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From 01/13/2014 to 02/11/2014

02/11/2014

02:19 PM Revision 8593 (metacat): Add the code to check if the docid contains the whitespaces in the handleInsertOrUpdate, handleUpload and handleInsertMultipartInsertAction methods.
Jing Tao
02:15 PM Revision 8592 (metacat)
Peter Slaughter
01:44 PM Feature #6415 (In Progress): Make all objects publicly readable on MN.publish()
Changed in the repo -- needs testing. ben leinfelder
10:25 AM Feature #6415 (Closed): Make all objects publicly readable on MN.publish()
Feb 11th, 2014
matt: I think it should be made public, including data, but as Jing indicated, we should give them fa...
ben leinfelder
01:43 PM Revision 8591 (metacat): make all package contents publicly readable when publishing with a DOI. https://projects.ecoinformatics.org/ecoinfo/issues/6415
ben leinfelder
01:29 PM Revision 8590 (metacat): Run syncAll in a single thread so admin config UI doesn't freeze
Peter Slaughter
11:05 AM Revision 8589 (metacat): Change CnodeService.archive() to no longer broadcast MN.archive() calls to all of the replica MNs of a pid, but rather broadcast MN.systemMetadataChanged().
Chris Jones
10:34 AM Feature #6416 (In Progress): Do not allow restrictive access control change to content with a DOI
ben leinfelder
05:02 PM Feature #6414 (Closed): Reject an insert or update/upload if the docid has white spaces in metacat api
I have a task to handle white spaces in the pids in the dataone production environment:
https://redmine.dataone.org/...
Jing Tao
04:17 PM Revision 8588 (metacat): allow utf-8 user first/last names to be used in responses for: login, logout, validatesession, getprincipals.
ben leinfelder

02/10/2014

03:38 PM Revision 8587 (metacat): minor formatting error
Peter Slaughter
03:33 PM Revision 8586 (metacat): Design document for the new Metacat statistics service
Peter Slaughter
11:52 AM Revision 8585 (metacat): Couple modifications:
-use "pid" throughout so as not to confuse docids and pids
-ensure any failures in the set do not prevent synching fo...
ben leinfelder

02/08/2014

04:41 PM Revision 8584 (metacat): use the metacatUI 1.4.5 that includes default metacat theme and context
ben leinfelder
04:17 PM Bug #6320 (Closed): Create a file-base authentication mechanism as the default method
Made AuthFile the default in metacat.properties. ben leinfelder
04:01 PM Revision 8583 (metacat): use AuthFile by default. https://projects.ecoinformatics.org/ecoinfo/issues/6320
ben leinfelder

02/07/2014

03:52 PM Bug #6403 (Closed): Command-line user management does not handle hashed passwords
Tested this on my localhost and it works with single quotes. ben leinfelder
03:12 PM Revision 8582 (metacat): swap git command order to avoid merge conflict messages.
ben leinfelder
02:41 PM Bug #6401 (Closed): Add the documentation about the file-based the authentication
Looks good now. ben leinfelder
02:40 PM Feature #6402 (Closed): Rebrand identity service
Now has logos and such.... ben leinfelder
02:20 PM Revision 8581 (metacat): adjust whitespace for consistency
ben leinfelder
02:20 PM Revision 8580 (metacat): include ID field as a minimum for indexing additional fields.
ben leinfelder
12:44 PM Task #6298 (Resolved): Call CN.setAccessPolicy() whenever access control rules are updated in Metacat
EML200SaxHandler updated to sync access policies of data pids if access rules updated in <additionalMetadata> Peter Slaughter
12:40 PM Revision 8579 (metacat): sync pids of <distribution><online> data objects with CN when their access rules change in EML 2.0.* <additionalMetadata>
Peter Slaughter
09:20 AM Revision 8578 (metacat): restrict the archived=false update to revisions that still have current entries in the xml_documents table.
ben leinfelder
05:36 PM Revision 8577 (metacat): tested the restore insertions - adjusted for FK constraints. I was able to delete a document locally, then restore it, then update the document with a new revision as expected.
ben leinfelder

