Project

General

Profile

Activity

From 09/05/2013 to 10/04/2013

10/05/2013

05:32 PM Story #6128 (Closed): Wait for MetacatUI 1.1.0 release
ben leinfelder

10/04/2013

11:39 AM Bug #6123 (Rejected): Rework on the IndexGenerator class in the metacat-index module
The IndexGenerator class has two purpose - first, to create the solr index for all data objects for a Metacat which i... Jing Tao
11:20 AM Bug #6122: Metacat-index can't index taxon information
This will be fixed by adopting d1_cn_index_processor 1.2 in the 2.2.1 release. Jing Tao
05:47 PM Bug #6122: Metacat-index can't index taxon information
I committed those files to the trunk and it works. I haven't committed to the 2.2.0 branch. Jing Tao
05:46 PM Bug #6122 (Resolved): Metacat-index can't index taxon information
With the help of Skye, we patched 5 files: application-context-eml-base.xml, application-context-eml201.xml, applicat... Jing Tao
09:54 PM Bug #6117 (Resolved): Reindexing (action=reindex) only works once
I installed a metacat from the 2.2.0 branch. It works very well for the reindex action.
I also deleted the solr in...
Jing Tao

10/03/2013

12:46 PM Bug #6117 (In Progress): Reindexing (action=reindex) only works once
Added code to remove from the queue when responding to the add event. Testing now. ben leinfelder
12:39 PM Bug #6117 (Resolved): Reindexing (action=reindex) only works once
ben leinfelder
12:17 PM Task #6040: Metacat-index does not handle <references>
Spaces aren't really sufficient as a solution, and there are a lot of references fields in EML. We probably need to ... Matt Jones
12:01 PM Task #6040: Metacat-index does not handle <references>
This is included in the 1.2.0 d1 index release. It will not include || but instead will use blanks. Not a very great ... ben leinfelder
11:07 AM Task #6040: Metacat-index does not handle <references>
Apparently this is fixed in cn-index-processor v1.2.0 -- so we will need to pull in this newer dependency in metacat-... ben leinfelder
11:59 AM Task #6110: Use a new schema of dataone solr index so that the author last name can be sortable
This is included in the v1.2.0 release of d1 indexing -- called "authorSurNameSort"
Schema:
https://repository.da...
ben leinfelder
11:47 AM Feature #6031 (Rejected): Add rendered metadata to Bagit package contents
Duplicate of 6053 ben leinfelder

10/02/2013

11:41 AM Story #6062 (Closed): Deprecate skin configuration
ben leinfelder
11:40 AM Task #6067 (Closed): Update documentation to reflect the new metacatui theme mechanism
ben leinfelder
11:36 AM Bug #5243: ldapweb.cgi crashes with invalid password characters
move it to 2.2.1 Jing Tao
10:58 AM Bug #5243: ldapweb.cgi crashes with invalid password characters
I agree to add guidelines for users. Jing Tao
10:55 AM Bug #5243: ldapweb.cgi crashes with invalid password characters
While we do allow someone to create an account with special characters as the password, I am unable to login using th... ben leinfelder
11:12 AM Story #6063 (Closed): ldapweb.cgi enhancements
ben leinfelder
10:50 AM Task #6113 (Resolved): Getting "Bad header" error when similar accounts are present
the new installation fixed the issue. Jing Tao
05:59 PM Task #6113: Getting "Bad header" error when similar accounts are present
i installed a new metacat with the trunk code. The ldap server points to ldap-dev. It works great with similar accou... Jing Tao
05:08 PM Task #6113 (Resolved): Getting "Bad header" error when similar accounts are present
WHen I try to register with an account that has similar info as an existing one (email, last name etc) on dev2.nceas.... ben leinfelder
10:24 AM Task #6115 (Resolved): ldapweb.cgi - default configuration should use o=unaffiliated
I change the configuration in the metacat.properties and nceas.properties. The default value now is unaffiliated. Jing Tao
09:48 AM Task #6115 (Resolved): ldapweb.cgi - default configuration should use o=unaffiliated
We are not yet ready to use ou=Account by default in our ldapweb skin configurations. ben leinfelder
09:46 AM Bug #6086 (Closed): publish service call fails to authenticate properly
ben leinfelder
09:23 AM Story #6114 (Closed): Include updated D1 indexing library
ben leinfelder

