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From 01/05/2010 to 02/03/2010

02/04/2010

06:58 PM Revision 5211 (metacat): Merging in REST interface implementation that was created by Serhan Akin. Main change is
a refactored MetaCatServlet.java class, in which all of the handle* methods were moved
into a separate MetacatHandler...
Matt Jones
05:03 PM Revision 5210 (metacat): Adding missing brackets in else clause. Need to verify with Daigle that this is what he meant.
Matt Jones

02/03/2010

02:35 PM Bug #4708: Handle writing a text node > 4000 characters to the db.
Moved the chunking to the DocumentImpl.writeChildNodeToDB() method Michael Daigle
01:29 PM Revision 5208 (metacat): Move the chunking of large test element data to centralized location in DBSAXNode.writeChildNodeToDB(). Beff up logging
daigle
01:16 PM Revision 5207 (metacat): Beef up log messages
daigle
01:14 PM Revision 5206 (metacat): add delay in insertSpatialDocs test to avoid buildIndex conflict
daigle
01:11 PM Revision 5205 (metacat): Add debug log statements
daigle
06:39 PM Bug #4728 (Resolved): grant document management privileges to admin user
Metacat has an administrative user, but that user only has a few capabilities. We need to enhance the privileges of ... Matt Jones

02/01/2010

09:46 AM Bug #4716 (Resolved): Metacat should run against Tomcat 6
Matt sent:
Here are the two main issues I encountered in getting Metacat to run under tomcat6.
1) servlet-api.j...
Michael Daigle

01/29/2010

04:58 PM Bug #4708 (Resolved): Handle writing a text node > 4000 characters to the db.
Right now, the postgres db can only handle a text node of 4000 characters. Currently we break calls to DBSAXNode.wri... Michael Daigle

01/28/2010

01:48 PM Bug #4707 (Resolved): Update release 1.9.2 release notes
The final change to Metacat prior to the last release candidate should be to update the release notes. Michael Daigle
12:35 PM Revision 5204 (metacat): make sure querygroup is not null before trying to print it.
daigle

01/27/2010

10:17 AM Revision 5203 (metacat): Re-add the build dir property so the lsid server can build
daigle
09:51 AM Revision 5202 (metacat): Populate esa home links with skin property value
daigle
09:49 AM Bug #4698: ESA skin links are hard coded to data.esa.org
templates look good Michael Daigle
09:47 AM Bug #4698: ESA skin links are hard coded to data.esa.org
Updated the JSP pages to use the skin registryurl property. Need to look at the registry templates now Michael Daigle
09:45 AM Bug #4698 (Resolved): ESA skin links are hard coded to data.esa.org
The "ESA Registry" and "Search for Data" links in the ESA header are hard coded to go to data.esa.org. This causes i... Michael Daigle

01/26/2010

03:53 PM Bug #4573: LDAP and Register CGIs reference skin-specific templates in the common area
Differing to 1.9.3 Michael Daigle
03:52 PM Bug #4627: [ESA] Update fails when document rev number is missing
Resolved Michael Daigle
03:52 PM Bug #4627: [ESA] Update fails when document rev number is missing
Updated the registry code to recognize when the docid for a modify action does not have a revision. In that case, ge... Michael Daigle
03:50 PM Revision 5201 (metacat): Get the latest revision from metacat when a modify call docid does not have a revision number.
daigle

01/25/2010

03:46 PM Bug #4356: knb website query result shows old version of a document
We need to add code to retry (queue) the query result addition when it fails. differing this to 1.9.3 Michael Daigle
03:13 PM Bug #4658: metacat runs out of memory
Differing to release 1.9.3. We have made several performance improvements in 1.9.2, and we need to see if those reso... Michael Daigle
03:09 PM Bug #4649: Metacat couldn't update a document from client, which previous versions only stay in xml_revisions table
resolved Michael Daigle
03:09 PM Bug #4649: Metacat couldn't update a document from client, which previous versions only stay in xml_revisions table
Updated the code to return a more meaningful message ... that the document had been deleted and cannot be updated. Michael Daigle
03:02 PM Revision 5200 (metacat): Send appropriate message when trying to update a docid that was previously deleted.
daigle

