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From 10/09/2013 to 11/07/2013

11/07/2013

02:17 PM Bug #6191 (Closed): Wrap ldapweb.cgi links from register-data.cgi metacatui template in div
ben leinfelder
09:14 AM Bug #6193 (Closed): obsoleted versions of objects show up in KNB theme
ben leinfelder

11/04/2013

04:27 PM Bug #6183 (Resolved): CNodeService API calls don't honor authoritative MN certificates
Implemented the D1NodeService.isAuthoritativeNodeAdmin() method and put them into the appropriate place. The both MN ... Jing Tao
01:57 PM Bug #6194 (In Progress): publish service does not create an ORE document
Will deploy and test this on dev2. ben leinfelder

11/01/2013

12:31 PM Bug #6193 (In Progress): obsoleted versions of objects show up in KNB theme
Tested on dev2 and it works as expected:
original:
http://dev2.nceas.ucsb.edu/metacat/d1/mn/v1/meta/knb.438.1
pu...
ben leinfelder
12:05 PM Bug #6193: obsoleted versions of objects show up in KNB theme
Corrected my comments (was reading too fast this morning) - yes, the MN.update() call should be updating the obsolete... ben leinfelder
10:33 AM Bug #6193: obsoleted versions of objects show up in KNB theme
That's not what I am seeing. Did you change something manually?
The sysmeta for the new DOI: https://knb.ecoinfor...
Matt Jones
07:29 AM Bug #6193: obsoleted versions of objects show up in KNB theme
This is not a UI issue, the SM.obsoletedBy field is null for 'solson.11.6'. This was supposed to be fixed by https://... ben leinfelder
08:23 AM Bug #4690 (Closed): register-dataset.cgi should have its permissions set
Now using runtime exec to do a chmod +x on the *.cgi files during the main configuration. ben leinfelder
07:57 AM Bug #4690: register-dataset.cgi should have its permissions set
Can do this on *nix deployments. ben leinfelder
07:34 AM Feature #6196 (Rejected): ORE documents should be generated for new EML records from the Metacat API
This behavior was added in v2.2.0. https://projects.ecoinformatics.org/ecoinfo/issues/6061 ben leinfelder
12:16 AM Feature #6196 (Rejected): ORE documents should be generated for new EML records from the Metacat API
Currently, if a metadata document is uploaded via the Metacat API (action=insert or action=update), it does not conta... Matt Jones

10/31/2013

11:59 PM Bug #6194 (Closed): publish service does not create an ORE document
When the 'publish' service is called from the GUI in MetacatUI, it should generate an OAI-ORE package so that the lin... Matt Jones
11:53 PM Bug #6193 (Closed): obsoleted versions of objects show up in KNB theme
From the MetacatUI page for solson.11.6, I logged in and used the Publish button to generate the DOI doi:10.5063/F1QN... Matt Jones
04:48 PM Bug #6191 (Closed): Wrap ldapweb.cgi links from register-data.cgi metacatui template in div
ben leinfelder
01:46 PM Bug #6183: CNodeService API calls don't honor authoritative MN certificates
This method will be applied to both the CN and MN methods. Jing Tao
09:41 AM Feature #6099 (Closed): Remove temporary LDAP accounts after X amount of time has passed
Now removing expired user accounts in the dc=tmp subtree. This is done whenever someone tries to register an account ... ben leinfelder

