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From 06/07/2006 to 07/06/2006

07/06/2006

12:48 PM Bug #2488: NPS-PLOTS import Growth Form Bug
Half of this stuff is a problem in the custNPS_intGF12() function Michael Lee
12:30 PM Bug #2488: NPS-PLOTS import Growth Form Bug
"unknown" gf should be "other/unknown" as in the list Michael Lee
12:13 PM Bug #2488: NPS-PLOTS import Growth Form Bug
also update cover codes to round them to values of 6 digits past decimal Michael Lee
11:59 AM Bug #2488: NPS-PLOTS import Growth Form Bug
remove dashes and spaces from case statements, add "forestwoodland" Michael Lee
11:52 AM Bug #2488 (Resolved): NPS-PLOTS import Growth Form Bug
"forest, woodland" Michael Lee
11:33 AM Bug #2487 (New): NPS-PLOTS conversion utility: prefer exact slope/aspect
make conversion utility prefer exact (numerical) slope and aspect if possible. Michael Lee

07/03/2006

04:48 PM Bug #2481: Fix Backup Strategy: where backups go
colby has responded and backups will be easily done. We should definitely shift our strategy to putting the latest c... Michael Lee
10:36 AM Bug #2486 (Resolved): Certification Request form broken in Regions
Regions do not store in the database correctly, or users didn't fill them out. In any case, none are displayed on th... Michael Lee
10:28 AM Bug #2457: Link to list of certified users, renew embargo screens
Would be nice to link to the plots that a certified user has submitted from the list. Need a more compact list, too.... Michael Lee
10:23 AM Bug #2457: Link to list of certified users, renew embargo screens
Ceritifed user's registry is not viewable b/c there aren't enough users to make it worthwile to view:
http://aldo.ve...
Michael Lee
10:01 AM Bug #2457: Link to list of certified users, renew embargo screens
renew embargo screen is linked through "MY Account"
http://aldo.vegbank.org/vegbank/general/account.html
Michael Lee
09:59 AM Bug #2484: add min cover % and max cover % to constancy table
added these to SQL View, SQL Store, and JSP View. Need to make the js sorter smarter to deal with a top-top header a... Michael Lee
09:30 AM Bug #2478: Implement Nightly/Weekly Cron (SQL)
I've come up with the SQL, but that's all I can do with this. Chad, can that be implemented with a Cron on a nightly... Michael Lee
09:29 AM Bug #2403: add accessionCode to more tables in db
accomplished in bug 2303, testing done. Michael Lee
09:28 AM Bug #2306: change elevationAccuracy to meters, not %
accomplished in bug 2303. Michael Lee
09:28 AM Bug #2305: Add fields to explicitly note that there are NO SPECIES on a plot, or no stems on a plot
accomplished in bug 2303, testing to be dealt with there. Michael Lee
09:28 AM Bug #2303: TEST: Misc model changes
changes script checked into /src/sql/vegbank-changes-1.0.5.sql
Now needs testing that
1) accessionCodes update (YES...
Michael Lee
09:25 AM Bug #2453: Empty DB created, add necessary population + verify
Might we be able to get by with an update script from schema 1 to schema 2. Realistically, this will be needed as we... Michael Lee

06/28/2006

04:28 PM Bug #2303: TEST: Misc model changes
all changes made to db_model_vegbank.xml except for field to explicitly state no species. Not yet checked in, however. Michael Lee
02:18 PM Bug #2303: TEST: Misc model changes
Expert System is boolean, should be descriptive
Add Plot Rationale field: why was this plot sampled?
see also bug 230...
Michael Lee
02:47 PM Bug #2331: ensure NVC.doc standards doc matches what's in VegBank
This is the standards document that Michael went through and commented on places that didn't align well with VegBank Michael Lee
02:44 PM Bug #2331: ensure NVC.doc standards doc matches what's in VegBank
There were a few issues that were discovered.
"Practically speaking, these repeat visits (which should be document...
Michael Lee
02:36 PM Bug #2484 (Resolved): add min cover % and max cover % to constancy table
please Michael Lee
02:16 PM Bug #2483 (Resolved): Link into site the new searchable data dictionary (and glossary?)
We need a searchable data dictionary and glossary of terms. Perhaps the simplest thing would be to add a few tables ... Michael Lee
02:11 PM Bug #2481: Fix Backup Strategy: where backups go
colby emailed 6/28/06 about this. Michael Lee
10:12 AM Bug #2481 (Resolved): Fix Backup Strategy: where backups go
+++ This bug was initially created as a clone of Bug #2395 +++
We need to make sure that this backup is not just t...
Michael Lee
10:21 AM Bug #2478: Implement Nightly/Weekly Cron (SQL)
OK, everything that can be done via SQL, including the VERY IMPORTANT VACUUM ANALYZE is now accomplished by "periodic... Michael Lee
09:03 AM Bug #2478: Implement Nightly/Weekly Cron (SQL)
(In reply to comment #0)
Some of the following is done, some of it can be done with SQL, some of it can't.
> The URL...
Michael Lee
09:00 AM Bug #2478 (Resolved): Implement Nightly/Weekly Cron (SQL)
The URL describes tasks needed for nightly, or perhaps weekly for VegBank. MLee should write the SQL that accomplish... Michael Lee
10:21 AM Bug #2482 (Resolved): automate caching of data for homepage -- replace ant function
We need to automate the caching of data that is displayed on the homepage with a cron job. Currently, the caching is... Michael Lee
10:13 AM Bug #2395: Fix Backup Strategy -- delete extra backups from time to time
This bug has been split. This portion of the bug now deals only with removing extra old backups in the /usr/vegbank/... Michael Lee

