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From 09/24/2008 to 10/23/2008

10/24/2008

05:53 PM Bug #3560 (New): Color-code contents of CollectionDisplay
The CollectionDisplay actor provides a live, XML-formatted view of the data stream arriving at the actor in a COMAD w... Timothy McPhillips
05:38 PM Bug #3559 (New): month field in trace file name is off by one
The name of a new run trace file comprises the name of the workflow, a timestamp, and a number distinguishing the tra... Timothy McPhillips

10/23/2008

04:46 PM Bug #2252: Need to add actors for aligning mulitiple DNA or protein sequences
Actors for running ClustalW and Gblocks are included in the ppod-actors module. Timothy McPhillips
04:33 PM Bug #3558 (New): Store each workflow run trace in it's own directory
The ppod-gui module includes enhancements to the Kepler GUI for browsing and viewing the traces of previously run wor... Timothy McPhillips
11:51 AM Bug #3557: Provide data dependency graph view in provenance browser
This is a well accepted data-dependency view, and in our current dependency view, we have included "actors" to make t... manish manish
11:21 AM Bug #3557 (New): Provide data dependency graph view in provenance browser
The provenance browser currently provides four views of a workflow run: the raw trace file, the "Collection History"... Timothy McPhillips
11:43 AM Bug #3552: Annotation elements in trace file do not appear in details pane of provenance browser
This feature has been implemented in a local version. Shawn and I are working on revised provenance model, which will... manish manish
05:25 PM Bug #3555 (New): enhancements to Trace File view in provenance browser
The provenance browser allows one to view the raw trace file (in XML format) of the run currently loaded in the brows... Timothy McPhillips

10/22/2008

03:36 PM Bug #3543: org.ecoinformatics.seek.R.RExpression
Thanks for reporting, I broke this with my last checkin when trying to clean up hardcoded paths. R wants paths to use... Derik Barseghian
07:49 AM Bug #3543 (Resolved): org.ecoinformatics.seek.R.RExpression
Actor is failing to properly generate directory name for setwd() R command. R is expecting "/" as file separators yet... Paul Allen
01:29 PM Bug #3547: CollectionReader actor throws exception when input file contains Metadata or Parameter elements
The problem was that AnnotationSet was trying to record invocation dependencies implied by the addition of annotation... Timothy McPhillips
10:59 AM Bug #3547 (Resolved): CollectionReader actor throws exception when input file contains Metadata or Parameter elements
The CollectionReader actor reads in an XML representation of the input to a COMAD workflow and translates the Collect... Timothy McPhillips
01:07 PM Bug #3552 (In Progress): Annotation elements in trace file do not appear in details pane of provenance browser
The provenance browser shows the details for the selected data or collection element of a trace in the lower left-han... Timothy McPhillips
10:40 AM Bug #3546 (New): Automatically load trace for a completed run into the provenance browser
At present, viewing the trace of a workflow run via the provenance browser (the one in the provenance-apps module) re... Timothy McPhillips

10/21/2008

04:21 PM Bug #3542 (Resolved): Tree View menu is too wide when opened
When you go to View => Tree View, the window opens as wide as the top level's _iconDescription, which is very long. I... Derik Barseghian

10/16/2008

02:33 PM Bug #3539: wierd behaviors of port parameter
workflow for testing port parameter jianwu jianwu
02:32 PM Bug #3539 (New): wierd behaviors of port parameter
when put a port parameter in a composite actor, there are some wierd behaviors:
I put DDF/PN in top level and have a...
jianwu jianwu
06:11 PM Bug #3531 (New): Save As dialog inconsistent between linux and mac
If in Kepler under linux you Save As a workflow, and give the workflow a filename with no extension, a .xml extension... Derik Barseghian

10/15/2008

04:23 PM Bug #3530: Locking assertion failure
Hauke had a similar bug, he wrote:
--start--
Running the triq/ptolemy.domains.sr.examples on linux with Java 1.6 work...
Christopher Brooks
03:46 PM Bug #3530: Locking assertion failure
Known workaround is available. Aaron Aaron
03:44 PM Bug #3530 (Resolved): Locking assertion failure
Specifically, I encountered this issue on Ubuntu version 8.04.1 (Hardy Heron) with dual displays using java 1.5
I ...
Aaron Aaron
03:17 PM Bug #3529: cannot always set parameters when running workflow from command line
I'll take this one. Maybe MoMLSimpleApplication is not the
place for this, since it makes the application not so sim...
Christopher Brooks
11:02 AM Bug #3529 (Resolved): cannot always set parameters when running workflow from command line
When -nogui is used, MoMLSimpleApplication loads and runs the workflow. This class does not support setting model par... Daniel Crawl

09/26/2008

12:32 PM Bug #3160: RBNBToKepler actors should work within SDF, PN and DDF
DataTurbine actor works within these three domains. The way it stops (by displaying an error) when the user hits stop... Derik Barseghian
12:30 PM Bug #3156: RBNBToKepler actors should only download data for connected ports.
Closing, bug 3159 has been closed. Derik Barseghian
12:29 PM Bug #3157: RBNBToKepler actors should support all three sink modes
Closing, the DataTurbine actor now has this functionality. Derik Barseghian
12:28 PM Bug #3158: RBNBToKepler actors need to timeout more quickly
Partially addressed by r7986, timeouts now 50% shorter (previously we were actually waiting through 2 OpenRBNBConnect... Derik Barseghian
12:18 PM Bug #3155: RBNBToKepler actors should allow different output formats
Closing, bug 3159 now fixed. Derik Barseghian
12:16 PM Bug #3159: RBNBToKepler datasource actors should be merged into one.
Done. The DataTurbine actor now provides all functionality. Derik Barseghian

09/24/2008

10:13 AM Bug #3312: DataTurbine (formerly RBNBToKepler) actor - error with empty server
fixed with revision 7979. Derik Barseghian
 

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