10/30/2013

05:22 PM Bug #6185 (New): Chinese characters are sorted before alphanumeric characters
Not sure if this is a MetacatUI or Metacat bug?
It may be technically correct, but it is not very user friendly to...
Lauren Walker
03:25 PM Bug #6183 (Resolved): CNodeService API calls don't honor authoritative MN certificates
In working with Mark Reyes on calling CN.archive() and CN.setObsoletedBy() calls for the Merritt repository, he repor... Chris Jones
10:50 AM Bug #3218 (Closed): nceas skin front page has font size differences
Matt Jones
10:45 AM Bug #213 (New): transaction support for packages
Need to decide if this transaction feature is useful or not, and if not then delete this request. We have operated f... Matt Jones
10:44 AM Feature #6109 (Closed): Keep the SOLR index for obsoleted objects
Now, the solr index has the same behavior of the cn: remove the index for archived objects; keep the index for obsol... Jing Tao
10:42 AM Bug #1366 (Rejected): Changes in review entry page
Rejecting this bug report because it is no longer relevant bcse we aren;t supporting review entry any longer, plus it... Matt Jones
10:39 AM Bug #433 (Closed): browse interface to metacat
Closing as no longer relevant with the new MetacatUI theme work. Matt Jones
10:22 AM Feature #6099 (In Progress): Remove temporary LDAP accounts after X amount of time has passed
Trying a dry-run of this on dev2. Using 36 hour expiration for now - configurable in metacat.properties on a per-orga... ben leinfelder
08:49 AM Story #6114 (Closed): Include updated D1 indexing library
I believe this is complete. ben leinfelder

10/29/2013

07:38 AM Feature #6109 (Rejected): Keep the SOLR index for obsoleted objects
I believe we decided to keep this as is: removing archived objects from the index, but keeping the entries that have ... ben leinfelder

10/28/2013

11:01 AM Feature #6109: Keep the SOLR index for obsoleted objects
Note: we only removed the solr index for the archived objects. Jing Tao
10:56 AM Feature #6109 (In Progress): Keep the SOLR index for obsoleted objects
Currently, the solr index will keep both obsoleted and archived objects. The cn only keeps obsoleted objects but remo... Jing Tao

10/18/2013

04:01 PM Bug #6161 (Closed): Add access_log indexes to support DataONE log retrieval
These are in the trunk now. For large repositories, it may be necessary to increase postgres configuration values so ... ben leinfelder
12:14 PM Bug #6161 (Closed): Add access_log indexes to support DataONE log retrieval
ben leinfelder

10/17/2013

04:04 PM Bug #6123: Rework on the IndexGenerator class in the metacat-index module
I am thinking of the issues about moving the class to Metacat:
This class is a backup plan. If we move it to Metac...
Jing Tao
01:43 PM Bug #6157 (Resolved): Couldn't control the log level in solr
It turned out that the solr-core.jar and other solr jar files are using the slf4j logging mechanism. It comes with tw... Jing Tao
01:36 PM Bug #6157 (Resolved): Couldn't control the log level in solr
Our current log control didn't work with the log from solr. It has the default value - INFO. The log message was very... Jing Tao

10/16/2013

05:24 PM Bug #6154 (Resolved): The metacat configuration showed that it was done even though the dataONE configuration hadn't been touched
Add a new class DataONEConfigUtil. It has a method to determine if the configuration for DataONE is done or not.
Thi...
Jing Tao
05:23 PM Bug #6154 (Resolved): The metacat configuration showed that it was done even though the dataONE configuration hadn't been touched
It seems the configuration ignore the dataONE part. Jing Tao

10/15/2013

10:34 AM Bug #6141 (Closed): Permission denied to update/publish metadata for group member on Gulfwatch
ben leinfelder
10:31 AM Bug #6141 (In Progress): Permission denied to update/publish metadata for group member on Gulfwatch
In the branch - being included in 2.2.1 patch for MN and CNs ben leinfelder
08:36 AM Bug #6141: Permission denied to update/publish metadata for group member on Gulfwatch
Yes, she was logged in fully. I was tailing the logs and watched her log in, and could see the entry scroll by. Als... Matt Jones
06:47 AM Bug #6141: Permission denied to update/publish metadata for group member on Gulfwatch
My first guess is that there is something not quite right with the login/session since the error message only mention... ben leinfelder
10:34 AM Bug #6136 (Closed): files left open causes too many file descriptors on OS
ben leinfelder
10:33 AM Bug #6142: Metacat.property guid.ezid.unitemplate.metadata includes context
This is in the 2.2 branch. ben leinfelder
06:47 AM Bug #6142: Metacat.property guid.ezid.unitemplate.metadata includes context
This should be included in the upcoming patch release. ben leinfelder
10:31 AM Bug #6138 (Closed): Metacat-index assumes default "knb" context
ben leinfelder