06/27/2006

11:41 AM Bug #2477 (New): Login forwarding problems
I registered as a new user. Then I went to "submit data" link, put a file name into the box and pressed "continue." ... Michael Lee
11:32 AM Bug #2476 (Resolved): when you try to submit data without certification, you can get to the upload screen
When uses click the "submit data" button on the header of any page in VegBank, they should be checked for certificati... Michael Lee
11:30 AM Bug #2475 (Resolved): If not certified, but logged in, should prompt to certify, not login
when you try to load plots or do other certified-only activities, the system says:
"The page you tried to access r...
Michael Lee
11:28 AM Bug #2474 (Resolved): After users register, they need to know it worked
when new users register at http://aldo.vegbank.org/vegbank/forms/RegisterNewUser.jsp
they are taken to the home page...
Michael Lee

06/23/2006

11:02 AM Bug #2403: add accessionCode to more tables in db
not all tables, just more tables Michael Lee
11:01 AM Bug #2404: Evaluate: Let users define bounding box with Google Maps, then show plots in that area
now working in IE! Michael Lee
11:48 PM Bug #2404: Evaluate: Let users define bounding box with Google Maps, then show plots in that area
I just added a few features to this:
http://aldo.vegbank.org/vegbank/views/plot-query-bymap.jsp
but unfortunately it ...
Michael Lee
11:09 PM Bug #2404: Evaluate: Let users define bounding box with Google Maps, then show plots in that area
This is done. Converting this bug into an evaluation bug of the completed form.
you can link to it from the front p...
Michael Lee
10:59 PM Bug #2436: Evaluate: Map plots with one click from plot-result-set
This is done. I convert this bug into an "Evaluate" bug where someone should make sure that this does as we want it ... Michael Lee

06/22/2006

04:58 PM Bug #2436: Evaluate: Map plots with one click from plot-result-set
I have answered the bits from above as following:
100 plots are mapped at a time. After 100 plots are mapped, the i...
Michael Lee
02:09 PM Bug #2436: Evaluate: Map plots with one click from plot-result-set
This is mostly done, but there are a few issues outstanding.
1) how many plots can permissibly be mapped?
2) shoul...
Michael Lee
02:26 PM Bug #2468 (Resolved): show error estimates of mapped plots
this is now possible in FF via the function VbGMarkCircularAccuracy(lat,lng,degreesErr,metersErr,map) in
VbGoogleMa...
Michael Lee
11:19 AM Bug #889: XML READY: Load database:Peet - Rockies-700 (cover only for <1m tall)
http://vegbank.org/get/std/project/10191
the data are loaded into VegBank!
Michael Lee
11:17 AM Bug #2444: user passwords are stored in clear text in the database
I don't know how to do this. I have snooped around the postgresql site to try and figure it out. It seems we need t... Michael Lee

06/21/2006

10:13 AM Bug #1861: fix denorm SQL approach
Another note about my comment from a few minutes ago. I also tried the denorm-nullsonly.sql file which takes less ti... Chad Berkley
10:06 AM Bug #1861: fix denorm SQL approach
I got a trigger working with the transaction system in vegbank. The problem now is that the subselect based updates ... Chad Berkley

06/20/2006

01:38 PM Bug #1861: fix denorm SQL approach
I've attempted to create a trigger system for updating the denorm fields when observation is updated. This seems to ... Chad Berkley

06/14/2006

01:43 PM Bug #1861: fix denorm SQL approach
the SQL that denormalizes fields is in:
vegbank/src/sql/denorm
2 files, one has SQL to update everything, and one jus...
Michael Lee
12:05 PM Bug #2457 (New): Link to list of certified users, renew embargo screens
in general, some pages are orphaned in the system and need to be linked to directly somehow. Michael Lee

06/13/2006

10:17 AM Bug #2405: Logout is broken
This actually works with a normal install. It just doesn't work on vegbank.org. I have successfully logged out and ... Chad Berkley
10:07 AM Bug #833: Management page needed with full ability to modify accounts
The delete plots functionality was already implemented, but you had to type in the plot ids of the plots you wanted t... Chad Berkley

06/12/2006

10:59 AM Bug #833: Management page needed with full ability to modify accounts
you can now do the actions with the X next to them.
X view all users
X certify users
delete plots
X delete users
res...
Chad Berkley

06/08/2006

12:39 PM Bug #2434: Profiling of XML Loader's Performance
Typo fixes for the last comment...oops.
(In reply to comment #5)
1) **Change the** SAX parser parse and load per ob...
Chad Berkley
12:34 PM Bug #2434: Profiling of XML Loader's Performance
I've been looking at possible ways to speed the loader up even more than we already have for the last 2 days. Basica... Chad Berkley

06/07/2006

01:24 PM Bug #2434: Profiling of XML Loader's Performance
I've finished my analysis of the observation insertion part of LoadTreeToDatabase.insertVegbankPackage(). It is stil... Chad Berkley
 

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