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From 09/11/2013 to 10/10/2013

10/10/2013

01:01 PM Revision 8307 (metacat): prep project for 2.2.1 patch release -- will also merge to the 2.2.x branch.
ben leinfelder
12:43 PM Bug #6136: files left open causes too many file descriptors on OS
A brief overview of how I was inspecting memory, threads, file descriptors, etc. while stress testing Metacat. This ... Matt Jones
11:57 PM Bug #6136: files left open causes too many file descriptors on OS
Checked all instances of FileInputReader and ensured that close() was being called properly. See commit r8304.
Matt Jones
12:27 PM Revision 8306 (metacat): correctly configure metacat-index to use metacat context/deployment location. https://projects.ecoinformatics.org/ecoinfo/issues/6138
ben leinfelder
12:12 PM Bug #6138 (Closed): Metacat-index assumes default "knb" context
ben leinfelder
09:39 AM Task #6040: Metacat-index does not handle <references>
Even with a SAX parser, the implementation could keep track of all elements with "id" attributes and anytime a "refer... ben leinfelder
09:36 AM Task #6040: Metacat-index does not handle <references>
Skye said that the sax parser is used to parse those information. This change may require to use DOM parser. It is a... Jing Tao
09:37 AM Bug #6137 (Resolved): Add a new action reindexall to reindex all the solr index
Just leave as it is. Jing Tao
10:03 PM Bug #6137: Add a new action reindexall to reindex all the solr index
I read this message after i committed the change :)
I still think we should give an expensive process a dedicated ...
Jing Tao
09:33 AM Task #6110 (Resolved): Use a new schema of dataone solr index so that the author last name can be sortable
Skype released a "buildout" component DATAONE-CN-INDEX_v1.2.1. It only has the schema change. Now our schema is using... Jing Tao
09:20 AM Revision 8305 (metacat): Change the svn location of the schema.xml file to d1_cn_index_processor 1.2.1. The 1.2.1 release is a "buildout" release. There was no code change.
Skye change the attribute "stored" to be true for the authorSurNameSort and authorGivenNameSort. Otherwise the sortin... Jing Tao
11:52 PM Revision 8304 (metacat): Reviewed code for all uses of FileInputStream, checking to see if the method should be closing the stream, and if so, closing it in the method as well as in the finally clause to ensure we don't leak file descriptors.
Matt Jones
08:53 PM Revision 8303 (metacat): Sparate the action reindex and reindexall.
Jing Tao
05:49 PM Revision 8302 (metacat): The checked-out schema.xml will overwrite the one in src/main/resource/solr-home/conf.
Jing Tao

