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From 10/24/2008 to 11/22/2008

11/21/2008

06:25 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
Some details on progress on this bug may be found here:
https://dev.kepler-project.org/developers/interest-groups/pro...
Derik Barseghian
04:36 PM Bug #3683 (Resolved): add tokenType to token_flow table in provenance sql schema
When retrieving a token_flow.data from SQL provenance into Kepler, it will be useful to know its tokenType. A new tok... Derik Barseghian
04:31 PM Bug #3633: New token type: By Reference / By Value
Refiling under Component core. Derik Barseghian
04:29 PM Bug #3668: Define contents of "Publication Ready Archive"
Filing under Provenance as requested in last reporting/provenance meeting. Derik Barseghian
04:29 PM Bug #3634: Define the interface between Provenance and Reporting
Filing under Provenance as requested in last reporting/provenance meeting. Derik Barseghian

11/20/2008

12:40 PM Bug #3607: Create model for the Report Object
Decided to keep this bug open to allow for additions or changes. debi staggs
12:38 PM Bug #3607: Create model for the Report Object
Created the Report Object class based on the initial Reporting requirements. debi staggs

11/17/2008

07:16 AM Bug #3595: Exporting an actor should prompt user to semantically annotate it if it's not already
I think it could also be possible for the actor and/or workflow to have been annotated with a semantic type, but the ... Shawn Bowers

11/14/2008

12:53 PM Bug #3630: Diagram Use Cases for SANPARKS specific actors.
The use case diagram now shows the sequence of steps for each potential use case for SANPARKS. debi staggs
12:51 PM Bug #3607: Create model for the Report Object
This should be a JAVA model that knows how to serialize and de-serialize and we also need to define the serialization... debi staggs
12:44 PM Bug #3673 (Resolved): Create model for the Report Instance (RIO)
Create the model for the Report Instance (RIO). This should be a JAVA model that knows how to serialize and de-seria... debi staggs
05:40 PM Bug #3672: Open/Save Workflow as KAR Archive
This is very similar to bug #3595, which is the same message but to do with the importing of just an actor kar.
See...
Derik Barseghian
04:29 PM Bug #3672 (Resolved): Open/Save Workflow as KAR Archive
Workflow fails to be imported from a kar file
I do the following
File->Open File
Choose getting-started/01-Simp...
Aaron Aaron

11/13/2008

02:54 PM Bug #3669: Tabbed pane interface for holding workflow canvas and additional GUI elements
I like this as well. We just were talking about UI stuff for the reporting subsytem, and one possible UI layout was ... Matt Jones
12:35 PM Bug #3669: Tabbed pane interface for holding workflow canvas and additional GUI elements
Ptolemy has a somewhat primitive tabbed interface in ptII/thales.
To run it, try
$PTII/bin/vergil -single
The interf...
Christopher Brooks
10:32 AM Bug #3669: Tabbed pane interface for holding workflow canvas and additional GUI elements
I like this! Indeed this is a great place for the long-running meme of "Data Central" and "Process Central". For exam... Bertram Ludaescher
10:20 AM Bug #3669 (Resolved): Tabbed pane interface for holding workflow canvas and additional GUI elements
A number of new user interface elements are being developed for Kepler. Some of these require considerable screen re... Timothy McPhillips
02:40 PM Bug #3667: Mock-up Report Designer UI
first draft in SVN:
https://code.kepler-project.org/code/kepler-docs/trunk/teams-and-wg/4-interest-groups/provenance/...
ben leinfelder
09:28 AM Bug #3667 (Resolved): Mock-up Report Designer UI
The general idea is that there is a "palette" of ReportItems on the left of the screen from which a user can drag int... ben leinfelder
11:04 AM Bug #3671 (New): Configurable workspace directory for holding workflows, data, and run products
In bug 3558 I requested that a new directory be created on the user's system for each workflow run, and that outputs ... Timothy McPhillips
10:30 AM Bug #3546: Automatically load trace for a completed run into the provenance browser
I suggest the provenance browser integrated with the Kepler GUI itself, possibly as a tabbed pane in the same space a... Timothy McPhillips
10:14 AM Bug #3648: Create Report format converter
Some key considerations:
-Where are images housed and referenced in the HTML case
-Styling (CSS) for HTML needs to be...
ben leinfelder
10:06 AM Bug #3647: Create Report Assembler
Dynamic ReportItems (i.e. an actor's port) are referenced in the ROML and used to lookup the value[s] in Provenance.
...
ben leinfelder
09:58 AM Bug #3668: Define contents of "Publication Ready Archive"
Yes the reap usecase isn't specific, it requests "an archive that contains the Kepler workflow, all required inputs (... Derik Barseghian
09:41 AM Bug #3668 (New): Define contents of "Publication Ready Archive"
It's still unclear exactly what will be included (user specified?) and how it will be structured.
From past discussi...
ben leinfelder
09:22 AM Bug #3666 (Resolved): Create RIO schema
The ROML describes a report layout and items to be included - but BEFORE a workflow execution.
The RIO contains simi...
ben leinfelder
10:01 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
I agree with Tim -- this would be more aptly called a 'Workflow Run Browser' to differentiate it from the Provenance ... Matt Jones
07:38 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
We have a terminology issue here. The term 'Provenance Browser' has been applied to the graphical user interface con... Timothy McPhillips
05:28 PM Bug #3655 (New): create a Workflow Run Manager with ability to export Publication Ready Archives
Users would like to be able to create 'publication ready archives' as described here:
http://reap.ecoinformatics.org...
Derik Barseghian
05:43 PM Bug #3656 (Resolved): create a Provenance Client
Create a (non-gui) Provenance Client that can interact with Provenance stores.
Among other things, this interface...
Derik Barseghian
04:41 PM Bug #3652 (New): Ensure all Provenance Recording Types record the same things
Recording Type SQL-SPA-v8 records files referenced by string tokens and the workflow moml. This is not done by the ot... Derik Barseghian

