Activity
From 09/11/2013 to 10/10/2013
10/10/2013
- 12:43 PM Bug #6136: files left open causes too many file descriptors on OS
- A brief overview of how I was inspecting memory, threads, file descriptors, etc. while stress testing Metacat. This ...
- 12:12 PM Bug #6138 (Closed): Metacat-index assumes default "knb" context
- 09:39 AM Task #6040: Metacat-index does not handle <references>
- Even with a SAX parser, the implementation could keep track of all elements with "id" attributes and anytime a "refer...
- 09:36 AM Task #6040: Metacat-index does not handle <references>
- Skye said that the sax parser is used to parse those information. This change may require to use DOM parser. It is a...
- 09:37 AM Bug #6137 (Resolved): Add a new action reindexall to reindex all the solr index
- Just leave as it is.
- 09:33 AM Task #6110 (Resolved): Use a new schema of dataone solr index so that the author last name can be sortable
- Skype released a "buildout" component DATAONE-CN-INDEX_v1.2.1. It only has the schema change. Now our schema is using...
10/09/2013
- 11:57 PM Bug #6136: files left open causes too many file descriptors on OS
- Checked all instances of FileInputReader and ensured that close() was being called properly. See commit r8304.
- 03:05 PM Bug #6136: files left open causes too many file descriptors on OS
- After looking into this, its not just file handles that are left open, but many InputStream and OutputStream instance...
- 01:53 PM Bug #6136: files left open causes too many file descriptors on OS
- Switched to using IOUtils.closeQuietly() which handles nulls and already closed file handles in r8299.
- 01:28 PM Bug #6136: files left open causes too many file descriptors on OS
- Also added a close() to the finally block in DocumentImpl.readFromFileSystem() in r8298. This is probably not causin...
- 01:05 PM Bug #6136: files left open causes too many file descriptors on OS
- Closed file handles in DocumentImpl and ReplicationService in commit r8297.
- 01:03 PM Bug #6136 (Closed): files left open causes too many file descriptors on OS
- Metacat writes temp files to disk, and in the process has been failing to close file handles. Over time, especially ...
- 10:03 PM Bug #6137: Add a new action reindexall to reindex all the solr index
- I read this message after i committed the change :)
I still think we should give an expensive process a dedicated ... - 04:52 PM Bug #6137: Add a new action reindexall to reindex all the solr index
- I think this would be redundant and it would be better to just leave it as is, and have administrators use care. The...
- 04:14 PM Bug #6137 (Resolved): Add a new action reindexall to reindex all the solr index
- Currently we have an action named reindex. If the action has a parameter pid, it will reindex the solr index of the s...
- 04:02 PM Story #6114: Include updated D1 indexing library
- After changing the version depency on the metacat-index pom.xml and some code change, the new version works.
Ther... - 03:27 PM Task #6110: Use a new schema of dataone solr index so that the author last name can be sortable
- Won't this be included in the next (1.2.1) release of the library as well? Could just wait for that if it is coming u...
- 03:23 PM Task #6110: Use a new schema of dataone solr index so that the author last name can be sortable
- After adopting the d1_cn_index_processor 1.2.0, the authorSurNameSort field is sortable. But it doesn't work very wel...
- 03:20 PM Feature #6109 (Resolved): Keep the SOLR index for obsoleted objects
- Removed the code which excluded the obsoleted objects from indexing. Next release, we need to notice the metacat owne...
- 03:17 PM Bug #6122 (Resolved): Metacat-index can't index taxon information
- Adopted d1_cn_index_processor 1.2.0 into metacat. The new version processor can index taxon information.
10/07/2013
- 04:09 PM Story #6128 (Closed): Wait for MetacatUI 1.1.0 release
- Using MetacatUI 1.1.0 tag.
https://github.com/NCEAS/metacatui/tree/METACATUI_1_1_0
10/04/2013
- 05:32 PM Story #6128 (Closed): Wait for MetacatUI 1.1.0 release
- 11:39 AM Bug #6123 (Rejected): Rework on the IndexGenerator class in the metacat-index module
- The IndexGenerator class has two purpose - first, to create the solr index for all data objects for a Metacat which i...
- 11:20 AM Bug #6122: Metacat-index can't index taxon information
- This will be fixed by adopting d1_cn_index_processor 1.2 in the 2.2.1 release.
10/03/2013
- 09:54 PM Bug #6117 (Resolved): Reindexing (action=reindex) only works once
- I installed a metacat from the 2.2.0 branch. It works very well for the reindex action.
I also deleted the solr in... - 12:46 PM Bug #6117 (In Progress): Reindexing (action=reindex) only works once
- Added code to remove from the queue when responding to the add event. Testing now.
- 12:39 PM Bug #6117 (Resolved): Reindexing (action=reindex) only works once
- 05:47 PM Bug #6122: Metacat-index can't index taxon information
- I committed those files to the trunk and it works. I haven't committed to the 2.2.0 branch.