10/09/2013

04:52 PM Bug #6137: Add a new action reindexall to reindex all the solr index
I think this would be redundant and it would be better to just leave it as is, and have administrators use care. The... Matt Jones
04:14 PM Bug #6137 (Resolved): Add a new action reindexall to reindex all the solr index
Currently we have an action named reindex. If the action has a parameter pid, it will reindex the solr index of the s... Jing Tao
04:02 PM Story #6114: Include updated D1 indexing library
After changing the version depency on the metacat-index pom.xml and some code change, the new version works.
Ther...
Jing Tao
03:27 PM Task #6110: Use a new schema of dataone solr index so that the author last name can be sortable
Won't this be included in the next (1.2.1) release of the library as well? Could just wait for that if it is coming u... ben leinfelder
03:23 PM Task #6110: Use a new schema of dataone solr index so that the author last name can be sortable
After adopting the d1_cn_index_processor 1.2.0, the authorSurNameSort field is sortable. But it doesn't work very wel... Jing Tao
03:20 PM Feature #6109 (Resolved): Keep the SOLR index for obsoleted objects
Removed the code which excluded the obsoleted objects from indexing. Next release, we need to notice the metacat owne... Jing Tao
03:17 PM Bug #6122 (Resolved): Metacat-index can't index taxon information
Adopted d1_cn_index_processor 1.2.0 into metacat. The new version processor can index taxon information. Jing Tao
03:05 PM Bug #6136: files left open causes too many file descriptors on OS
After looking into this, its not just file handles that are left open, but many InputStream and OutputStream instance... Matt Jones
01:53 PM Bug #6136: files left open causes too many file descriptors on OS
Switched to using IOUtils.closeQuietly() which handles nulls and already closed file handles in r8299. Matt Jones
01:28 PM Bug #6136: files left open causes too many file descriptors on OS
Also added a close() to the finally block in DocumentImpl.readFromFileSystem() in r8298. This is probably not causin... Matt Jones
01:05 PM Bug #6136: files left open causes too many file descriptors on OS
Closed file handles in DocumentImpl and ReplicationService in commit r8297. Matt Jones
01:03 PM Bug #6136 (Closed): files left open causes too many file descriptors on OS
Metacat writes temp files to disk, and in the process has been failing to close file handles. Over time, especially ... Matt Jones
02:42 PM Revision 8301 (metacat): Closing some more streams that were left open. This Bug #6136 seems to be pervasive and is going to require an extensive audit to find all of the places where streams are not closed properly.
Matt Jones
01:52 PM Revision 8300 (metacat): Adding build files to ignore.
Matt Jones
01:47 PM Revision 8299 (metacat): Refactor to use IOUtils.closeQuietly() which handles nulls and streams that are already closed.
Matt Jones
01:26 PM Revision 8298 (metacat): Added close() to finally block for readFromFileSystem() call.
Matt Jones
12:44 PM Revision 8297 (metacat): Closing FileOutputStream handles so that the OS limits on filehandles are not exceeded.
Matt Jones
12:10 PM Revision 8296 (metacat): Use the d1_cn_index_processor 1.2.0 version.
Jing Tao
12:09 PM Revision 8295 (metacat): Remove those files. They will be get from the d1_cn_index_processor 1.2.0 jar.
Jing Tao
12:07 PM Revision 8294 (metacat): Use the schema for the d1_cn_index_processor 1.2.0
Jing Tao
05:51 PM Revision 8293 (metacat): combine the index code for failed ids and other ids.
Jing Tao

10/08/2013

04:49 PM Revision 8292 (metacat): Clean up the code.
Jing Tao
02:22 PM Revision 8291 (metacat): The IndexGenerator will index the obsoleted data objects as well.
Jing Tao
12:05 PM Revision 8290 (metacat): add sample SSLCertificateChainFile directive to DataONE section.
ben leinfelder
12:04 PM Revision 8289 (metacat): add sample SSLCertificateChainFile directive to DataONE section.
ben leinfelder
11:33 AM Revision 8288 (metacat): Remove the obsoletes chain from the update method in the SolrIndex class.
Jing Tao
05:56 PM Revision 8287 (metacat): When an object is archvied, the solr index will not be removed.
Jing Tao

10/07/2013

04:09 PM Story #6128 (Closed): Wait for MetacatUI 1.1.0 release
Using MetacatUI 1.1.0 tag.
https://github.com/NCEAS/metacatui/tree/METACATUI_1_1_0
ben leinfelder

10/05/2013

05:32 PM Story #6128 (Closed): Wait for MetacatUI 1.1.0 release
ben leinfelder

10/04/2013

11:39 AM Bug #6123 (Rejected): Rework on the IndexGenerator class in the metacat-index module
The IndexGenerator class has two purpose - first, to create the solr index for all data objects for a Metacat which i... Jing Tao
11:20 AM Bug #6122: Metacat-index can't index taxon information
This will be fixed by adopting d1_cn_index_processor 1.2 in the 2.2.1 release. Jing Tao
05:47 PM Bug #6122: Metacat-index can't index taxon information
I committed those files to the trunk and it works. I haven't committed to the 2.2.0 branch. Jing Tao
05:46 PM Bug #6122 (Resolved): Metacat-index can't index taxon information
With the help of Skye, we patched 5 files: application-context-eml-base.xml, application-context-eml201.xml, applicat... Jing Tao
09:26 AM Revision 8283 (metacat): merge from 2.2 branch: remove the index queue item when it is being processed. https://projects.ecoinformatics.org/ecoinfo/issues/6117
ben leinfelder
09:54 PM Bug #6117 (Resolved): Reindexing (action=reindex) only works once
I installed a metacat from the 2.2.0 branch. It works very well for the reindex action.
I also deleted the solr in...
Jing Tao
05:38 PM Revision 8282 (metacat): Add a patch for d1_cn_index_processor 1.1.2 version. So it can index taxon information.
Those files will overwrite the ones in the d1_cn_index_process-1.1.2.jar. Jing Tao