11/12/2008

03:28 PM Bug #3649 (Resolved): determine if Provenance has everything needed by Reporting
Make sure provenance is capturing all data needed by Reporting and check that getting things back out in a form reaso... Derik Barseghian
12:34 PM Bug #3648 (Resolved): Create Report format converter
Create a report format converter that generates the .pdf and/or .html files from the Report Instance (RIO) XML. debi staggs
12:32 PM Bug #3647 (Resolved): Create Report Assembler
Create a report assembler that uses the data from Provenance to assemble a specific report instance (RIO) for a given... debi staggs
12:19 PM Bug #3646 (Resolved): Create ROML Schema
Create ROML Schema, which is the report layout specification for the Report Object Model in XML. debi staggs
12:16 PM Bug #3644: Create report layout controller
The report layout controller also generates the Report Object model debi staggs
12:12 PM Bug #3644 (Resolved): Create report layout controller
Create report layout controller that uses the ItemOfInterest model and the ReportItem model to determine the views in... debi staggs
12:13 PM Bug #3645 (Resolved): Create report layout designer
Create report layout designer which is the GUI for the user to design a report. debi staggs
12:04 PM Bug #3607: Create model for the Report Object
ReportObjectModel is referred to as ROML
ReportInstanceModel is referred to as RIO
debi staggs
12:03 PM Bug #3642 (Resolved): Create model for ReportItem
Create model for ReportItem (also see bug for ReportItem hierarchy).
A ReportItem is contained in an ItemOfInterest.
debi staggs
11:50 AM Bug #3641 (Resolved): Create model for ItemOfInterest
Create diagram and model classes required for ItemOfInterest, and ItemsOfInterest List. This is a reporting-specific... debi staggs
11:47 AM Bug #3640 (Resolved): Identify items of interest in workflow.
Create a way for the user to flag items of interest for reporting in the workflow.
Likely to be a right click contex...
debi staggs
11:45 AM Bug #3639 (Resolved): Report design features, Stage 3
Report design features to be implemented for Stage 3.
Multicolumn
User specified sizing of report items [contents].
debi staggs
11:42 AM Bug #3638 (Resolved): Report design features, Stage 2
The following report design features should be included in stage 2.
Section Headers
Pagination and page numbers
...
debi staggs
11:30 AM Bug #3637 (Resolved): Report Design Features, Stage 1
The following report design features should be included in stage 1.
Titles
Subtitles
Sections
Legends
Single s...
debi staggs
11:24 AM Bug #3636 (Resolved): Support multiple Report formats
Create support for multiple report formats including specifically the ability to display reports for print purposes a... debi staggs
11:21 AM Bug #3635: Create ReportItem Type Hierarchy
Each report item implementation should be responsible for rendering it's values. debi staggs
11:11 AM Bug #3635 (Resolved): Create ReportItem Type Hierarchy
Create a type hierarchy for Report Items. It may look something like this:
Dynamic Items
ValueItem,
StringI...
debi staggs
11:05 AM Bug #3634 (Resolved): Define the interface between Provenance and Reporting
Create a diagram and classes for the interface between Provenance and Reporting.
- Get token data for given workfl...
debi staggs
11:01 AM Bug #3633 (In Progress): New token type: By Reference / By Value
Create a new token type to handle references to files that can act as a pointer to a file (or other large data object... debi staggs
10:56 AM Bug #3632 (Resolved): TPC exceedence notification feature
Email alert and notification feature is required as part of the remote workflow execution. Specifically, it will be ... debi staggs
10:53 AM Bug #3631 (Resolved): Create diagram for Scheduler / Reporting interaction.
Create a diagram of the interactions between the workflow execution Scheduler and the Reporting engine.
- Schedule...
debi staggs
10:46 AM Bug #3630 (Resolved): Diagram Use Cases for SANPARKS specific actors.
Modify general use cases for reporting feature to specify SANPARKS actors. debi staggs

