Kepler

11/28/2012

03:15 PM Bug #5725: Save dialog's folder drop-down menu crashes kepler in OS X 10.8 w/ 64-bit java 1.6.0_37-b06-434-11M3909

I have been able to reproduce the error on 10.8 using Java 1.6. The issue appears be related to the AWT. Here is the ... Charles Cowart

11/27/2012

06:04 PM Bug #5725: Save dialog's folder drop-down menu crashes kepler in OS X 10.8 w/ 64-bit java 1.6.0_37-b06-434-11M3909

I wasn't able to get the crash to occur with a simple test program (attached).
I now notice our crash doesn't always... Derik Barseghian

05:53 PM Bug #5725: Save dialog's folder drop-down menu crashes kepler in OS X 10.8 w/ 64-bit java 1.6.0_37-b06-434-11M3909

test case does not cause crash Derik Barseghian

04:45 PM Bug #5732: EML 2.1.1 option should be added to metacat data sources in kepler

.kepler has to be deleted because the service list gets serialized to a java object in the cache dir. Derik Barseghian

04:42 PM Bug #5732: EML 2.1.1 option should be added to metacat data sources in kepler

Derik added eml 2.1.1 to the configuratin.xml in both ecogrid and reporting modules. However, we still can't see them... Jing Tao

11/26/2012

05:07 PM Bug #5725: Save dialog's folder drop-down menu crashes kepler in OS X 10.8 w/ 64-bit java 1.6.0_37-b06-434-11M3909

I suggest creating a small test case and submitting a bug report to both Apple and Oracle. See http://www.java2s.com... Christopher Brooks

04:51 PM Bug #5727: saving workflow changes canvas center

There are some similar issues in vergil, so I'll take this bug, fix vergil and
then reassign it to Derik after I fix... Christopher Brooks

03:22 PM Bug #5625: create kepler documentation for 2.4

user manual documentation is also checked into kepler trunk at common module. closing the bug. jianwu jianwu

03:15 PM Bug #5715: Actor Reference documentation

The actor reference manual is at https://code.kepler-project.org/code/kepler-docs/trunk/outreach/documentation/shipp... Daniel Crawl

02:57 PM Bug #5397: "./kepler.sh -runwf -nogui workflow.xml" doestn't work if the user is logged out on Mac

I did a little big further changes at version 31136. Now no exception stack trace will be displayed.
I still see a ... jianwu jianwu

12:07 PM Bug #5397: "./kepler.sh -runwf -nogui workflow.xml" doestn't work if the user is logged out on Mac

KeplerOSXExtension prints the error message, but still executes the workflow. I updated the error message to be more ... Daniel Crawl

02:47 PM Bug #5745: "./kepler.sh -runwf -nogui -nocache workflow.xml" has error message after execution.

it works for me. closing it. jianwu jianwu

12:15 PM Bug #5745: "./kepler.sh -runwf -nogui -nocache workflow.xml" has error message after execution.

Fixed, reassigning to Jianwu to verify. Daniel Crawl

01:39 PM Bug #4978: Create additional 'module' property for any menu entries that are inserted by non-core modules

In the last 2.4 meeting, we decided to fix this in a later release. Daniel Crawl

11/20/2012

06:08 PM Bug #4995: ant installer fails under Linux

build.xml lists an installer target that invokes make-mac-installer which
fails under linux:
[make-macosx-installer]... Christopher Brooks

01:37 PM Bug #5745 (Resolved): "./kepler.sh -runwf -nogui -nocache workflow.xml" has error message after execution.

I saw the same message at mac and linux:
rm -rf ~/.kepler; ./kepler.sh -runwf -nogui -nocache outreach/workflows/dem... jianwu jianwu

01:33 PM Bug #5397: "./kepler.sh -runwf -nogui workflow.xml" doestn't work if the user is logged out on Mac

I still see the similar error message at Kepler trunk. Re-opening...
./kepler.sh -runwf -nogui -nocache outreach/wor... jianwu jianwu

11/16/2012

05:58 PM Bug #5625: create kepler documentation for 2.4

Dan and I created user manual documentation 2.4 at kepler doc trunk r1412. jianwu jianwu

11/14/2012

05:29 PM Bug #5714: user manual documentation for 2.4.

I'm closing this since bug #5625 has the comments for the user manual. Daniel Crawl

05:27 PM Bug #5625: create kepler documentation for 2.4

Jianwu and I have updated the documentation, including:
- references and screenshots of CT -> Continuous
- I didn't ... Daniel Crawl

03:42 PM Bug #5677: SDF Iterations now defaults to AUTO

Jianwu and I have updated the Kepler documentation for the iterations parameter. Daniel Crawl

03:37 PM Bug #5713: getting-started-guide documentation for Kepler 2.4

Jianwu and I updated the getting started guide for 2.4. Daniel Crawl

11/13/2012

04:36 PM Bug #5669: replace ProjectLocator.findKeplerModulesDir() with something more robust.