10/03/2013

12:46 PM Bug #6117 (In Progress): Reindexing (action=reindex) only works once
Added code to remove from the queue when responding to the add event. Testing now. ben leinfelder
12:39 PM Bug #6117 (Resolved): Reindexing (action=reindex) only works once
ben leinfelder
12:17 PM Task #6040: Metacat-index does not handle <references>
Spaces aren't really sufficient as a solution, and there are a lot of references fields in EML. We probably need to ... Matt Jones
12:01 PM Task #6040: Metacat-index does not handle <references>
This is included in the 1.2.0 d1 index release. It will not include || but instead will use blanks. Not a very great ... ben leinfelder
11:07 AM Task #6040: Metacat-index does not handle <references>
Apparently this is fixed in cn-index-processor v1.2.0 -- so we will need to pull in this newer dependency in metacat-... ben leinfelder
11:59 AM Task #6110: Use a new schema of dataone solr index so that the author last name can be sortable
This is included in the v1.2.0 release of d1 indexing -- called "authorSurNameSort"
Schema:
https://repository.da...
ben leinfelder
11:47 AM Feature #6031 (Rejected): Add rendered metadata to Bagit package contents
Duplicate of 6053 ben leinfelder
05:55 PM Revision 8279 (metacat): Fixed a bug that the code copied the solr-home to the target directory before it checked out the schema from the dataone svn repository.
Jing Tao

10/02/2013

11:41 AM Story #6062 (Closed): Deprecate skin configuration
ben leinfelder
11:40 AM Task #6067 (Closed): Update documentation to reflect the new metacatui theme mechanism
ben leinfelder
11:40 AM Revision 8272 (metacat): minor edits to the UI theme section. https://projects.ecoinformatics.org/ecoinfo/issues/6067
ben leinfelder
11:36 AM Bug #5243: ldapweb.cgi crashes with invalid password characters
move it to 2.2.1 Jing Tao
10:58 AM Bug #5243: ldapweb.cgi crashes with invalid password characters
I agree to add guidelines for users. Jing Tao
10:55 AM Bug #5243: ldapweb.cgi crashes with invalid password characters
While we do allow someone to create an account with special characters as the password, I am unable to login using th... ben leinfelder
11:12 AM Story #6063 (Closed): ldapweb.cgi enhancements
ben leinfelder
10:50 AM Task #6113 (Resolved): Getting "Bad header" error when similar accounts are present
the new installation fixed the issue. Jing Tao
05:59 PM Task #6113: Getting "Bad header" error when similar accounts are present
i installed a new metacat with the trunk code. The ldap server points to ldap-dev. It works great with similar accou... Jing Tao
05:08 PM Task #6113 (Resolved): Getting "Bad header" error when similar accounts are present
WHen I try to register with an account that has similar info as an existing one (email, last name etc) on dev2.nceas.... ben leinfelder
10:24 AM Task #6115 (Resolved): ldapweb.cgi - default configuration should use o=unaffiliated
I change the configuration in the metacat.properties and nceas.properties. The default value now is unaffiliated. Jing Tao
09:48 AM Task #6115 (Resolved): ldapweb.cgi - default configuration should use o=unaffiliated
We are not yet ready to use ou=Account by default in our ldapweb skin configurations. ben leinfelder
09:46 AM Bug #6086 (Closed): publish service call fails to authenticate properly
ben leinfelder
09:23 AM Story #6114 (Closed): Include updated D1 indexing library
ben leinfelder
05:43 PM Revision 8271 (metacat): Change the default org from Account to unaffilicated in the account creation.
Jing Tao
05:41 PM Revision 8270 (metacat): Change the default org from Account to unaffiliated in the account creation.
Jing Tao