01/22/2010

10:06 AM Revision 5199 (metacat): Reformat file. No code change.
daigle

01/21/2010

03:12 PM Bug #4690: register-dataset.cgi should have its permissions set
The initial error thrown by Apache:
(13)Permission denied: exec of '/var/www/edu.ucsb.nceas.dev/knb/cgi-bin/register...
Shaun Walbridge
02:23 PM Bug #4690 (Closed): register-dataset.cgi should have its permissions set
Currently, the registry script does not get the execute bit set when deployed from a WAR file -- either we should fix... Shaun Walbridge
03:02 PM Revision 5198 (metacat): do a quick retry if building path index fails with a SQL error
daigle
02:25 PM Bug #4691 (Resolved): Registry mixes up users when saving
If different users are added for the data set owner and contact, the registry messes up the serialization and takes d... Shaun Walbridge

01/20/2010

03:24 PM Bug #4442: Spatial indexing should not run and block metacat
moving to 1.9.3 target Michael Daigle
03:23 PM Bug #4651: data packages losing data tables (and then finding them again)
Moving to 1.9.3 target since this is on dev, and will take some time to research. Michael Daigle
03:16 PM Bug #4367: metacat didn't update xml_path_index table while a document was updated
It looks like this is a race condition. The xml_nodes insertion commit must still be going on when the indexing kick... Michael Daigle
11:24 AM Bug #4367: metacat didn't update xml_path_index table while a document was updated
Hmm, there is also a foreign key constraint violation. Inserting into xml_index violates a constraint on xml_nodes.n... Michael Daigle
10:52 AM Bug #4367: metacat didn't update xml_path_index table while a document was updated
Forcing index via the API causes a StringIndexOutOfBoundsException when processing spatial coordinates. See bug 4680... Michael Daigle
02:55 PM Revision 5197 (metacat): Make sure buildIndex throws an exception if it has a sqlexception. That way the indexing object will be added to the indexing queue and reprocessed.
daigle
10:46 AM Bug #4680 (Resolved): Geoserver StringIndexOutOfBoundsException
Geoserver is throwing many StringIndexOutOfBoundsExceptions. There is a geoserver bug listed against version 2.4.4 t... Michael Daigle
04:26 PM Bug #4641: must support java 1.6
resolved Michael Daigle
04:26 PM Bug #4641: must support java 1.6
Updated release notes and Metacat Administrators Guide. Note that the pdf version of the guide does not have active ... Michael Daigle
04:23 PM Revision 5196 (metacat): PDF version of doc
daigle

01/19/2010

10:32 AM Bug #4616: Timed Replication takes many hours and drives the load up on KNB
After raising the log level on KNB to INFO and tracing through the logs, it was clear that the delay was happening wh... Michael Daigle
10:25 AM Revision 5195 (metacat): Pass the doc xml as a string to docImpl.write and writeRepication. This is so a reader can be create for the parsing and for the write to disk. Also created a db access class for xml query result deletion.
daigle

01/15/2010

11:07 AM Bug #4676 (New): registry did not let me see my data table, although permissions are set
I was demonstrating the knb dataset registry, and put in a test dataset (knb.230).
We logged in (as uid=mobrien,o=LT...
Margaret O'Brien

01/13/2010

02:18 PM Bug #4367: metacat didn't update xml_path_index table while a document was updated
I should test this by reindexing doc via api and looking for errors Michael Daigle
11:16 AM Revision 5194 (metacat): Update java version references to java 6
daigle
10:56 AM Revision 5193 (metacat): Remove redundant Version information
daigle
10:55 AM Revision 5192 (metacat): Add 1.9.2 release notes.
daigle
09:26 AM Bug #4645: handleGetRevisionAndDocTypeAction should search both xml_documents and xml_revisions table
now, it can search both xml_documents and xml_revisions. Jing Tao