02/06/2014

03:03 PM Revision 8576 (metacat): use 'with' query to find the most recent revision of an object that was archived. still want more feedback on the criteria.
ben leinfelder
02:42 PM Revision 8575 (metacat): Modified the usage.
Jing Tao
11:56 AM Revision 8574 (metacat): continue to work on the criteria for selecting documents to restore.
expanded the criteria for setting archived=false to include any revision that was already obsoleted_by somethign else. ben leinfelder
08:25 AM Revision 8573 (metacat): Minor edits on the new AuthFile features.
ben leinfelder
06:03 PM Task #6298 (In Progress): Call CN.setAccessPolicy() whenever access control rules are updated in Metacat
I like the approach in EML210SAXHandler for synching the data pids after the transaction has been committed. I think ... ben leinfelder

02/05/2014

02:18 PM Revision 8572 (metacat): correct syntax - add more criteria for selecting documents.
ben leinfelder
02:12 PM Revision 8571 (metacat): Add the AOOS as part of the label of the unaffiliated account.
Jing Tao
02:02 PM Revision 8569 (metacat): Add the documentation for the password file authentication.
Jing Tao
02:01 PM Revision 8568 (metacat): Add the configuration for the password file authentication.
Jing Tao
02:00 PM Revision 8567 (metacat): Move the authentication part forward a little bit.
Jing Tao
01:55 PM Revision 8566 (metacat): do not set sm.archived=true when generating system metadata for objects that come in via the old Metacat API.
ben leinfelder
01:50 PM Revision 8565 (metacat): draft of fix for erroneously archived documents - first discovered by LTER - but also applicable to other Metacat MNs that still use the Metacat API as of Jan 2014 CN changes.
ben leinfelder
01:24 PM Revision 8564 (metacat): Modify the usage message.
Jing Tao
09:43 AM Revision 8563 (metacat): Use a DN name for the group in the usage message printout.
Jing Tao
06:33 PM Revision 8562 (metacat): Add the screenshots for the password file authentication and ldap authentication.
Jing Tao

02/04/2014

02:55 PM Task #6407 (Closed): Add syncing test to metacat test suite
Peter Slaughter
02:35 PM Task #6299 (Resolved): Incorporate synch script as Metacat utility or upgrade routine
All pids for an auth MN can have their access policies checked and sync'd by clicking the 'Sync Access Policies' but... Peter Slaughter
02:29 PM Task #6297 (Resolved): Create MN->CN sync script
Peter Slaughter
02:28 PM Task #6298 (Resolved): Call CN.setAccessPolicy() whenever access control rules are updated in Metacat
Peter Slaughter
02:25 PM Revision 8561 (metacat): Fixed bug where sync'ing not working when CN had more access rules than MN
Peter Slaughter
02:24 PM Revision 8560 (metacat): Sync access policy between MN -> CN when access rules are updated in EML 2.1+ for data object
Peter Slaughter
04:35 PM Revision 8559 (metacat): Add a method to test an alias account in the ldap server.
Jing Tao
04:20 PM Bug #6405 (Resolved): Unable to authenticate with UCNRS referral account
The issue was not in the authentication. It was in the method getUserInfo. In the getUserInfo method, it used a filte... Jing Tao
04:00 PM Revision 8557 (metacat): Added a footer to the identity management config pages
Lauren Walker

02/03/2014

03:35 PM Revision 8556 (metacat): Remove code to add the organzation in the search filter. This is not necessary since we use the dn as the search base. The code was not actually used but caused some problem.
Jing Tao
02:56 PM Revision 8555 (metacat): use v2.4.0 for documentation and upgrade scripts.
ben leinfelder
02:53 PM Revision 8554 (metacat): correctly include stacktrace for error debugging.
ben leinfelder
02:52 PM Revision 8553 (metacat): can only log events with a valid localId.
ben leinfelder
02:51 PM Revision 8552 (metacat): return null if there is no existing SolrDoc for the given pid.
ben leinfelder
12:11 PM Bug #6405 (Resolved): Unable to authenticate with UCNRS referral account
Running the JUnit test:... ben leinfelder
09:30 AM Revision 8551 (metacat): Use the default metacatui theme to replace the skin name.
Jing Tao
09:27 AM Revision 8550 (metacat): use https for the new EZID api url.
ben leinfelder

