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From 10/09/2011 to 11/07/2011

11/08/2011

05:43 PM Bug #4356: knb website query result shows old version of a document
Ben and I tested the updating and query on both forced replication and timed replication between two metacats. We cou... Jing Tao
04:07 PM Bug #4356: knb website query result shows old version of a document
I used a morpho to create a eml document and insert it to metacat. Then i did a search and records was added to xml_q... Jing Tao

11/04/2011

04:33 PM Bug #5533 (Resolved): Sanpark skin main page has login issue
Hi Jing
Yes I see that it works on firefox the problem is that all our staff have to use IE So is there a way to f...
Jing Tao
03:18 PM Bug #5532 (Resolved): Use strict build tag strategy for 2.0.0 release
Currently Metacat relies on a number of external projects and repositories. We should take this opportunity to finali... ben leinfelder
10:26 AM Bug #5531 (Resolved): Remove/make optional the DataONE MN registration that occurs during Metacat configuration
Right now when I [re]configure Metacat I hit the DataONE CN in an attempt to register myself as a MN. This should be ... ben leinfelder

11/01/2011

02:10 PM Bug #5499: citation format odd for metacat data sets
added to EML project and updated the Metacat build to pull from that tagged style update. ben leinfelder
01:57 PM Bug #5499: citation format odd for metacat data sets
Close. All that needs to change is delete #3 -- if BOTH are provided, only list the individualName and omit the orga... Matt Jones
12:43 PM Bug #5499: citation format odd for metacat data sets
After looking more closely at the code, I think we already have what you propose -- it just depends on the content of... ben leinfelder
05:21 PM Bug #2495: Charset bug: Internationalization
Moving this to 2.0.0.
Also, I think relying on the XML-declared encoding is a much safer (easier) bet than inspectin...
ben leinfelder
05:13 PM Bug #5519: Replicated data files are 0 bytes
After installing Metacat 1.9.5 on fred.msi.ucsb.edu I was able to see the failure point. It was something that I fixe... ben leinfelder

10/31/2011

02:27 PM Bug #5530: Sanparks skin shows update and delete action when user public reads a FGDC package
also see: http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5394 ben leinfelder
02:21 PM Bug #5530 (Resolved): Sanparks skin shows update and delete action when user public reads a FGDC package
Here is an email from Judith:
Hi Jing
I have successfully uploaded a number of GIS layers What concerns me is
th...
Jing Tao
02:27 PM Bug #5394: FGDC interface does not correctly show controls and permission settings
consolidating into one bug ben leinfelder
02:18 PM Bug #5519: Replicated data files are 0 bytes
There's no difference between 1.9.5 tag and trunk for the ReplicationService.handleGetDataFileRequest() method -- may... ben leinfelder
02:06 PM Bug #5519: Replicated data files are 0 bytes
Now with BOTH servers using Apache certificate/SSL mechanisms the replication is still successful.
bespin.nceas.ucsb....
ben leinfelder
01:25 PM Bug #5519: Replicated data files are 0 bytes
Switching bespin.nceas.ucsb.edu to use Apache for the SSL handling still left the data replication working as expecte... ben leinfelder
12:34 PM Bug #5519: Replicated data files are 0 bytes
I set up one-way replication from bespin.nceas.ucsb.edu --> fred.msi.ucsb.edu.
Using the Tomcat-only certificate gene...
ben leinfelder
08:40 AM Bug #5499: citation format odd for metacat data sets
No, I don't think that's quite right. If a Creator contains an individualName, use that and not the organization. If ... Matt Jones

10/28/2011

04:25 PM Bug #5499: citation format odd for metacat data sets
Does there need to be an XSLT parameter that allows different skins to specify whether they want organizations treate... ben leinfelder
04:21 PM Bug #5499: citation format odd for metacat data sets
Okay, what's the final decision here?
We have givenName, surName and an organizationName. It sounds like the citatio...
ben leinfelder
02:48 PM Bug #5526 (Resolved): final test issue
One final test, sorry for the spam. Matt Jones
02:46 PM Bug #5525: test issue again
Test bug. Matt Jones
02:36 PM Bug #5525 (Resolved): test issue again
Another test to be ignored. Matt Jones
02:36 PM Bug #5524: test issue
Test bug. Closing. Matt Jones
02:34 PM Bug #5524 (Resolved): test issue
Please ignore -- this is a test issue. Matt Jones
02:23 PM Bug #5522: download linked KNB data and convert links in EML to ORE packages
Creation of SystemMetadata when no SystemMetadata is provided (i.e. any object creation not through the DataONE API) ... Chris Jones
02:06 PM Bug #5522 (New): download linked KNB data and convert links in EML to ORE packages
The KNB data sets, and EML data in general, represent linkages to data as online/url linkages in EML documents. When... Matt Jones
02:16 PM Bug #5523 (Resolved): setting authoritative MN and rightsHolder for KNB data on conversion
When EML and data in the NCEAS and LTER metacat is converted to use in the new KNB MN, we need to generate system me... Matt Jones
01:28 PM Bug #5515: change version to 2.0.0 in prep for release
db version scripts and properties are updated to 2.0.0 ben leinfelder
01:23 PM Bug #3815: Ampersand character not correctly encoded
I only see delNormalize() being called from the deleteData() function in register-dataset.cgi -- but perhaps similar ... ben leinfelder
01:11 PM Bug #3815: Ampersand character not correctly encoded
The specific example looks to have its origins in delNormalize (sic) within register-dataset.cgi -- the first regex o... Shaun Walbridge
10:23 PM Bug #3815: Ampersand character not correctly encoded
Using the Java MetacatClient API to insert a document with & also worked fine (no additional encoding of the & sy... ben leinfelder
08:23 PM Bug #3815: Ampersand character not correctly encoded
Using the dev skin to load an XML document with an ampersand encoded as: & kept the character intact. To me, this... ben leinfelder
01:17 PM Bug #4907: Replication error stops insert/update of valid EML document
Added clearer error handling when replication lock requests cannot be gotten ben leinfelder
01:01 PM Bug #4083: Metacat doesn't declare XML document encoding
For incoming XML files, Metacat will inspect the encoding specified in the prolog and use that if found; defaulting t... ben leinfelder
12:48 PM Bug #2236: metacat parser allows eml with missing content
I tried inserting this document as is: it was fine because it validates against the 2.0.1 schema.
I tries modifying i...
ben leinfelder
07:41 PM Bug #5054: Unable to insert large EML documents and no error status returned
On first inspection, it appears that the request is coming into Metacat with no parameters set when I use the dev ski... ben leinfelder
07:00 PM Bug #5273: docs with inline-data allow invalid xml into metacat
I tried this with the attached inline.xml file that has an invalid unescaped ampersand in the inline section -- Metac... ben leinfelder
06:58 PM Bug #5273: docs with inline-data allow invalid xml into metacat
This file uses unescaped ampersand (&) in the inline data section. ben leinfelder