10/01/2013

04:59 PM Task #6096 (Closed): Add reCaptcha library instructions to admin docs
Added to the registry installation section. ben leinfelder
04:22 PM Task #6110 (Resolved): Use a new schema of dataone solr index so that the author last name can be sortable
Ben said skye developed a new schema of the dataone solr index so that the author last name can be sortable. We need ... Jing Tao
04:09 PM Feature #6109 (Closed): Keep the SOLR index for obsoleted objects
Currently, metacat only keeps the solr index for the current objects. The solr index for the obsoleted objects are re... Jing Tao
01:27 PM Feature #6107 (Rejected): Make publication year in search results less prominent
Should have put this in MetacatUI project Lauren Walker

09/30/2013

02:25 PM Feature #6107 (Rejected): Make publication year in search results less prominent
Move to the end of the citation line and preface with "Published:" Lauren Walker

09/24/2013

04:34 PM Bug #6101 (Closed): MN.update() fails but modifies revision chain
Moved the call "existingSysMeta.setObsoletedBy(newPid);" to after the insert/update in Metacat is called.
ben leinfelder
04:09 PM Bug #6101 (Closed): MN.update() fails but modifies revision chain
Hello Ben, Chris,

I was trying to update two data and metadata files for some old subtidal data today and ran int...
ben leinfelder

09/23/2013

04:36 PM Story #6082 (Closed): Rename knb.war to ???.war
Using metacat.war now. ben leinfelder
04:35 PM Task #6087 (Closed): Change all default configurations to use new context
ben leinfelder
04:34 PM Task #6088 (Closed): Update documentation to use new context name
ben leinfelder
01:21 PM Bug #6100 (Closed): Metacat search does not work for Chinese characters
Now forcing UTF-8 if the request does not specify and encoding. ben leinfelder
10:33 AM Bug #6100 (Closed): Metacat search does not work for Chinese characters
Hi Ben,
We found there is a searching problem on Metacat Home page. We can search Chinese characters correctly on ...
ben leinfelder
12:03 PM Task #6067 (Feedback): Update documentation to reflect the new metacatui theme mechanism
Lauren Walker
11:51 AM Feature #6080 (Closed): Update Metacat admin screen using cues from the new default look and feel
Went through a review and it looks complete. Lauren Walker
11:50 AM Bug #6094 (Closed): Replace all screenshot images in the documentation with screenshots of the new documentation style
Added new screenshot images. Lauren Walker
10:30 AM Task #6066 (Closed): Add email verification for new accounts
I made the activation link accessible via a configured #external url in the metacatui.properties file. This let's us ... ben leinfelder

09/20/2013

11:20 AM Task #6066 (In Progress): Add email verification for new accounts
This working great - only issue is that using the metacatui cfg we get an un-styled "Activation Successful!" page. Th... ben leinfelder
11:06 AM Task #6065 (Closed): Add reCaptcha widget to initial registration page
ben leinfelder
10:59 AM Task #6098 (Closed): Make reCaptcha work with AJAX include
Works as expected now. ben leinfelder
08:33 AM Task #6098: Make reCaptcha work with AJAX include
This is now rendering on dev2. I did not know the private key for our recaptcha config, so it needs to be tested when... ben leinfelder
07:50 AM Task #6098: Make reCaptcha work with AJAX include
I included the ajax-style of recaptcha, but need to verify that it works. Jing - do you foresee any issues with using... ben leinfelder
07:45 AM Task #6098 (Closed): Make reCaptcha work with AJAX include
Instead of having the perl code generate the catcha content, the template can include the ajax-style of constructing ... ben leinfelder
10:47 AM Feature #6099 (Closed): Remove temporary LDAP accounts after X amount of time has passed
Users are added to a temporary LDAP tree until they activate their account via email. We should remove these accounts... ben leinfelder
10:44 AM Task #3306 (Closed): NCEAS skin account creation needs more thought
We've now made the text more generic so that the LDAP account creation feature can be used in multiple contexts and i... ben leinfelder
10:40 AM Task #2635 (Closed): Look up for forgotten KNB account names
This is working nicely. ben leinfelder

09/19/2013

12:38 PM Task #6096 (Closed): Add reCaptcha library instructions to admin docs
THis is a new dependency and should be documented in the registry install docs. ben leinfelder
11:39 AM Story #6082: Rename knb.war to ???.war
[11:34am] matt: ben: the more I think about it, I still think we should go with metacat.war, despite the duplicate pa... ben leinfelder

09/18/2013

03:50 PM Task #6095 (Closed): Pull metacatui from specific tag
added to build, but still pointing to 'master' for the time being. ben leinfelder
03:17 PM Task #6095 (Closed): Pull metacatui from specific tag
Right now it is pulling the HEAD for the build. Should pull a specific tag. ben leinfelder
09:04 AM Bug #6094 (Closed): Replace all screenshot images in the documentation with screenshots of the new documentation style
Lauren Walker