01/31/2014

03:18 PM Bug #6322: Ensure lock is obtained prior to calls to Hazelcast IMap.put()
It seems to me that we should protect against this by creating a wrapper function rather than calling hz.put() direct... Matt Jones
02:19 PM Bug #6322: Ensure lock is obtained prior to calls to Hazelcast IMap.put()
I see quite a few hzSystemMetadata.put() calls without locks. And there are some comments like this:... ben leinfelder
03:09 PM Revision 8549 (metacat): Add a note to let users know where to run the script.
Jing Tao
02:54 PM Bug #6403: Command-line user management does not handle hashed passwords
I added note to let user know that the hashed password should be surround by single quotes. Jing Tao
02:43 PM Bug #6403 (In Progress): Command-line user management does not handle hashed passwords
ben leinfelder
02:42 PM Bug #6403: Command-line user management does not handle hashed passwords
I confirmed that the script doesn't like the "$" as a part of the argument. It will work if we remove the dollar sign... ben leinfelder
02:42 PM Bug #6403: Command-line user management does not handle hashed passwords
I dug around and found that the shell script decoded the bcrypt hash code. If the input (argument) is $2a$04$csilPspP... ben leinfelder
02:39 PM Bug #6403 (Closed): Command-line user management does not handle hashed passwords
From original ticket in the identity service redmine instance (https://projects.nceas.ucsb.edu/nceas/issues/862):
...
ben leinfelder
02:49 PM Revision 8548 (metacat): Add a note to let user know he/she should use single quotes to surround the hashed password.
Jing Tao
02:48 PM Bug #6306: During the upgrading metacat to 2.3.0, a user can see a message saying the index schema was changed even though he didn't
Reminder: for 2.4.0, I changed the schema.xml to use a copy from the metacat-index project. I need to add this hash t... ben leinfelder
02:46 PM Bug #6401: Add the documentation about the file-based the authentication
Jing will add to the existing section in configuration.rst and also authinterface.rst. Then I'll go over it. We shoul... ben leinfelder
11:09 AM Bug #6401 (Closed): Add the documentation about the file-based the authentication
In the next release, metacat will use the file-based the authentication as the default authentication mechanism. We n... Jing Tao
02:35 PM Revision 8547 (metacat): edit some of the user management phrases. use UTF-8 for all returned XML. https://projects.ecoinformatics.org/ecoinfo/issues/6320
ben leinfelder
11:55 AM Feature #6402 (Closed): Rebrand identity service
Include logos of KNB, DataONE, Kepler and GoA Lauren Walker
10:43 AM Feature #6285 (Closed): Handle EML singleDateTime field in SOLR index
Added the application-context fiels for all eml versions to our local metcat-index project with the new singleDateTim... ben leinfelder
10:41 AM Revision 8545 (metacat): index singleDateTime value into both begin and end date fields in solr. https://projects.ecoinformatics.org/ecoinfo/issues/6285
ben leinfelder
10:34 AM Feature #6346 (Resolved): Make # READ events available in SOLR index
Note that this uses our own copy of the solr schema.xml instead of the version offered by the DataONE library. I thin... ben leinfelder
10:59 PM Story #6276: Update to use new EZID API URL
Ben -- I think we need to send a notice about this out to metacat-dev, both making it clear that this feature is now ... Matt Jones