10/11/2013

05:39 PM Bug #6142 (Resolved): Metacat.property guid.ezid.unitemplate.metadata includes context

This has been changed to just be the hostname only.
The metacat.properties file on the Gulfwatch server is also ...
Lauren Walker
05:36 PM Bug #6141 (Closed): Permission denied to update/publish metadata for group member on Gulfwatch
Sarah Clark was unable to publish metadata on Gulfwatch even though she is a member of the evos group which has permi... Lauren Walker

10/10/2013

12:43 PM Bug #6136: files left open causes too many file descriptors on OS
A brief overview of how I was inspecting memory, threads, file descriptors, etc. while stress testing Metacat. This ... Matt Jones
12:12 PM Bug #6138 (Closed): Metacat-index assumes default "knb" context
ben leinfelder
09:39 AM Task #6040: Metacat-index does not handle <references>
Even with a SAX parser, the implementation could keep track of all elements with "id" attributes and anytime a "refer... ben leinfelder
09:36 AM Task #6040: Metacat-index does not handle <references>
Skye said that the sax parser is used to parse those information. This change may require to use DOM parser. It is a... Jing Tao
09:37 AM Bug #6137 (Resolved): Add a new action reindexall to reindex all the solr index
Just leave as it is. Jing Tao
09:33 AM Task #6110 (Resolved): Use a new schema of dataone solr index so that the author last name can be sortable
Skype released a "buildout" component DATAONE-CN-INDEX_v1.2.1. It only has the schema change. Now our schema is using... Jing Tao

10/09/2013

11:57 PM Bug #6136: files left open causes too many file descriptors on OS
Checked all instances of FileInputReader and ensured that close() was being called properly. See commit r8304.
Matt Jones
03:05 PM Bug #6136: files left open causes too many file descriptors on OS
After looking into this, its not just file handles that are left open, but many InputStream and OutputStream instance... Matt Jones
01:53 PM Bug #6136: files left open causes too many file descriptors on OS
Switched to using IOUtils.closeQuietly() which handles nulls and already closed file handles in r8299. Matt Jones
01:28 PM Bug #6136: files left open causes too many file descriptors on OS
Also added a close() to the finally block in DocumentImpl.readFromFileSystem() in r8298. This is probably not causin... Matt Jones
01:05 PM Bug #6136: files left open causes too many file descriptors on OS
Closed file handles in DocumentImpl and ReplicationService in commit r8297. Matt Jones
01:03 PM Bug #6136 (Closed): files left open causes too many file descriptors on OS
Metacat writes temp files to disk, and in the process has been failing to close file handles. Over time, especially ... Matt Jones
10:03 PM Bug #6137: Add a new action reindexall to reindex all the solr index
I read this message after i committed the change :)
I still think we should give an expensive process a dedicated ...
Jing Tao
04:52 PM Bug #6137: Add a new action reindexall to reindex all the solr index
I think this would be redundant and it would be better to just leave it as is, and have administrators use care. The... Matt Jones
04:14 PM Bug #6137 (Resolved): Add a new action reindexall to reindex all the solr index
Currently we have an action named reindex. If the action has a parameter pid, it will reindex the solr index of the s... Jing Tao
04:02 PM Story #6114: Include updated D1 indexing library
After changing the version depency on the metacat-index pom.xml and some code change, the new version works.
Ther...
Jing Tao
03:27 PM Task #6110: Use a new schema of dataone solr index so that the author last name can be sortable
Won't this be included in the next (1.2.1) release of the library as well? Could just wait for that if it is coming u... ben leinfelder
03:23 PM Task #6110: Use a new schema of dataone solr index so that the author last name can be sortable
After adopting the d1_cn_index_processor 1.2.0, the authorSurNameSort field is sortable. But it doesn't work very wel... Jing Tao
03:20 PM Feature #6109 (Resolved): Keep the SOLR index for obsoleted objects
Removed the code which excluded the obsoleted objects from indexing. Next release, we need to notice the metacat owne... Jing Tao
03:17 PM Bug #6122 (Resolved): Metacat-index can't index taxon information
Adopted d1_cn_index_processor 1.2.0 into metacat. The new version processor can index taxon information. Jing Tao
 

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