With changes in r31074, the kepler dir is set based on build.xml location. It won't start searching from ant.jar anym... jianwu jianwu

04:03 PM Bug #5669: replace ProjectLocator.findKeplerModulesDir() with something more robust.

I tried today (r31073) on linux to use 'ant run' at another directory, such as: ant -f ~/kepler/repository/kepler-tru... jianwu jianwu

11/08/2012

03:54 PM Bug #5732: EML 2.1.1 option should be added to metacat data sources in kepler

Enabled querying for eml 2.1.1 packages at r31055.
To close this bug, test querying for and using an eml 2.1.1. data... Derik Barseghian

02:29 PM Bug #5732 (Resolved): EML 2.1.1 option should be added to metacat data sources in kepler

EML 2.1.1 option should be added to metacat data sources in kepler Derik Barseghian

11/07/2012

09:35 AM Bug #5726: actor names ending in digit renamed on canvas

Christopher wrote:
> Is this a duplicate of bug #4049 at
> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4049
>... Daniel Crawl

11/06/2012

08:39 PM Bug #5727: saving workflow changes canvas center

Try looking at these changes in the ptII tree:
2012-09-27 12:34 cds
* [r64721] /trunk/ptolemy/vergil/basic/BasicGr... Christopher Brooks

08:33 PM Bug #4049: Import actor that already exists appends strange numbering scheme

See also https://chess.eecs.berkeley.edu/bugzilla/show_bug.cgi?id=61 and
maybe http://bugzilla.ecoinformatics.org/sho... Christopher Brooks

08:32 PM Bug #5726: actor names ending in digit renamed on canvas

Is this a duplicate of bug #4049 at
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4049
See also
https://chess.ee... Christopher Brooks

05:53 PM Bug #5725: Save dialog's folder drop-down menu crashes kepler in OS X 10.8 w/ 64-bit java 1.6.0_37-b06-434-11M3909

This doesn't happen in 10.7, with java version 1.6.0_35 or 1.6.0_37. Derik Barseghian

05:45 PM Bug #5485: standalone Module Manager can break Kepler app ability to startup

Yep, I tested this awhile ago and Dan's new warning message seems good. Derik Barseghian

09:36 AM Bug #5598: parameters appear as white boxes instead of dots

Conceptually, one possible fix is already available, as I have documented in the comments to bug 5266. It would invol... Sean Riddle

11/05/2012

05:25 PM Bug #5485: standalone Module Manager can break Kepler app ability to startup

Hi Derik,
Did you test Dan's update? Please update its status. Thanks. jianwu jianwu

05:21 PM Bug #5598: parameters appear as white boxes instead of dots

Hi Sean,
Any updates on this bug and bug 5266? jianwu jianwu

10/30/2012

07:18 PM Bug #5725: Save dialog's folder drop-down menu crashes kepler in OS X 10.8 w/ 64-bit java 1.6.0_37-b06-434-11M3909

Yeah. I've been googling, I saw a few people w/ somewhat similar sounding issues -- one filed a bug w/ apple, and ano... Derik Barseghian

05:38 PM Bug #5725: Save dialog's folder drop-down menu crashes kepler in OS X 10.8 w/ 64-bit java 1.6.0_37-b06-434-11M3909

If non-JNI Java code crashes the JVM, then it is typically a bug in the JVM, not the Java code. I suggest searching ... Christopher Brooks

05:09 PM Bug #5725: Save dialog's folder drop-down menu crashes kepler in OS X 10.8 w/ 64-bit java 1.6.0_37-b06-434-11M3909

Doesn't happen in 10.8 w/ Kepler 2.3 either, which doesn't include r28887:
--------
Under Mac OS X, use java.awt.File... Derik Barseghian

04:24 PM Bug #5725: Save dialog's folder drop-down menu crashes kepler in OS X 10.8 w/ 64-bit java 1.6.0_37-b06-434-11M3909

Doesn't happen in:
os X 10.6.8 w/ java 1.6.0_35
win7 w/ java 1.7.0_06
ubuntu w/ java 1.6.0_26 Derik Barseghian

03:46 PM Bug #5712: illegal option chmod error during Kepler startup

Fixed at r30991. sensor-view-utils-1.0.jar in sensor-view suite needed to be updated to include change to LocalExec. Derik Barseghian

12:59 PM Bug #5712: illegal option chmod error during Kepler startup

I still get this error message when starting e.g. the sensor-view suite on trunk head. Derik Barseghian

12:37 PM Bug #5727 (Resolved): saving workflow changes canvas center

The first time a workflow is saved, the center of the canvas changes. The actors originally in the center are now in ... Daniel Crawl

12:04 PM Bug #5726 (Resolved): actor names ending in digit renamed on canvas

There are several actors in the biokepler suite with names ending in digits: yn00, run-mummer1, primer3. When they a... Daniel Crawl