10/01/2013

04:59 PM Task #6096 (Closed): Add reCaptcha library instructions to admin docs
Added to the registry installation section. ben leinfelder
04:59 PM Revision 8269 (metacat): include reCaptcha instructions, albeit briefly. https://projects.ecoinformatics.org/ecoinfo/issues/6096
ben leinfelder
04:22 PM Task #6110 (Resolved): Use a new schema of dataone solr index so that the author last name can be sortable
Ben said skye developed a new schema of the dataone solr index so that the author last name can be sortable. We need ... Jing Tao
04:09 PM Feature #6109 (Closed): Keep the SOLR index for obsoleted objects
Currently, metacat only keeps the solr index for the current objects. The solr index for the obsoleted objects are re... Jing Tao
01:27 PM Feature #6107 (Rejected): Make publication year in search results less prominent
Should have put this in MetacatUI project Lauren Walker

09/30/2013

02:25 PM Feature #6107 (Rejected): Make publication year in search results less prominent
Move to the end of the citation line and preface with "Published:" Lauren Walker

09/27/2013

04:44 PM Revision 8268 (metacat): Add code to delete existing records for a id when we try to add the id to the index_event table.
Jing Tao

09/24/2013

04:34 PM Bug #6101 (Closed): MN.update() fails but modifies revision chain
Moved the call "existingSysMeta.setObsoletedBy(newPid);" to after the insert/update in Metacat is called.
ben leinfelder
04:09 PM Bug #6101 (Closed): MN.update() fails but modifies revision chain
Hello Ben, Chris,

I was trying to update two data and metadata files for some old subtidal data today and ran int...
ben leinfelder
04:21 PM Revision 8267 (metacat): do not modify existing SystemMetadata on MN.update() if something goes wrong during content insertion. https://projects.ecoinformatics.org/ecoinfo/issues/6101
ben leinfelder

09/23/2013

04:36 PM Story #6082 (Closed): Rename knb.war to ???.war
Using metacat.war now. ben leinfelder
04:35 PM Task #6087 (Closed): Change all default configurations to use new context
ben leinfelder
04:34 PM Task #6088 (Closed): Update documentation to use new context name
ben leinfelder
04:21 PM Revision 8266 (metacat): add note about restarting Tomcat when using Metacat indexing.
ben leinfelder
03:54 PM Revision 8265 (metacat): Refer to metacat.war deployments since those are now the default. https://projects.ecoinformatics.org/ecoinfo/issues/6082
ben leinfelder
01:21 PM Bug #6100 (Closed): Metacat search does not work for Chinese characters
Now forcing UTF-8 if the request does not specify and encoding. ben leinfelder
10:33 AM Bug #6100 (Closed): Metacat search does not work for Chinese characters
Hi Ben,
We found there is a searching problem on Metacat Home page. We can search Chinese characters correctly on ...
ben leinfelder
01:20 PM Revision 8264 (metacat): use UTF-8 if request encoding not given. https://projects.ecoinformatics.org/ecoinfo/issues/6100
ben leinfelder
12:03 PM Task #6067 (Feedback): Update documentation to reflect the new metacatui theme mechanism
Lauren Walker
11:51 AM Feature #6080 (Closed): Update Metacat admin screen using cues from the new default look and feel
Went through a review and it looks complete. Lauren Walker
11:50 AM Bug #6094 (Closed): Replace all screenshot images in the documentation with screenshots of the new documentation style
Added new screenshot images. Lauren Walker
11:48 AM Revision 8263 (metacat): Added the documentation for the new MetacatUI theming mechanism. Make some styling changes to the documentation and configuration pages and added Bootstrap and FontAwesome.
Lauren Walker
10:30 AM Task #6066 (Closed): Add email verification for new accounts
I made the activation link accessible via a configured #external url in the metacatui.properties file. This let's us ... ben leinfelder