- 05:46 PM Bug #6122 (Resolved): Metacat-index can't index taxon information
- With the help of Skye, we patched 5 files: application-context-eml-base.xml, application-context-eml201.xml, applicat...
- 12:17 PM Task #6040: Metacat-index does not handle <references>
- Spaces aren't really sufficient as a solution, and there are a lot of references fields in EML. We probably need to ...
- 12:01 PM Task #6040: Metacat-index does not handle <references>
- This is included in the 1.2.0 d1 index release. It will not include || but instead will use blanks. Not a very great ...
- 11:07 AM Task #6040: Metacat-index does not handle <references>
- Apparently this is fixed in cn-index-processor v1.2.0 -- so we will need to pull in this newer dependency in metacat-...
- 11:59 AM Task #6110: Use a new schema of dataone solr index so that the author last name can be sortable
- This is included in the v1.2.0 release of d1 indexing -- called "authorSurNameSort"
Schema:
https://repository.da... - 11:47 AM Feature #6031 (Rejected): Add rendered metadata to Bagit package contents
- Duplicate of 6053
10/02/2013
- 11:41 AM Story #6062 (Closed): Deprecate skin configuration
- 11:40 AM Task #6067 (Closed): Update documentation to reflect the new metacatui theme mechanism
- 11:36 AM Bug #5243: ldapweb.cgi crashes with invalid password characters
- move it to 2.2.1
- 10:58 AM Bug #5243: ldapweb.cgi crashes with invalid password characters
- I agree to add guidelines for users.
- 10:55 AM Bug #5243: ldapweb.cgi crashes with invalid password characters
- While we do allow someone to create an account with special characters as the password, I am unable to login using th...
- 11:12 AM Story #6063 (Closed): ldapweb.cgi enhancements
- 10:50 AM Task #6113 (Resolved): Getting "Bad header" error when similar accounts are present
- the new installation fixed the issue.
- 10:24 AM Task #6115 (Resolved): ldapweb.cgi - default configuration should use o=unaffiliated
- I change the configuration in the metacat.properties and nceas.properties. The default value now is unaffiliated.
- 09:48 AM Task #6115 (Resolved): ldapweb.cgi - default configuration should use o=unaffiliated
- We are not yet ready to use ou=Account by default in our ldapweb skin configurations.
- 09:46 AM Bug #6086 (Closed): publish service call fails to authenticate properly
- 09:23 AM Story #6114 (Closed): Include updated D1 indexing library
10/01/2013
- 05:59 PM Task #6113: Getting "Bad header" error when similar accounts are present
- i installed a new metacat with the trunk code. The ldap server points to ldap-dev. It works great with similar accou...
- 05:08 PM Task #6113 (Resolved): Getting "Bad header" error when similar accounts are present
- WHen I try to register with an account that has similar info as an existing one (email, last name etc) on dev2.nceas....
- 04:59 PM Task #6096 (Closed): Add reCaptcha library instructions to admin docs
- Added to the registry installation section.
- 04:22 PM Task #6110 (Resolved): Use a new schema of dataone solr index so that the author last name can be sortable
- Ben said skye developed a new schema of the dataone solr index so that the author last name can be sortable. We need ...
- 04:09 PM Feature #6109 (Closed): Keep the SOLR index for obsoleted objects
- Currently, metacat only keeps the solr index for the current objects. The solr index for the obsoleted objects are re...
- 01:27 PM Feature #6107 (Rejected): Make publication year in search results less prominent
- Should have put this in MetacatUI project
09/30/2013
- 02:25 PM Feature #6107 (Rejected): Make publication year in search results less prominent
- Move to the end of the citation line and preface with "Published:"
09/24/2013
- 04:34 PM Bug #6101 (Closed): MN.update() fails but modifies revision chain
- Moved the call "existingSysMeta.setObsoletedBy(newPid);" to after the insert/update in Metacat is called.
- 04:09 PM Bug #6101 (Closed): MN.update() fails but modifies revision chain
- Hello Ben, Chris,
I was trying to update two data and metadata files for some old subtidal data today and ran int...
09/23/2013
- 04:36 PM Story #6082 (Closed): Rename knb.war to ???.war
- Using metacat.war now.
- 04:35 PM Task #6087 (Closed): Change all default configurations to use new context
- 04:34 PM Task #6088 (Closed): Update documentation to use new context name
- 01:21 PM Bug #6100 (Closed): Metacat search does not work for Chinese characters
- Now forcing UTF-8 if the request does not specify and encoding.
- 10:33 AM Bug #6100 (Closed): Metacat search does not work for Chinese characters
- Hi Ben,
We found there is a searching problem on Metacat Home page. We can search Chinese characters correctly on ... - 12:03 PM Task #6067 (Feedback): Update documentation to reflect the new metacatui theme mechanism
- 11:51 AM Feature #6080 (Closed): Update Metacat admin screen using cues from the new default look and feel
- Went through a review and it looks complete.
