho Data Table Display disappear

The bold faced headers show even if the column width is made smaller than the width of the text. Assume some improvem... ben leinfelder

12:03 PM Morpho Bug #5141: offer a choice to "cancel" from any save

There is now a "Cancel" button on the id conflict screen. If you choose to cancel at that point you can. I agree it i... ben leinfelder

11:55 AM Morpho Bug #5139: morpho "preferences" and query speed

Sounds like we will punt on this. We are moving to a newer search mechanismin Metacat a la DataONE that will use SOLR... ben leinfelder

11:52 AM Morpho Bug #5128: access list does not show all dns in the LTER LDAP tree

Link the the ticket is dead.
We can't really provide a complete list of all the IP addresses that might follow the ld... ben leinfelder

11:46 AM Morpho Bug #5613: Consolidate the metacat code in morpho

Update to 2.0.0 ben leinfelder

11:46 AM Morpho Bug #4961: user guide error re: how to import taxonomic coverage from file

Will be in v2.0.0 ben leinfelder

11:37 AM Morpho Bug #5622: Modify morpho package id management when we switch to dataone

Moving to 2.0.0 milestone -- I believe this feature is addressed in another bug and is well underway. ben leinfelder

11:35 AM Morpho Bug #4625: authenticate against KNB, switch source to DEV, and still have access

Morpho is switching to certificate-based authentication and will not be tied to any particular Member Node (Metacat) ... ben leinfelder

11:30 AM Morpho Bug #4031: More features in supporting SSL in morpho

I think our understanding and use of SSL has improved over the past three years. For Morpho 2.0 we have removed the c... ben leinfelder

11:26 AM Morpho Bug #3873: "Enter Information about Owners" wizard reorders dataset creators

This just got fixed - it came up with our EVOS users and percolated to the top of the pile. ben leinfelder

11:20 AM Morpho Bug #2210: Displaying taxonomic information imported from table

I am updating the EML documentation (embedded in the eml-coverage.xsd source) to use species binomial in the red mapl... ben leinfelder

11:12 AM Morpho Bug #2094: "New Profile" keyboard navigation skips page 2

There is no longer a Metacat screen, so this is probably a moot point. (tested key navigation in os x and it worked w... ben leinfelder

11:10 AM Morpho Bug #1992: DP Wizard: lat/long coordinates not displayed correctly or saved

Editing geographic coordinates and then re-editing them works for me with no loss or perceived loss of user-entered d... ben leinfelder

10:59 AM Morpho Bug #1555: Unable to open data files of local data packages that are created in another profile

I cannot open a datapackage from a different profile than my current profile. Closing. ben leinfelder

10:55 AM Morpho Bug #5117: Add an "Edit Profile..." dialog

In Morpho 2.0, the profile will no longer be tied to any specific log-in. The profile will still store a scope for id... ben leinfelder

10:52 AM Morpho Bug #5264: EML 2.1.1 support

This has been in Morpho since 1.10.0 ben leinfelder

10:50 AM Morpho Bug #5238: Use UTF-8 for file reading and writing

This should be closed. UTF-8 is used exclusively in Morpho - especially important now that we have so much internatio... ben leinfelder

01/16/2013

03:06 PM Morpho Bug #5783: Import Taxonomic coverage does not allow quoted column values

this is committed ben leinfelder

02:31 PM Morpho Bug #5783: Import Taxonomic coverage does not allow quoted column values

Now stripping the escape quotes from the values when importing them. This is both in trunk and the 1.10.0 branch ben leinfelder

12:53 PM Morpho Bug #5779: Owners list reorders its entries

This is in trunk and also was merged into the 1.10.0 branch in case we want to do a minor 1.10.1 release. ben leinfelder

12:52 PM Morpho Bug #5784: Import Taxonomic coverage does not handle code/definition enumerations very well

There was a slight bug in how the code/def values were retrieved from attributes that provided them. We were processi... ben leinfelder

01/15/2013

03:06 PM Morpho Bug #5784 (Resolved): Import Taxonomic coverage does not handle code/definition enumerations very well

In a data package where some columns were annotated to use an enumerated domain (code=definition) the taxonomic impor... ben leinfelder

03:04 PM Morpho Bug #5783 (Resolved): Import Taxonomic coverage does not allow quoted column values

WHen importing taxonomic coverage from a data table, the import process includes the quotes around each field if the ... ben leinfelder

01/14/2013

05:17 PM Morpho Bug #5779: Owners list reorders its entries

(Meant to close this the last time) ben leinfelder

05:17 PM Morpho Bug #5779: Owners list reorders its entries

Turns out the order was entirely the luck of the draw in terms of Map implementations. I forced the use of a TreeMap ... ben leinfelder

05:08 PM Morpho Bug #5779: Owners list reorders its entries

This also happens for Associated Parties and Contacts ben leinfelder

03:28 PM Morpho Bug #5779 (In Progress): Owners list reorders its entries

When 4 or more parties are listed in the Owners wizard page, they reorder themselves when you click 'Ok'.
It seems t... ben leinfelder

11:58 AM Morpho Bug #5777: Can't save a data package which was created by the new data pacakage wizard to the DataONE network

THe metadata map was being updated to reflect the new EML identifier, but the map that has D1Objects keyed by identif... ben leinfelder

01/09/2013

11:57 AM Morpho Bug #5737: Refactor Access page to use SystemMetadata rather than EML

adding D1Object.isSystemMetadataDirty might be tricky since it is in the d1 library ben leinfelder

11:22 AM Morpho Bug #5737: Refactor Access page to use SystemMetadata rather than EML

Saving the SM for entities when the access policy has changed (but the actual data file has not) is fine for local sa... ben leinfelder

01/03/2013

01:59 PM Morpho Bug #5741: Decide on login procedure

I have Morpho using the Java ECP (simple-ecp-client) to get a client certificate. the library is in my github and I h... ben leinfelder

12/31/2012

02:45 PM Morpho Bug #5741: Decide on login procedure

I have the "simple-ecp-client" java library in use in Morpho now. I'm working with the developer for that project to ... ben leinfelder