09/20/2013

04:36 PM Revision 8262 (metacat): Remove an extra print content type statement.
Jing Tao
03:26 PM Revision 8261 (metacat): Add a print statment for "content type". Otherwise, the html can't show up.
Jing Tao
02:58 PM Revision 8260 (metacat): Use https to replace http. Otherwise, the recapatcha code can't show up in a https link.
Jing Tao
02:42 PM Revision 8259 (metacat): do not email a specific account reset URL so that the emails can be used in multiple UI contexts. https://projects.ecoinformatics.org/ecoinfo/issues/6066
ben leinfelder
01:17 PM Revision 8258 (metacat): Comment out some extral "contet type".
Jing Tao
12:48 PM Revision 8257 (metacat): add "btn" class as stop-gap for metacatUI styled email links. https://projects.ecoinformatics.org/ecoinfo/issues/6066
ben leinfelder
12:47 PM Revision 8256 (metacat): comment out the "forgot password?" link so that we can use the reset page in different UI locations.
ben leinfelder
12:30 PM Revision 8255 (metacat): remove unused JS that was only throwing an error when loaded via ajax
ben leinfelder
12:20 PM Revision 8254 (metacat): ensure all emailed links make sense for the UI that initiated them. also format referrals using the same options as the primary accounts (recursive call needed the html parameter). https://projects.ecoinformatics.org/ecoinfo/issues/6066
ben leinfelder
11:46 AM Revision 8253 (metacat): include optional email.overrideURL property for the account management page to send an email link that will result in a styled response. https://projects.ecoinformatics.org/ecoinfo/issues/6066
ben leinfelder
11:20 AM Task #6066 (In Progress): Add email verification for new accounts
This working great - only issue is that using the metacatui cfg we get an un-styled "Activation Successful!" page. Th... ben leinfelder
11:06 AM Task #6065 (Closed): Add reCaptcha widget to initial registration page
ben leinfelder
11:06 AM Revision 8252 (metacat): remove the NCEAS-specific admin db connection properties from the metadata config so they do not show up in the metacatui configuration.
ben leinfelder
10:59 AM Task #6098 (Closed): Make reCaptcha work with AJAX include
Works as expected now. ben leinfelder
08:33 AM Task #6098: Make reCaptcha work with AJAX include
This is now rendering on dev2. I did not know the private key for our recaptcha config, so it needs to be tested when... ben leinfelder
07:50 AM Task #6098: Make reCaptcha work with AJAX include
I included the ajax-style of recaptcha, but need to verify that it works. Jing - do you foresee any issues with using... ben leinfelder
07:45 AM Task #6098 (Closed): Make reCaptcha work with AJAX include
Instead of having the perl code generate the catcha content, the template can include the ajax-style of constructing ... ben leinfelder
10:47 AM Feature #6099 (Closed): Remove temporary LDAP accounts after X amount of time has passed
Users are added to a temporary LDAP tree until they activate their account via email. We should remove these accounts... ben leinfelder
10:44 AM Task #3306 (Closed): NCEAS skin account creation needs more thought
We've now made the text more generic so that the LDAP account creation feature can be used in multiple contexts and i... ben leinfelder
10:40 AM Task #2635 (Closed): Look up for forgotten KNB account names
This is working nicely. ben leinfelder
08:32 AM Revision 8251 (metacat): include link to show the captcha - ensures we have all the divs loaded when the script runs to generate the code. https://projects.ecoinformatics.org/ecoinfo/issues/6098
ben leinfelder
07:48 AM Revision 8250 (metacat): use AJAX method of including the captcha. https://projects.ecoinformatics.org/ecoinfo/issues/6098
ben leinfelder
05:04 PM Revision 8249 (metacat): Fixed a typo.
Jing Tao
05:03 PM Revision 8248 (metacat): Remove an extra space in the email message.
Jing Tao

09/19/2013

01:52 PM Revision 8247 (metacat): use correct id for the lookupAccount link - used in metacatui view.
ben leinfelder
12:38 PM Task #6096 (Closed): Add reCaptcha library instructions to admin docs
THis is a new dependency and should be documented in the registry install docs. ben leinfelder
12:16 PM Revision 8246 (metacat): More screenshots for the docs
Lauren Walker
11:59 AM Revision 8245 (metacat): FontAwesome and Bootstrap are imported locally rather than via CDN. Updated the docs screenshots to the new style.
Lauren Walker
11:39 AM Story #6082: Rename knb.war to ???.war
[11:34am] matt: ben: the more I think about it, I still think we should go with metacat.war, despite the duplicate pa... ben leinfelder
11:30 AM Revision 8244 (metacat): correct table formatting for sphinx
ben leinfelder