09/17/2013

04:19 PM Feature #6080 (Feedback): Update Metacat admin screen using cues from the new default look and feel
"wow" factor has been upped. :)
Pulled in more styling from the metacatUI default theme so the config pages have a...
Lauren Walker
10:40 AM Feature #6080 (In Progress): Update Metacat admin screen using cues from the new default look and feel
Via Ben, I'm upping the 'wow' factor Lauren Walker
09:35 AM Feature #6092 (Closed): Science Metadata DOIs should point to "view" landing page
Added two optional entries in metacat.properties for including a template for the view landing page:... ben leinfelder

09/16/2013

04:34 PM Bug #6086 (Feedback): publish service call fails to authenticate properly
Now requiring authentication (session) to generate an identifier. Not reserving it with the CN at this point. ben leinfelder
03:49 PM Bug #6086: publish service call fails to authenticate properly
Added the dataone.subject to the list of metacat admins. This identity will enjoy the perks of being an admin when ac... ben leinfelder
02:34 PM Bug #6086: publish service call fails to authenticate properly
Part of the issue was not running under SSL. Fixing that, the correct update() command would be:... Matt Jones
01:42 PM Feature #6080 (Closed): Update Metacat admin screen using cues from the new default look and feel
Configuration pages have new CSS and the HTML was updated a bit so it now fits in with the default metacatUI theme. Lauren Walker
11:14 AM Feature #6092 (Closed): Science Metadata DOIs should point to "view" landing page
We'll use a configurable template for the URI in metacat.properties that will allow us flexibility in determining wha... ben leinfelder

09/13/2013

03:58 PM Bug #6061 (Closed): Ensure that all packages from metacat API have resource map
Now generating OREs when Metacat API is used to insert science metadata.
Also added a better check for existing OR...
ben leinfelder

09/12/2013

11:25 AM Feature #6075 (Closed): Modify Metacat admin documentation so that it uses the chosen theme in the browser
It won't be possible to view the docs in a theme before configuration, so I created a new Sphinx theme to mirror the ... Lauren Walker
10:48 AM Feature #6089 (Closed): Remove index_event record when reindex is successful
Now calling the event log remove() method for all successful reindex attempts. ben leinfelder
10:43 AM Feature #6089 (In Progress): Remove index_event record when reindex is successful
I think this will be useful, especially for cases like what Mike Frenock is experiencing - manually reindexing items ... ben leinfelder

09/11/2013

10:13 AM Feature #6089 (Closed): Remove index_event record when reindex is successful
If manually reindexing a pid that had an error, we should remove the record (if it exists) from the index_event table... ben leinfelder

09/10/2013

04:19 PM Bug #2646 (Closed): allow eml to specify any valid user as access constraint
This is supported in DataONE using the access rule conventions specified there, notably, "authenticatedUser"
http:...
ben leinfelder
04:16 PM Bug #129 (Closed): Metacat Performance: paged Query Returns
Now using SOLR as the search mechanism which absolutely supports paged results. ben leinfelder
03:49 PM Task #2635: Look up for forgotten KNB account names
Might consider this feature to be added to the ldapweb.cgi while it is being extended. ben leinfelder
03:46 PM Bug #1311 (Closed): Registry: Links should open in a new window and windows should move to front
This is no longer and issue with the guide because we are using it inside the metacatui pulled into a modal "help" ov... ben leinfelder
03:43 PM Bug #5243: ldapweb.cgi crashes with invalid password characters
Jing - would be great if we can check for some special characters and fail gracefully if their password uses ones tha... ben leinfelder
03:40 PM Bug #3761 (Closed): Add ability for admin user to log out
added action=logout link to header and footer ben leinfelder
03:34 PM Task #3306: NCEAS skin account creation needs more thought
When working on the LDAP web interface, we should keep this in mind -- the templates should be as generic as possible... ben leinfelder
03:31 PM Bug #3395 (Closed): allow private access via indexed "shortcut" url
This is essentially supported by the D1 REST service now - both using client certs or JSESSIONID cookies. ben leinfelder
03:29 PM Bug #4085 (Rejected): The session couldn't be kept after login through devtools.html
now using JSESSIONID cookies when you leave the sessionid off the query string ben leinfelder
03:25 PM Bug #3021 (Rejected): ldapweb.cgi needs some usability improvements
Actually, login is handled by the registry, not ldapweb.cgi. Redirects would be nice, but it is possible to "trick" i... ben leinfelder
03:20 PM Bug #5647 (Closed): Lack of access rights for "previous" datafile prevent saving
Now checking the current and the previous revisions - if either allows updates, then the action proceeds successfully... ben leinfelder