01/30/2014

03:13 PM Revision 8543 (metacat): Add the code to dispaly the label for the organization selection.
Jing Tao
02:48 PM Revision 8541 (metacat): Read the organization label and name from a hash.
Jing Tao
02:47 PM Revision 8540 (metacat): Use an array of a hash to keep the orgName/orgLabel pair.
Jing Tao
01:26 PM Story #6276 (Resolved): Update to use new EZID API URL
updated the metacat.properties. new URL seems to be active already, but will wait until after 2/2/2014 to use it in K... ben leinfelder
01:25 PM Revision 8539 (metacat): use the updated EZID base URL. Should be active after Feb 2nd, 2014. https://projects.ecoinformatics.org/ecoinfo/issues/6276
ben leinfelder
01:19 PM Feature #6305 (Resolved): Disable ecogrid links in rendered EML
When the metadata renders, now removing the ecogrid link hrefs so that people don't click on them and get bad respons... ben leinfelder
12:21 PM Story #6296 (In Progress): authMN SM.accessPolicy out of synch with CN and replicaMN
This is in progress - Peter and I have been discussing different ways access control policies can be updated on the M... ben leinfelder
11:31 AM Revision 8538 (metacat): Add the label property for the organization.
Jing Tao
08:34 AM Bug #6398 (Resolved): Obsoleted metadata objects are being returned from Solr
The (long-running) action=reindex did resolve this issue, but I wish we knew why it happened. Will have to keep our e... ben leinfelder
08:12 AM Bug #6320: Create a file-base authentication mechanism as the default method
Hi, ben: I noticed the issue as well and put it on the bug:
https://projects.nceas.ucsb.edu/nceas/issues/862
I ...
Jing Tao
04:26 PM Bug #6320 (In Progress): Create a file-base authentication mechanism as the default method
I'm testing this and having a little problem with the utility class that takes the password and writes it to the auth... ben leinfelder

01/29/2014

03:06 PM Bug #6398: Obsoleted metadata objects are being returned from Solr
Noticed that multiple revisions of the same object were being returned in the solr results.
We tried running action=...
ben leinfelder
01:41 PM Revision 8537 (metacat): uncomment the original tests now that the "field" test is working.
ben leinfelder
01:35 PM Revision 8536 (metacat): use explicit accessor for clientViewBean sessionid since the taglib was resulting in a blank page.
ben leinfelder

01/27/2014

12:46 PM Bug #6398 (Resolved): Obsoleted metadata objects are being returned from Solr
Even when the query specifies to not return objects with the obsoletedBy field.
Example id:
nrs.875.1
It looks...
Lauren Walker

01/25/2014

06:56 PM Revision 8535 (metacat): Fixed a bug that AuthFile constructor didn't read the new value of the password file path from the metacat.properties.
Jing Tao
05:17 PM Revision 8534 (metacat): Add the code to handle a runtime exception.
Jing Tao
04:32 PM Revision 8533 (metacat): Add the code to hide/display the file/ldap section base on the selection of the auth class.
Jing Tao
04:29 PM Revision 8532 (metacat): Add code to persist the properties in the group 3.
Jing Tao

01/24/2014

08:26 AM Story #6276 (In Progress): Update to use new EZID API URL
All,
EZID's domain name change is scheduled for our regularly scheduled maintenance window on Sunday night, Februa...
ben leinfelder
10:26 PM Revision 8531 (metacat): Add the icon-plus-sign and icon-minus-sign.
Jing Tao
05:20 PM Revision 8530 (metacat): If the user doesn't exist in the password file, the auth configuration will give an error.
Jing Tao
04:37 PM Revision 8529 (metacat): Add the code to constructor default user management url.
Jing Tao
04:36 PM Revision 8528 (metacat): Add a property to store the default user management page.
Jing Tao

01/23/2014

02:37 PM Revision 8527 (metacat): Add a default page to handle the user management for the filed-based authentication.
Jing Tao
09:29 AM Revision 8526 (metacat): Use the userManagementurl to replace the ldapweb.cgi.
Jing Tao
05:34 PM Revision 8525 (metacat): Add a variable to store the user management url.
Jing Tao
05:33 PM Revision 8524 (metacat): Add a method to get the user management url.
Jing Tao
04:34 PM Revision 8523 (metacat): Use the userManagementUrl to replace the ldapweb.cgi url.
Jing Tao
04:32 PM Revision 8522 (metacat): Pass the userManagementUrl to templates.
Jing Tao