09/18/2013

04:09 PM Revision 8243 (metacat): Adding a protocol to the <link href=""> for the external CSS
Lauren Walker
03:50 PM Task #6095 (Closed): Pull metacatui from specific tag
added to build, but still pointing to 'master' for the time being. ben leinfelder
03:17 PM Task #6095 (Closed): Pull metacatui from specific tag
Right now it is pulling the HEAD for the build. Should pull a specific tag. ben leinfelder
03:50 PM Revision 8242 (metacat): pull a specific tag/branch form git when needed for metacatui.war
https://projects.ecoinformatics.org/ecoinfo/issues/6095 ben leinfelder
03:48 PM Revision 8241 (metacat): add anchor for plugin handlers property
ben leinfelder
03:37 PM Revision 8240 (metacat): Pull the external stylesheets in by <link> rather than @import for faster page load
Lauren Walker
03:15 PM Revision 8239 (metacat): Edit some of the instructions for activating an account. https://projects.ecoinformatics.org/ecoinfo/issues/6063
ben leinfelder
03:08 PM Revision 8238 (metacat): Edit some of the instructions for registering an account. https://projects.ecoinformatics.org/ecoinfo/issues/6063
ben leinfelder
03:07 PM Revision 8237 (metacat): add lookupname link to the login form. https://projects.ecoinformatics.org/ecoinfo/issues/2635
ben leinfelder
02:56 PM Revision 8236 (metacat): clone metacatui into a non-build directory so that it doesn't have to be recloned for every build.
ben leinfelder
02:01 PM Revision 8235 (metacat): Remove the words relative to knb.
Jing Tao
01:23 PM Revision 8234 (metacat): Remove the knb information in the emails.
Jing Tao
01:21 PM Revision 8233 (metacat): Add a link for forgot password in the loginForm.
Remove the words with specific knb. Jing Tao
11:22 AM Revision 8232 (metacat): Simplified the importing of images and stylesheets so that both /admin and /docs pull from /docs
Lauren Walker
10:28 AM Revision 8231 (metacat): Made some CSS changes to the "Go" button in the docs because it was off by a few pixels in three different browsers. Also changed the admin config landing page links to look like buttons
Lauren Walker
09:58 AM Revision 8230 (metacat): add documentation entries for fields that appear on the main metacat admin page.
ben leinfelder
09:04 AM Bug #6094 (Closed): Replace all screenshot images in the documentation with screenshots of the new documentation style
Lauren Walker
05:02 PM Revision 8229 (metacat): Add code to handle the looking up names.
Jing Tao