11/07/2008

12:18 PM Bug #3608: Create initial class diagrams for the reporting feature.
Specifically for the following classes:
ItemOfInterest
ReportItem
ReportLayoutController
ReportAssembler
debi staggs
12:11 PM Bug #3608 (Resolved): Create initial class diagrams for the reporting feature.
Create class diagrams for the reporting feature. debi staggs
11:56 AM Bug #3607 (Resolved): Create model for the Report Object
Create object models for the Report Object (ROML), and Report Instance (RIML). debi staggs
05:59 PM Bug #3606 (Resolved): ProvenanceRecorder config actor menus
The DB Type menu item needs to be added to the v8 menu.
Also I think the menu ordering should change to be more user...
Derik Barseghian
05:54 PM Bug #3605: problem with ProvenanceRecorder
You'll want to first change the days wf portParam to be 2 instead of 145, so it finishes more quickly. Derik Barseghian
05:51 PM Bug #3605 (Resolved): problem with ProvenanceRecorder
Seeing a new issue with ProvenanceRecorder. It seems to be occurring with both schemas v7 and v8. I've not narrowed i... Derik Barseghian

11/05/2008

02:38 PM Bug #3595 (New): Exporting an actor should prompt user to semantically annotate it if it's not already
When exporting an actor without a semantic annotation, the user is not prompted to do so. When someone then tries to ... Derik Barseghian
04:27 PM Bug #3593 (Resolved): exporting an actor to kar does not save portparameters that have been defined
If you configure an actor's portparameter by right clicking on it, and filling in the portparam's dialog, and then Ex... Derik Barseghian

10/31/2008

04:11 PM Bug #3576: support for accessing cascading metadata from within CompositeCoactor
I just committed an alternative version of CompositeCoactor that supports binding to cascading metadata (or annotatio... Timothy McPhillips

10/30/2008

01:41 PM Bug #3586 (Resolved): COMAD traces should be reproducible when there is limited concurrency
The ComadTest actor is roughly the COMAD equivalent of Ptolemy's NonStrictTest. It records the stream of data it rec... Timothy McPhillips
11:47 AM Bug #3585 (New): Provide API for creating output files during a workflow run
I suggested in bug 3558 that Kepler should create a directory on the user's system for each workflow run and store th... Timothy McPhillips

10/29/2008

11:58 AM Bug #3578 (New): optimize timing of data download by EML and other data source actors
The EML actor and some other data source actors download data when the drag and drop on the workflow canvas occurs, o... Matt Jones
05:49 PM Bug #2023: remove redundant labeling in tree
I randomly looked at this old bug and decided to close it out. Aaron Aaron
05:31 PM Bug #3542: Tree View menu is too wide when opened
A solution for this is to hard wire the width and height in the show() method of the TreeTableau Class.
//frame.pack...
Aaron Aaron
05:08 PM Bug #3242: dlls should not go in c:/Windows/System32
I think the right solution is to add the proper directory to the user's path
upon startup. Ptolemy does this in $PTI...
Christopher Brooks

10/28/2008

04:12 PM Bug #3242: dlls should not go in c:/Windows/System32
I agree that its a problem putting dll's in system32, but we've had extremely poor success trying to keep them contai... Matt Jones
03:07 PM Bug #3242: dlls should not go in c:/Windows/System32
The ant build failed for me under Windows:
BUILD FAILED
c:\tmp\cxh\src\kepler\build.xml:210: Failed to copy c:\tmp\c...
Christopher Brooks
11:36 AM Bug #3577 (New): FilterUI actor has problems
User reports Browser actors not working on Mac. I note Browser Display and BrowserUI seem to work (BrowserUI could us... Derik Barseghian

10/27/2008

03:04 PM Bug #3576 (New): support for accessing cascading metadata from within CompositeCoactor
The CompositeCoactor class extends TypedCompositeActor (and implements Coactor) to provide a mechanism for implementi... Timothy McPhillips
02:33 PM Bug #3575 (New): A representation of COMAD collections on the file-system
It would be useful if there were a representation of Collections in the file
system. In particular, I could imagine ...
Daniel Zinn
11:49 AM Bug #3574 (New): Support for importing directory contents using CollectionSource
A common workflow pattern is to take as input all of the files (or those of a particular type) in a directory on a re... Timothy McPhillips
11:32 AM Bug #3573 (New): Support for importing file contents automatically using CollectionSource
The CollectionComposer and CollectionReader actors extend CollectionSource to read XML representations of the input t... Timothy McPhillips

10/24/2008

04:48 PM Bug #3568 (New): support for writing COMAD-style trace files from the Provenance Recorder
I have heard rumors that there are plans to enable the general-purpose Provenance Recorder in Kepler to (optionally) ... Timothy McPhillips
02:09 PM Bug #3566: order collection contents displayed in provenance browser?
We have noticed this and Bertram brought this "feature request" a long time ago. It's nice to have this in this bugzi... manish manish
01:04 PM Bug #3566 (New): order collection contents displayed in provenance browser?
When the data elements inside COMAD collections are displayed in the provenance browser they seem to be arbitrarily o... Timothy McPhillips
01:18 PM Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
I am encountering this problem as well (on OSX). The scrollbars disappear when I go to full screen mode. They do not... Timothy McPhillips
01:09 PM Bug #3552: Annotation elements in trace file do not appear in details pane of provenance browser
Cool! It also would be nice somehow to distinguish annotations and metadata applied directly to the element in quest... Timothy McPhillips
 

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