09/09/2013

03:34 PM Bug #5647: Lack of access rights for "previous" datafile prevent saving
Sarah Clark has also seen this behavior, but in a slightly different scenario. Instead of an any EML parsing error, t... ben leinfelder
03:30 PM Bug #6054 (Closed): dataPackage.xxxx.zip BagIt package is unzipped as "bag"
ben leinfelder
03:30 PM Story #6064 (Closed): Metacat bundle packaging
ben leinfelder
03:28 PM Task #6088 (Closed): Update documentation to use new context name
ben leinfelder
03:26 PM Task #6087 (Closed): Change all default configurations to use new context
ben leinfelder
03:11 PM Bug #6086: publish service call fails to authenticate properly
I should also mention that you should not call publish() on the KNB until Metacat 2.1.1 is installed since there is a... ben leinfelder
08:22 AM Bug #6086 (In Progress): publish service call fails to authenticate properly
Well, for the first issue, you cannot expect a client certificate to work if you aren't using https. If the URL in th... ben leinfelder
03:07 PM Task #6081 (Closed): Build metacatui.war in Metacat bundle
ben leinfelder
03:05 PM Task #6069 (Closed): Pull metacatui from public Git repo into Metacat
ben leinfelder

09/06/2013

04:45 PM Bug #6086 (Closed): publish service call fails to authenticate properly
I was trying to issue a DOI for Sarah Olson's data set tonight via curl on the KNB using the KNB node certificate as ... Matt Jones
02:26 PM Bug #6085 (Closed): SQL error when inserting EML beta2 access document
ben leinfelder
02:23 PM Bug #6085 (Closed): SQL error when inserting EML beta2 access document
I was showing Lauren how to use the perl lib to transfer test content from one Metacat to her localhost and we got th... ben leinfelder
12:46 PM Bug #5812 (Closed): Rework default skin[s] to use SOLR query
This has been superseded by metacatUI work. ben leinfelder
12:45 PM Feature #6075: Modify Metacat admin documentation so that it uses the chosen theme in the browser
This strongly overlaps with the task in metacatUI. Both projects may need to be modified to fully support this. ben leinfelder
10:07 AM Feature #6075 (Closed): Modify Metacat admin documentation so that it uses the chosen theme in the browser
Lauren Walker
12:41 PM Story #6082 (Closed): Rename knb.war to ???.war
Possible names (please add more suggestions):
-metacat.war (would make <hostname>/metacat/metacat for the Metacat se...
ben leinfelder
12:38 PM Story #6064: Metacat bundle packaging
Tracking for potential modifications to the binary distribution of Metacat to include:
server (knb.war)
indexing (...
ben leinfelder
12:36 PM Task #6081 (Closed): Build metacatui.war in Metacat bundle
ben leinfelder
12:35 PM Task #6068 (Closed): Update Metacat skin admin screen
Added note to the skin configuration screen and made the screen configured by default for an initial deployment of kn... ben leinfelder
05:00 PM Task #6068 (Closed): Update Metacat skin admin screen
It should have a note about the new metacatUI method and should be marked as already configured (default) so that no ... ben leinfelder
11:59 AM Feature #6080: Update Metacat admin screen using cues from the new default look and feel
Talked this over with Lauren and we think it will be relatively quick to apply the new default look and feel to the a... ben leinfelder
11:57 AM Feature #6080 (Closed): Update Metacat admin screen using cues from the new default look and feel
The header and footer sections will not have the same exact links as the default theme because this is targeting admi... ben leinfelder
10:21 AM Feature #6077 (Rejected): Include new instructions for modifying themes in the Metacat admin documentation
Lauren Walker
10:08 AM Feature #6077 (Rejected): Include new instructions for modifying themes in the Metacat admin documentation
Lauren Walker
05:11 PM Task #6069 (Closed): Pull metacatui from public Git repo into Metacat
Since the original nceas staff repo for datadepot is protected (even for reading) we need to push the release tags to... ben leinfelder

09/05/2013

04:45 PM Task #6067 (Closed): Update documentation to reflect the new metacatui theme mechanism
ben leinfelder
04:43 PM Task #6066 (Closed): Add email verification for new accounts
We should send a temporary link to activate an account using on a randomly-generated key for their provisional accoun... ben leinfelder
04:38 PM Task #6065 (Closed): Add reCaptcha widget to initial registration page
ben leinfelder
04:34 PM Story #6064 (Closed): Metacat bundle packaging
ben leinfelder
04:33 PM Story #6063 (Closed): ldapweb.cgi enhancements
ben leinfelder
04:32 PM Story #6062 (Closed): Deprecate skin configuration
ben leinfelder
 

Also available in: Atom