09/17/2013

04:53 PM Revision 8228 (metacat): Add two peroperties for the templates of looking up user name.
Jing Tao
04:50 PM Revision 8227 (metacat): Add a template to handle the success of looking up the username.
Jing Tao
04:49 PM Revision 8226 (metacat): Add a tempalte for users to look up the forgotten username.
Jing Tao
04:33 PM Revision 8225 (metacat): Imported FontAwesome after Bootstrap for the FontAwesome icons. Also added a white version of the metacat logo.
Lauren Walker
04:33 PM Revision 8224 (metacat): redirect to the configured metacatui context (ui.context in metacat.properties file). this in conjunction with choosing "metacatui" as the default skin in the metacat admin interface will redirect requests to the metacat context (e.g., /knb) to the ui context (e.g., /metacatui). https://projects.ecoinformatics.org/ecoinfo/issues/6062
ben leinfelder
04:32 PM Revision 8223 (metacat): prep for 2.2.0 release. include configuration value for metacatui deployment context.
ben leinfelder
04:19 PM Feature #6080 (Feedback): Update Metacat admin screen using cues from the new default look and feel
"wow" factor has been upped. :)
Pulled in more styling from the metacatUI default theme so the config pages have a...
Lauren Walker
10:40 AM Feature #6080 (In Progress): Update Metacat admin screen using cues from the new default look and feel
Via Ben, I'm upping the 'wow' factor Lauren Walker
04:17 PM Revision 8222 (metacat): Matched the admin config pages to the default metacatUI theme. Changed the background image of the docs and config pages to a big cat for some metacat branding.
Lauren Walker
03:22 PM Revision 8221 (metacat): Add a method to lookup users'account for the people who forgot their user name.
Jing Tao
10:36 AM Revision 8220 (metacat): Add code to generate dc=tmp. Clean up some code.
Jing Tao
10:20 AM Revision 8219 (metacat): bring the "Go" button down one more pixel to align with the search field.
ben leinfelder
09:58 AM Revision 8218 (metacat): Added a dark gray version of the metacat logo for the new configuration page styles
Lauren Walker
09:35 AM Feature #6092 (Closed): Science Metadata DOIs should point to "view" landing page
Added two optional entries in metacat.properties for including a template for the view landing page:... ben leinfelder
09:58 PM Revision 8217 (metacat): Remove a reistriction that it didn't show the similar accounts of "ou=Account" in the user registration.
Jing Tao
09:45 PM Revision 8216 (metacat): Use the specific template for the verification.
Jing Tao
09:44 PM Revision 8215 (metacat): Add information about the activation email.
Jing Tao
05:43 PM Revision 8214 (metacat): Add the new properties to access the verification templates.
Jing Tao
05:41 PM Revision 8213 (metacat): Add a new template to handle the success of the email verification.
Jing Tao
05:40 PM Revision 8212 (metacat): Add a new template to handle the failure during the email verification.
Jing Tao
05:00 PM Revision 8211 (metacat): Fixed a bug that email verificaton doesn't work well on "ou=Account".
Jing Tao

09/16/2013

04:34 PM Bug #6086 (Feedback): publish service call fails to authenticate properly
Now requiring authentication (session) to generate an identifier. Not reserving it with the CN at this point. ben leinfelder
03:49 PM Bug #6086: publish service call fails to authenticate properly
Added the dataone.subject to the list of metacat admins. This identity will enjoy the perks of being an admin when ac... ben leinfelder
02:34 PM Bug #6086: publish service call fails to authenticate properly
Part of the issue was not running under SSL. Fixing that, the correct update() command would be:... Matt Jones
04:33 PM Revision 8210 (metacat): require authenticated session when minting a DOI/other identifier. https://projects.ecoinformatics.org/ecoinfo/issues/6086
ben leinfelder
04:19 PM Revision 8209 (metacat): test that d1 node admin is allowed all permissions. https://projects.ecoinformatics.org/ecoinfo/issues/6086
ben leinfelder
03:47 PM Revision 8208 (metacat): include the dataone.subject (node admin) in the list of administrators. This allows full administrative access to objects when using certificates+d1 api. https://projects.ecoinformatics.org/ecoinfo/issues/6086
ben leinfelder
03:16 PM Revision 8207 (metacat): Fixed a bug to split the organization list from a property file.
Fixed a bug to use a wrong object class for the ou. Jing Tao
02:31 PM Revision 8206 (metacat): Pass a organization list to the template.
Jing Tao
02:29 PM Revision 8205 (metacat): replace the hard-coded organization list.
Jing Tao
02:22 PM Revision 8204 (metacat): test for configured target url template on metadata using the default #view url. https://projects.ecoinformatics.org/ecoinfo/issues/6092
ben leinfelder
01:42 PM Feature #6080 (Closed): Update Metacat admin screen using cues from the new default look and feel
Configuration pages have new CSS and the HTML was updated a bit so it now fits in with the default metacatUI theme. Lauren Walker
01:41 PM Revision 8203 (metacat): Redesigned the /admin configuration pages to better match our new MetacatUI design. Looks good in both /context/admin view and the #external view using metacatUI
Lauren Walker
12:00 PM Revision 8202 (metacat): use optional template for registering DOIs at a given target. https://projects.ecoinformatics.org/ecoinfo/issues/6092
ben leinfelder
11:14 AM Feature #6092 (Closed): Science Metadata DOIs should point to "view" landing page
We'll use a configurable template for the URI in metacat.properties that will allow us flexibility in determining wha... ben leinfelder
10:32 AM Revision 8201 (metacat): Add code to get organization information from the ldapconfig.
Jing Tao