10/27/2011

04:05 PM Bug #5515: change version to 2.0.0 in prep for release
updated docs and the source tree to use tomcat6 rather than tomcat5.5 ben leinfelder
01:30 PM Bug #3811: Spatial caches should be backed up and restored
If someone wants to put the spatial cache in /var/metacat they will have to do it manually, then configure metacat (w... ben leinfelder
01:01 PM Bug #2084: Pathquery support for temporal search on date fields
Will exercise this during testing for release. ben leinfelder
06:59 PM Bug #5520 (Resolved): Create replication integration test suite
Replication integration tests should include:
-force replication between two servers -- A, B (write, update, delete)...
ben leinfelder
06:31 PM Bug #5519 (Resolved): Replicated data files are 0 bytes
We set up 2-way replication between PPBio and PELD (Brazilian Metacat instances) and have since seen that the replica... ben leinfelder

10/26/2011

04:30 PM Bug #2084: Pathquery support for temporal search on date fields
This should be in 2.0.0 since it is already in the trunk. The upgrade script is the only thing I am worried about -- ... ben leinfelder
04:11 PM Bug #5262: EML document owner can't read the document
Probably solution is to use Java's canonicalization routines to normalize the DN, as Ben has done on the DataONE DNs.... Matt Jones
03:59 PM Bug #5244: ldapweb.cgi shouldn't report ou=Account accounts since they're unusable
Need to check with Shaun if this is actually fixed. Matt Jones
03:54 PM Bug #4651: data packages losing data tables (and then finding them again)
Unable to replicate. Please reopen if more details emerge. Matt Jones
03:48 PM Bug #4442: Spatial indexing should not run and block metacat
Related to bug #3811. Matt Jones
03:47 PM Bug #5518 (In Progress): Track down the performance issue of metacat query.
Matt queried knb with the word "water". It took one minute and half. We need to figured out why it so slow. Jing Tao
03:46 PM Bug #3811: Spatial caches should be backed up and restored
Decided that its best to move these files to /var/metacat by default. Matt Jones
03:44 PM Bug #5234: Replication -- user does not have permission to update access rule for data file
In v1.9.5 we use a null replication user to perform replication (rather than the user_owner from the xml_documents ta... ben leinfelder
03:17 PM Bug #4900: LDAP referral connection timeout
Decided that #3 is not feasible since accounts may be in groups defined on various LDAP servers. ben leinfelder
01:20 PM Bug #5517 (Resolved): mark EcoGrid and Servlet APIs as deprecated
EcoGrid and Servlet APIs in metacat are being replaced (gradally) by the DataONE services. Mark these older APIs as ... Matt Jones
01:19 PM Bug #5516 (Resolved): continue updating user documentation
Documentation needs editing to describe new 2.0.0 features, including support for new DataONE APIs, deprecation of ol... Matt Jones
01:15 PM Bug #5515 (Resolved): change version to 2.0.0 in prep for release
To prepare for the release, change te version number to 2.0.0 for all documentation, including README, Sphinx docs, etc. Matt Jones
01:01 PM Bug #5288: Metacat got "java.lang.OutOfMemoryError: PermGen space" after new geoserver update
Not sure if there is an action here. Maybe add this information to the Metacat documentation/faq? Matt Jones
12:47 PM Bug #4083: Metacat doesn't declare XML document encoding
I think these encoding issues have been fixed by Ben in trunk, but we need to discuss it to see if anything further n... Matt Jones
12:38 PM Bug #1601: Metacat will add default value for optional parameter into eml 2 document
Marking as complete, because the read problem is fixed based on now reading original from disk. The insert problem i... Matt Jones
12:34 PM Bug #4275: Earthgrid REST API Implementation
Task now being handled via #5011 DataONE service API implementation. This original work on interfaces has been obsol... Matt Jones
12:17 PM Bug #5514: implement DataONE service API
Duplicate bug to #5011. Matt Jones
12:15 PM Bug #5514 (Resolved): implement DataONE service API
Support the new DataONE service API for interoperable data repositories:
http://mule1.dataone.org/ArchitectureDocs...
Matt Jones
12:10 PM Bug #5513 (Resolved): add support for DOI identifiers from EZID
DOI identifiers can be created through the EZID service run by the California Digital Library. See:
http://n2t.ne...
Matt Jones
 

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