Activity
From 09/26/2008 to 10/25/2008
10/24/2008
- 04:48 PM Bug #3568 (New): support for writing COMAD-style trace files from the Provenance Recorder
- I have heard rumors that there are plans to enable the general-purpose Provenance Recorder in Kepler to (optionally) ...
- 02:09 PM Bug #3566: order collection contents displayed in provenance browser?
- We have noticed this and Bertram brought this "feature request" a long time ago. It's nice to have this in this bugzi...
- 01:04 PM Bug #3566 (New): order collection contents displayed in provenance browser?
- When the data elements inside COMAD collections are displayed in the provenance browser they seem to be arbitrarily o...
- 01:18 PM Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
- I am encountering this problem as well (on OSX). The scrollbars disappear when I go to full screen mode. They do not...
- 01:09 PM Bug #3552: Annotation elements in trace file do not appear in details pane of provenance browser
- Cool! It also would be nice somehow to distinguish annotations and metadata applied directly to the element in quest...
10/23/2008
- 05:53 PM Bug #3560 (New): Color-code contents of CollectionDisplay
- The CollectionDisplay actor provides a live, XML-formatted view of the data stream arriving at the actor in a COMAD w...
- 05:38 PM Bug #3559 (New): month field in trace file name is off by one
- The name of a new run trace file comprises the name of the workflow, a timestamp, and a number distinguishing the tra...
- 04:46 PM Bug #2252: Need to add actors for aligning mulitiple DNA or protein sequences
- Actors for running ClustalW and Gblocks are included in the ppod-actors module.
- 04:33 PM Bug #3558 (New): Store each workflow run trace in it's own directory
- The ppod-gui module includes enhancements to the Kepler GUI for browsing and viewing the traces of previously run wor...
- 11:51 AM Bug #3557: Provide data dependency graph view in provenance browser
- This is a well accepted data-dependency view, and in our current dependency view, we have included "actors" to make t...
- 11:21 AM Bug #3557 (New): Provide data dependency graph view in provenance browser
- The provenance browser currently provides four views of a workflow run: the raw trace file, the "Collection History"...
- 11:43 AM Bug #3552: Annotation elements in trace file do not appear in details pane of provenance browser
- This feature has been implemented in a local version. Shawn and I are working on revised provenance model, which will...
10/22/2008
- 05:25 PM Bug #3555 (New): enhancements to Trace File view in provenance browser
- The provenance browser allows one to view the raw trace file (in XML format) of the run currently loaded in the brows...
- 03:36 PM Bug #3543: org.ecoinformatics.seek.R.RExpression
- Thanks for reporting, I broke this with my last checkin when trying to clean up hardcoded paths. R wants paths to use...
- 07:49 AM Bug #3543 (Resolved): org.ecoinformatics.seek.R.RExpression
- Actor is failing to properly generate directory name for setwd() R command. R is expecting "/" as file separators yet...
- 01:29 PM Bug #3547: CollectionReader actor throws exception when input file contains Metadata or Parameter elements
- The problem was that AnnotationSet was trying to record invocation dependencies implied by the addition of annotation...
- 10:59 AM Bug #3547 (Resolved): CollectionReader actor throws exception when input file contains Metadata or Parameter elements
- The CollectionReader actor reads in an XML representation of the input to a COMAD workflow and translates the Collect...
- 01:07 PM Bug #3552 (In Progress): Annotation elements in trace file do not appear in details pane of provenance browser
- The provenance browser shows the details for the selected data or collection element of a trace in the lower left-han...
- 10:40 AM Bug #3546 (New): Automatically load trace for a completed run into the provenance browser
- At present, viewing the trace of a workflow run via the provenance browser (the one in the provenance-apps module) re...
10/21/2008
- 04:21 PM Bug #3542 (Resolved): Tree View menu is too wide when opened
- When you go to View => Tree View, the window opens as wide as the top level's _iconDescription, which is very long. I...
10/16/2008
- 02:33 PM Bug #3539: wierd behaviors of port parameter
- workflow for testing port parameter
- 02:32 PM Bug #3539 (New): wierd behaviors of port parameter
- when put a port parameter in a composite actor, there are some wierd behaviors:
I put DDF/PN in top level and have a...
10/15/2008
- 06:11 PM Bug #3531 (New): Save As dialog inconsistent between linux and mac
- If in Kepler under linux you Save As a workflow, and give the workflow a filename with no extension, a .xml extension...
- 04:23 PM Bug #3530: Locking assertion failure
- Hauke had a similar bug, he wrote:
--start--
Running the triq/ptolemy.domains.sr.examples on linux with Java 1.6 work... - 03:46 PM Bug #3530: Locking assertion failure
- Known workaround is available.
- 03:44 PM Bug #3530 (Resolved): Locking assertion failure
- Specifically, I encountered this issue on Ubuntu version 8.04.1 (Hardy Heron) with dual displays using java 1.5
I ... - 03:17 PM Bug #3529: cannot always set parameters when running workflow from command line
- I'll take this one. Maybe MoMLSimpleApplication is not the
place for this, since it makes the application not so sim... - 11:02 AM Bug #3529 (Resolved): cannot always set parameters when running workflow from command line
- When -nogui is used, MoMLSimpleApplication loads and runs the workflow. This class does not support setting model par...
09/26/2008
- 12:32 PM Bug #3160: RBNBToKepler actors should work within SDF, PN and DDF
- DataTurbine actor works within these three domains. The way it stops (by displaying an error) when the user hits stop...
- 12:30 PM Bug #3156: RBNBToKepler actors should only download data for connected ports.
- Closing, bug 3159 has been closed.
- 12:29 PM Bug #3157: RBNBToKepler actors should support all three sink modes
- Closing, the DataTurbine actor now has this functionality.
- 12:28 PM Bug #3158: RBNBToKepler actors need to timeout more quickly
- Partially addressed by r7986, timeouts now 50% shorter (previously we were actually waiting through 2 OpenRBNBConnect...
- 12:18 PM Bug #3155: RBNBToKepler actors should allow different output formats
- Closing, bug 3159 now fixed.
- 12:16 PM Bug #3159: RBNBToKepler datasource actors should be merged into one.
- Done. The DataTurbine actor now provides all functionality.
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