09/13/2013

03:58 PM Bug #6061 (Closed): Ensure that all packages from metacat API have resource map
Now generating OREs when Metacat API is used to insert science metadata.
Also added a better check for existing OR...
ben leinfelder
03:53 PM Revision 8200 (metacat): only attempt to generate OREs for objects that we know not to have them already. https://projects.ecoinformatics.org/ecoinfo/issues/6061
ben leinfelder
03:46 PM Revision 8199 (metacat): Add a new property to control showing the organization list.
Jing Tao
03:45 PM Revision 8198 (metacat): Add a new property ldap.template.organizationList to control the list of the organization in the ldap templates.
It can be overwitten by the skin property with the same name.
Also add the Account organization.
Jing Tao
03:01 PM Revision 8197 (metacat): First get the email sender from the skin properties. If it is null, get it from the metacat.properties file.
Jing Tao
02:11 PM Revision 8196 (metacat): A few style changes to the docs
Lauren Walker
01:30 PM Revision 8195 (metacat): Remove the sentence which saied the failure reason is the uid has been used.
Jing Tao
01:25 PM Revision 8194 (metacat): Reword a message for the failed verification.
Jing Tao
11:12 AM Revision 8193 (metacat): Generate an ORE when sci metadata is added via the Metacat API.
https://projects.ecoinformatics.org/ecoinfo/issues/6061 ben leinfelder
10:02 AM Revision 8192 (metacat): Added an ID and div wrapper to the docs html for more precise CSS selectors in the metacatui ExternalView.
Lauren Walker
05:12 PM Revision 8191 (metacat): Add code to handle the failure of the email server.
Jing Tao

09/12/2013

04:50 PM Revision 8190 (metacat): better checking for ORE maps when publishing DOIs (need to update the packages that contain sci meta). https://projects.ecoinformatics.org/ecoinfo/issues/6061
ben leinfelder
01:45 PM Revision 8189 (metacat): implement ORE check method to actually query the MN for OREs that reference the given pid.
https://projects.ecoinformatics.org/ecoinfo/issues/6061 ben leinfelder
11:25 AM Feature #6075 (Closed): Modify Metacat admin documentation so that it uses the chosen theme in the browser
It won't be possible to view the docs in a theme before configuration, so I created a new Sphinx theme to mirror the ... Lauren Walker
11:19 AM Revision 8188 (metacat): Added a Sphinx theme for the documentation that mirrors the new default theme for MetacatUI.
https://projects.ecoinformatics.org/ecoinfo/issues/6075 Lauren Walker
10:48 AM Feature #6089 (Closed): Remove index_event record when reindex is successful
Now calling the event log remove() method for all successful reindex attempts. ben leinfelder
10:43 AM Feature #6089 (In Progress): Remove index_event record when reindex is successful
I think this will be useful, especially for cases like what Mike Frenock is experiencing - manually reindexing items ... ben leinfelder
10:45 AM Revision 8187 (metacat): remove any index event errors if the pid has successfully been reindexed. https://projects.ecoinformatics.org/ecoinfo/issues/6089
ben leinfelder
09:57 PM Revision 8186 (metacat): Add code to check if password match in the registeration.
Jing Tao
09:36 PM Revision 8185 (metacat): Add the new feature for the email verification.
Jing Tao

09/11/2013

10:59 AM Revision 8184 (metacat): change hazelcast group name to match the current context. https://projects.ecoinformatics.org/ecoinfo/issues/5624
ben leinfelder
10:49 AM Revision 8183 (metacat): try to cut down on the number of metacat-ui build calls - the SEEK build ends up calling war target more oftenthan not!
ben leinfelder
10:13 AM Feature #6089 (Closed): Remove index_event record when reindex is successful
If manually reindexing a pid that had an error, we should remove the record (if it exists) from the index_event table... ben leinfelder
09:28 AM Revision 8182 (metacat): Fixed a bug that the url link was not correct in the email.
Jing Tao
 

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