- 11:50 AM Bug #6094 (Closed): Replace all screenshot images in the documentation with screenshots of the new documentation style
- Added new screenshot images.
- 10:30 AM Task #6066 (Closed): Add email verification for new accounts
- I made the activation link accessible via a configured #external url in the metacatui.properties file. This let's us ...
09/20/2013
- 11:20 AM Task #6066 (In Progress): Add email verification for new accounts
- This working great - only issue is that using the metacatui cfg we get an un-styled "Activation Successful!" page. Th...
- 11:06 AM Task #6065 (Closed): Add reCaptcha widget to initial registration page
- 10:59 AM Task #6098 (Closed): Make reCaptcha work with AJAX include
- Works as expected now.
- 08:33 AM Task #6098: Make reCaptcha work with AJAX include
- This is now rendering on dev2. I did not know the private key for our recaptcha config, so it needs to be tested when...
- 07:50 AM Task #6098: Make reCaptcha work with AJAX include
- I included the ajax-style of recaptcha, but need to verify that it works. Jing - do you foresee any issues with using...
- 07:45 AM Task #6098 (Closed): Make reCaptcha work with AJAX include
- Instead of having the perl code generate the catcha content, the template can include the ajax-style of constructing ...
- 10:47 AM Feature #6099 (Closed): Remove temporary LDAP accounts after X amount of time has passed
- Users are added to a temporary LDAP tree until they activate their account via email. We should remove these accounts...
- 10:44 AM Task #3306 (Closed): NCEAS skin account creation needs more thought
- We've now made the text more generic so that the LDAP account creation feature can be used in multiple contexts and i...
- 10:40 AM Task #2635 (Closed): Look up for forgotten KNB account names
- This is working nicely.
09/19/2013
- 12:38 PM Task #6096 (Closed): Add reCaptcha library instructions to admin docs
- THis is a new dependency and should be documented in the registry install docs.
- 11:39 AM Story #6082: Rename knb.war to ???.war
- [11:34am] matt: ben: the more I think about it, I still think we should go with metacat.war, despite the duplicate pa...
09/18/2013
- 03:50 PM Task #6095 (Closed): Pull metacatui from specific tag
- added to build, but still pointing to 'master' for the time being.
- 03:17 PM Task #6095 (Closed): Pull metacatui from specific tag
- Right now it is pulling the HEAD for the build. Should pull a specific tag.
- 09:04 AM Bug #6094 (Closed): Replace all screenshot images in the documentation with screenshots of the new documentation style
09/17/2013
- 04:19 PM Feature #6080 (Feedback): Update Metacat admin screen using cues from the new default look and feel
- "wow" factor has been upped. :)
Pulled in more styling from the metacatUI default theme so the config pages have a... - 10:40 AM Feature #6080 (In Progress): Update Metacat admin screen using cues from the new default look and feel
- Via Ben, I'm upping the 'wow' factor
- 09:35 AM Feature #6092 (Closed): Science Metadata DOIs should point to "view" landing page
- Added two optional entries in metacat.properties for including a template for the view landing page:...
09/16/2013
- 04:34 PM Bug #6086 (Feedback): publish service call fails to authenticate properly
- Now requiring authentication (session) to generate an identifier. Not reserving it with the CN at this point.
- 03:49 PM Bug #6086: publish service call fails to authenticate properly
- Added the dataone.subject to the list of metacat admins. This identity will enjoy the perks of being an admin when ac...
- 02:34 PM Bug #6086: publish service call fails to authenticate properly
- Part of the issue was not running under SSL. Fixing that, the correct update() command would be:...
- 01:42 PM Feature #6080 (Closed): Update Metacat admin screen using cues from the new default look and feel
- Configuration pages have new CSS and the HTML was updated a bit so it now fits in with the default metacatUI theme.
- 11:14 AM Feature #6092 (Closed): Science Metadata DOIs should point to "view" landing page
- We'll use a configurable template for the URI in metacat.properties that will allow us flexibility in determining wha...
09/13/2013
- 03:58 PM Bug #6061 (Closed): Ensure that all packages from metacat API have resource map
- Now generating OREs when Metacat API is used to insert science metadata.
Also added a better check for existing OR...
09/12/2013
- 11:25 AM Feature #6075 (Closed): Modify Metacat admin documentation so that it uses the chosen theme in the browser
- It won't be possible to view the docs in a theme before configuration, so I created a new Sphinx theme to mirror the ...
- 10:48 AM Feature #6089 (Closed): Remove index_event record when reindex is successful
- Now calling the event log remove() method for all successful reindex attempts.
- 10:43 AM Feature #6089 (In Progress): Remove index_event record when reindex is successful
- I think this will be useful, especially for cases like what Mike Frenock is experiencing - manually reindexing items ...
09/11/2013
- 10:13 AM Feature #6089 (Closed): Remove index_event record when reindex is successful
- If manually reindexing a pid that had an error, we should remove the record (if it exists) from the index_event table...
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