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From 06/15/2011 to 07/14/2011

07/15/2011

08:15 PM Bug #5442: View->Automate Layout doesn't work in kepler-2.3 branch
Fixed by 27944-27947 for 2.3.
But not yet fixed for 2.3.0 test release.
Derik Barseghian
06:56 PM Bug #5442 (Resolved): View->Automate Layout doesn't work in kepler-2.3 branch
A bunch of ptolemy jars aren't added to the classpath when using the kepler-2.3 branch. This causes at least one prob... Derik Barseghian

07/14/2011

03:21 PM Bug #5403: Improve the performance of the workflow archiving data from dataturbine to metacat
What is the performance difference? What is the difference in workflow run times now with provenance on compared to ... Matt Jones
12:30 PM Bug #5403: Improve the performance of the workflow archiving data from dataturbine to metacat
Dan made significant improvements to this workflow's performance.
Good enough to close this bug?
Derik Barseghian
01:08 PM Bug #5129: adding and removing configuration properties could be made easier
Two more issues:
1) if you start kepler-2.2.0 for the first time, your File menu will have 1 Open... option (can open...
Derik Barseghian
12:26 PM Bug #4047: Remove Component doesn't work
'Remove component' is apparently no longer an option, so closing. Derik Barseghian
12:22 PM Bug #4967: Disallow dragging romls, workflowRuns, etc onto canvas
This no longer happens. Derik Barseghian

07/13/2011

02:24 PM Bug #5419: Cannot open KARs saved in 2.1.0 suites in 2.2.0 in relaxed mode because ptolemy module changed names
fixed at r27911 (and r27907). Derik Barseghian
02:22 PM Bug #5441: no 'work will be lost' warning when accepting a patch via Module Manager
fixed at r27918 and in 2.3 branch at r27919 Derik Barseghian
01:04 PM Bug #5441 (Resolved): no 'work will be lost' warning when accepting a patch via Module Manager
If you check for, find, and accept an available patch via the Module Manager, kepler is restarted with no warning tha... Derik Barseghian

07/12/2011

02:22 PM Bug #5440 (Resolved): special checkout behavior for hardcoded ptolemy module names
org.kepler.build.Get.getModule(Module module) has special behavior when it comes across the modules with names: ptole... Derik Barseghian
04:04 AM Bug #5438: missed menubar and misformed buttons without text
Yes, that it is an option, but I do not prefer.
The official cause can be found here:
http://blogs.oracle.com/henrik...
unknown unknown
07:23 PM Bug #5439: file parameter ignores directory
T
The issue here is that under Mac OS X, we are now using FileDialog instead of JFileChooser
because FileDialog has t...
Christopher Brooks
06:56 PM Bug #5439: file parameter ignores directory
This looks like a problem with my recent FileDialog changes for the Mac.
I'm working on a fix now
Christopher Brooks

07/11/2011

04:10 PM Bug #5439 (Resolved): file parameter ignores directory
Choosing a file /tmp/file.txt gets replaced with $KEPLER/file.txt. In Ptolemy it's replaced with $CWD/file.txt. Daniel Crawl
02:33 PM Bug #5438: missed menubar and misformed buttons without text
I would try Sun/Oracle's JDK instead of openjdk. Daniel Crawl
01:11 PM Bug #5438: missed menubar and misformed buttons without text
It´s native on just starting kepler. Nothing to do other. And it is always there.
I´ve wondering that I am the first ...
unknown unknown
12:53 PM Bug #5438: missed menubar and misformed buttons without text
How does this error occur? e.g., starting Kepler?
I found a similar exception to the one shown in your console outp...
Daniel Crawl
07:22 AM Bug #5438: missed menubar and misformed buttons without text
It´s worser than I´ve thought.
The getting started guide shows that there must be a menubar with FILE... and so on a...
unknown unknown
06:58 AM Bug #5438 (Resolved): missed menubar and misformed buttons without text
Like the summary says.
I will attach a screenshot that shows that the buttons "Search","Advanc.." and "Sources" are ...
unknown unknown

07/09/2011

06:33 PM Bug #5186: Publish example KARs to repository
I documented and uploaded 4 example REAP KARs right after 2.2 shipped. This is still sparse, I encourage others to pu... Derik Barseghian
05:59 PM Bug #5424: see if it's worthwhile to upgrade hsql from 1.8
see bug#5429 for more discussion Derik Barseghian

07/08/2011

03:37 PM Bug #5433: use 1024m instead of 512m for reporting suite
Just increasing to 768m is enough. In fact the one set of tests i did (below) surprisingly shows this as having bette... Derik Barseghian
06:15 PM Bug #5413: large run deletion via the WRM with hsql provenance store takes a very long time and no gui feedback
No longer blocking during run-delete, just showing the wait cursor at r27799. Derik Barseghian

07/07/2011

04:22 PM Bug #5429: improve default provenance store performance
On the issue of max data file size (hsqldb.cache_file_scale=1), we are currently limited to 2gb. I've reached this wi... Derik Barseghian
05:25 PM Bug #5429: improve default provenance store performance
Did more research yesterday and found some changes to hsqldb post 1.8 that sound valuable wrt our shutdown performanc... Derik Barseghian
02:21 PM Bug #5320: Get "could not find entity 1876 in parameter table" when run the dataturbineToMetacat workflow
Fixed. Daniel Crawl
12:46 PM Bug #5090: Report Layout interface is confusing wrt locking and switching to old layouts
fixed this at r27806
(In reply to comment #2)
> If the layout is empty, the warning dialog about discarding the curr...
Derik Barseghian
11:26 AM Bug #5437 (Resolved): provenance hsqldb database doesn't behave as though it's properly shutdown when in server mode
When using server-mode hsqldb provenance, kepler shutdown goes very fast, the .log file remains, and subsequent keple... Derik Barseghian