01/22/2014

03:35 PM Revision 8521 (metacat): Add the documentation for the property user management url.
Jing Tao
03:34 PM Revision 8520 (metacat): Add a new property for the user management url.
Jing Tao
03:33 PM Revision 8519 (metacat): Add a new config for the user-management-url.
Jing Tao
11:46 AM Revision 8518 (metacat): Add the code to set the stored value be selected in the option list.
Jing Tao
06:16 PM Revision 8517 (metacat): Add the part for the AuthFile class in the auth.class property.
Jing Tao
06:14 PM Revision 8516 (metacat): Change the auth class from the text box to the option list.
Jing Tao
05:03 PM Revision 8515 (metacat): Add the documentation for the property auth.file.path.
Jing Tao
05:02 PM Revision 8514 (metacat): Add the correct doc url for the property of auth.file.path.
Jing Tao
04:39 PM Revision 8513 (metacat): Added the file-based authentication configuration. Removed the ldap client section.
Jing Tao

01/21/2014

02:07 PM Revision 8512 (metacat): Separate the properteis for the file-based authentication to the ldap-based authentication.
Jing Tao
09:58 AM Revision 8511 (metacat): Fixed Exception declaration problem
Peter Slaughter
08:59 AM Revision 8510 (metacat): minor changes to error msgs
Peter Slaughter
08:41 AM Revision 8509 (metacat): When a docid's access policy is modified with metacat native api, update CN with the new access policy
Peter Slaughter

01/18/2014

04:30 PM Revision 8508 (metacat): use 1.4.3 MetacatUI tag
ben leinfelder

01/17/2014

11:58 AM Revision 8507 (metacat): Add a group for the testing.
Jing Tao
05:00 PM Revision 8506 (metacat): Add users which are needed in the junit tests when the metacat is file-based authentication.
If users have been added, it just print out the exception. Jing Tao

01/16/2014

09:51 AM Feature #6285 (In Progress): Handle EML singleDateTime field in SOLR index
Giving this a whirl locally and adding it to the CN lib so we all can make use of it. ben leinfelder
09:44 AM Revision 8505 (metacat): merge trunk version of cn-index-processor solr schema with the metacat version -- keeping the dynamic multivalued fields.
ben leinfelder
05:33 PM Revision 8504 (metacat): Add a note to the administrator to tell the name format of groups and users.
Jing Tao

01/15/2014

09:55 AM Revision 8503 (metacat): check for existing index document before trying to use existing fields.
ben leinfelder
06:06 PM Revision 8501 (metacat): Use the verity=>none for start_tls method on some search methods.
These methods will search the referral servers, some of which is using self-signed certificate. There is a difficuty ... Jing Tao

01/14/2014

02:57 PM Revision 8498 (metacat): allow indexing of RDF documents - provide a sparql query that will return values for the field name. Using measurement_sm initially (a dynamic multivalued solr field). https://projects.ecoinformatics.org/ecoinfo/issues/6253
ben leinfelder
02:21 PM Revision 8497 (metacat): use our own copy of the solr schema
ben leinfelder
02:14 PM Revision 8496 (metacat): check for existing documents - don't assume it exists.
ben leinfelder
12:49 PM Revision 8495 (metacat): fix typos/compilation
ben leinfelder

01/13/2014

01:46 PM Task #6347 (Closed): Create mechanism for adding name/value pairs to the solr index
See MetacatSolrIndex.submit() for the method that allows you to submit the document and/or just the fields for indexing. ben leinfelder
01:42 PM Revision 8494 (metacat): Change the test file according to the change on the constructor.
Jing Tao
01:41 PM Revision 8493 (metacat): Change to use AuthFile constructor.
Jing Tao
01:39 PM Revision 8492 (metacat): Add code to check if groups is null.
Jing Tao
09:01 AM Feature #5989 (In Progress): Track data download, view and citation statistics
Peter Slaughter
 

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