01/12/2010

01:30 PM Revision 5191 (metacat): Fixed typo in docs.
Matt Jones
01:02 PM Revision 5190 (metacat): Updated index page to hide obsolete documentation and provide a simpler
description of Metacati, as well as links to where Metacat is in use. Matt Jones

01/11/2010

03:48 PM Bug #4367: metacat didn't update xml_path_index table while a document was updated
So far I haven't been able to reproduce this with the dev skin or morpho. Michael Daigle
02:25 PM Bug #4367: metacat didn't update xml_path_index table while a document was updated
I haven't been able to reproduce this using the dev skin in metacat. I'll try using morpho. Michael Daigle
10:33 AM Bug #4641: must support java 1.6
I do not think we should require 1.6 at this point, as many people have existing 1.5 JVM installations on production ... Matt Jones
10:02 AM Bug #4641: must support java 1.6
I can see arguments both ways. However, I would probably lean toward making 1.6 a requirement for a few reasons:
--...
Michael Daigle
09:54 AM Bug #4641: must support java 1.6
I don't think we should yet _require_ 1.6. It's great that it runs under it, however. ben leinfelder
09:52 AM Bug #4641: must support java 1.6
Metacat has been unit tested as:
-- Built using 1.6 and run in 1.6
-- Build using 1.5 and run in 1.6
I need to know...
Michael Daigle
09:57 AM Bug #4556: Fix cross platform TPC GUI issues
Converted tpc pages to table layout which works across IE7, 8 and firefox. Michael Daigle
09:56 AM Bug #4557: TPC Sanparks page content lenth issue
The new table layout handles this length issue. Michael Daigle
08:54 AM Revision 5189 (metacat): Add comments
daigle
08:54 AM Revision 5188 (metacat): make constants final
daigle

01/09/2010

04:13 PM Bug #4658 (Resolved): metacat runs out of memory
I parsed an EML 201 doc from:
http://knb.ecoinformatics.org/emlparser/parse
I got a java error to the effect that...
Margaret O'Brien

01/07/2010

01:46 PM Bug #4651 (Resolved): data packages losing data tables (and then finding them again)
This is on the dev server. I created soong.4 for the Kruger TPCs. soong.4.14 references four data tables containing... Oliver Soong
01:37 PM Revision 5187 (metacat): change dropdown select event to work on IE.
daigle
04:18 PM Revision 5186 (metacat): Fix the bug of http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4645. handleGetRevisionAndDocTypeAction will search both xml_documents and xml_revisions table.
It also changed some constrain in AccessionNumber when user update a document, of which all previous versions are in ... Jing Tao

01/06/2010

03:06 PM Bug #4649 (Resolved): Metacat couldn't update a document from client, which previous versions only stay in xml_revisions table
Metacat has document tao.14334.2 and tao.14334.1. However they all were deleted. That means they stay in xml_revision... Jing Tao
02:05 PM Revision 5185 (metacat): Fix main cross browser gui compatibility issues in sanparks tpc skin.
daigle
02:05 PM Revision 5184 (metacat): Fix main cross browser gui compatibility issues in sanparks tpc skin.
daigle
02:03 PM Revision 5183 (metacat): Remove commas from the end of lists because they break IE
daigle
11:41 AM Revision 5182 (metacat): remove the "optional" tip since it is not currently optional
ben leinfelder
11:39 AM Revision 5181 (metacat): add required authentication exception class so that the scheduler can compile
ben leinfelder
11:38 AM Revision 5180 (metacat): add properties expected by the DB property service
ben leinfelder
11:37 AM Revision 5179 (metacat): use workflowscheduler DB
ben leinfelder
04:07 PM Revision 5178 (metacat): use @class attribute for path queries rather than @name
ben leinfelder

01/05/2010

02:08 PM Revision 5177 (metacat): Add a sleep statement between getting the dtd from source and checking for it via url. Add method names to log output.
daigle
 

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