07/02/2011

06:19 PM Bug #5413: large run deletion via the WRM with hsql provenance store takes a very long time and no gui feedback
Some progress on this with r27791, the wait cursor will now display over WRM during deletion. Everything still blocks... Derik Barseghian

06/30/2011

04:53 PM Bug #5435: passing string into a parameter for headless execution doesn't work
Take a look at
http://ptolemy.eecs.berkeley.edu/ptolemyII/ptIIfaq.htm#invoking%20Ptolemy%20II?
which gives hints. H...
Christopher Brooks
04:36 PM Bug #5435: passing string into a parameter for headless execution doesn't work
This also happens when trying to run from Ptolemy:
# $PTII/bin/ptolemy -x "xxx" ptparamx.xml
Change failed: <propert...
Daniel Crawl
04:08 PM Bug #5435 (New): passing string into a parameter for headless execution doesn't work
If you attempt to pass in a string to a Parameter for a headless execution, the value doesn't get used. An integer wo... Derik Barseghian
04:47 PM Bug #5436 (Resolved): KeplerConfigurationApplication does not show run exception
KeplerConfigurationApplication does not show exceptions that occur during workflow execution.
To reproduce:
kep...
Daniel Crawl
03:19 PM Bug #5434: run-kar result from headless kepler.sh execution doesn't contain report artifacts
fixed at r27772. Derik Barseghian
07:03 PM Bug #5434 (Resolved): run-kar result from headless kepler.sh execution doesn't contain report artifacts
This thread:
http://lists.nceas.ucsb.edu/kepler/pipermail/kepler-users/2011-June/002541.html
prompted me to look i...
Derik Barseghian

06/28/2011

03:28 PM Bug #5433 (Resolved): use 1024m instead of 512m for reporting suite
Kepler has a max memory setting of 512m by default. Increasing this to 1024m when using the reporting suite enables u... Derik Barseghian
03:16 PM Bug #5429: improve default provenance store performance
After a lot more testing with the cache_file_scale and hsqldb.cache_scale options, and for the GDD workflow processin... Derik Barseghian
12:32 PM Bug #5432 (Resolved): 2.2 mac installer contains 2 copies of everything
There is a zip file in each module containing the contents of the module.
I would not create a new installer for 2...
Daniel Crawl

06/25/2011

06:05 PM Bug #5429: improve default provenance store performance
We're not explicitly doing a SHUTDOWN of the provenance DB when we quit Kepler, and "the log is never reused unless t... Derik Barseghian
05:51 PM Bug #5430 (Resolved): problems with multiple instances of kepler
If you start two instances of kepler running at the same time on one machine, and quit the first instance, the second... Derik Barseghian

06/24/2011

02:40 PM Bug #4827: RExpression does not handle matrix tokens correctly.
I just re-tested this with the latest trunk. The problem is still there. Tom Parris
01:13 PM Bug #5429 (New): improve default provenance store performance
Currently there can be some big performance penalties when using kepler with provenance turned on (by default using h... Derik Barseghian

06/23/2011

01:59 PM Bug #5090: Report Layout interface is confusing wrt locking and switching to old layouts
If the layout is empty, the warning dialog about discarding the current layout should not appear. (There's no layout ... Daniel Crawl

06/22/2011

01:42 PM Bug #5407: wrm/tagging have errors when starting with provenance turned off
Fixed by r27756 and r27758 Derik Barseghian
12:43 PM Bug #5129: adding and removing configuration properties could be made easier
The hack included at r26897 to move old configuration xml files out of the way for the first launch of kepler-2.2.0 i... Derik Barseghian

06/21/2011

04:07 PM Bug #5320: Get "could not find entity 1876 in parameter table" when run the dataturbineToMetacat workflow
The error message is gone during my testing. Jing Tao
03:41 PM Bug #5158: remaining provenance issues for 2.1 release
Upgrade process done. Daniel Crawl
01:34 PM Bug #5302: module_dependencies column defined too short
Now using "text" type where supported. Daniel Crawl

06/20/2011

04:30 PM Bug #5090: Report Layout interface is confusing wrt locking and switching to old layouts
I simplified this quite a bit some time ago and got rid of the lock edit mode button. It could be improved further th... Derik Barseghian
04:25 PM Bug #5091: Dragging and dropping report layout items NPEs
This no longer happens. Derik Barseghian
04:00 PM Bug #4247: Application menu items sometimes disappear on OS X
closing, this was just left open as a reminder. Derik Barseghian
11:20 AM Bug #5426: workflow lsid changes when running from command line
Attaching example workflow. Daniel Crawl
11:18 AM Bug #5426 (Resolved): workflow lsid changes when running from command line
There are two problems that occur when running a workflow from the command line and specifying a non-default paramete... Daniel Crawl
10:41 AM Bug #5425 (New): error when running -nocache and no .kepler
The following occurs when running from the command line, specifying -nocache, and there's no .kepler:
[null] ...
Daniel Crawl

06/17/2011

04:54 PM Bug #5320: Get "could not find entity 1876 in parameter table" when run the dataturbineToMetacat workflow
This should be fixed in r27746. Jing, please test. Daniel Crawl

06/16/2011

11:00 AM Bug #5410: provenance data is not flushed to HSQL database before Kepler quit.
Fixed in r27741. Daniel Crawl
06:23 PM Bug #5424 (Resolved): see if it's worthwhile to upgrade hsql from 1.8
Currently hsql is at v2.2, but we're still using 1.8. There are a number of benefits to upgrading to 2.2. Dan and I d... Derik Barseghian
 

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