Activity
From 01/18/2010 to 02/16/2010
02/16/2010
- 02:23 PM Bug #4794: "Mad lib" as a "Column View" tab
- I've parameterized the Annotation Page so that it omits the help text and the Observation/Measurement options and onl...
- 01:40 PM Bug #4794: "Mad lib" as a "Column View" tab
- oh, I also don't like that I have to save after each change in column selection (in case they have made a change in t...
- 01:34 PM Bug #4794: "Mad lib" as a "Column View" tab
- I've got the extra tab showing the contents of the same page that shows up when you "Annotate current column..."
This...
02/15/2010
- 08:01 AM Bug #4788: Popup lightweight ontology browser
- also, ENTER key is not being captured by the popup - the underlying frame hears it first as if you've clicked the Ok ...
02/12/2010
- 05:14 PM Bug #4788: Popup lightweight ontology browser
- Now:
-CLICK on the field and the popup is shown
-TAB will save current selection from the popup
-ESC exits without sa... - 03:46 PM Bug #4788: Popup lightweight ontology browser
- This is working with some more room for refinement:
-TAB and/or ENTER key should trigger the selection and close the ... - 03:54 PM Bug #4794 (Resolved): "Mad lib" as a "Column View" tab
- Include another tab where the Annotation Table resides. The "Column View" tab would show the madlib phrase for the cu...
- 03:51 PM Bug #4774: Make spyglass icon more button-like
- no more spyglass icon - replaced with a text field (for initiating searches)
- 03:50 PM Bug #4780: "Mad lib" annotation screen
- Reuse this madib UI in a tab where the Annotation Table is located.
When this "Column View" tab is selected:
-display...
02/11/2010
- 01:06 PM Bug #4779: Ontology Browser - use hybrid tree/table UI
- this now works - updated the JTreeTable code from the java tutorial
http://java.sun.com/products/jfc/tsc/articles/boo... - 10:39 AM Bug #4788 (Resolved): Popup lightweight ontology browser
- Instead of the modal dialog, the browser should just be a super-duper-combobox
02/10/2010
- 06:07 PM Bug #4777: Ontology Browser - show only search matches in the tree
- doing this in the "realtime ajaxy" style might be very resource intensive - especially as the number and size of the ...
- 05:53 PM Bug #4777: Ontology Browser - show only search matches in the tree
- I have the tree filtering for the searches now.
When no search term is entered, the tree resets itself (might want a ... - 09:57 AM Bug #4780: "Mad lib" annotation screen
- added mad lib phrasing to the "Add Context..." menu:
"The Observation was made where the <Entity> was <Relationship>...
02/09/2010
- 04:18 PM Bug #4780: "Mad lib" annotation screen
- There's now a version of the mad lib form when you use the "Annotate current column..." option.
- 02:40 PM Bug #4780: "Mad lib" annotation screen
- bowers: Here is the whole madlib (i think):
The <characteristic> of the <entity*> was recorded using the <standard>... - 01:55 PM Bug #4768: UI for managing annotation ontologies
- done for this round of plugin development - will revisit when loading remote (metacat) ontologies as well
- 01:54 PM Bug #4770: Load Annotations from Metacat in Annotation plugin
- adding dependency on the UI bug so I can close that but still have a link.
My hunch is that we'll want to manage loca... - 01:52 PM Bug #4776: Do not display ontology URI in any UI components
- removed from the comment field and from the ontology browser
- 01:51 PM Bug #4775: Ontology Browser - omit the ontology URI from top-level
- ontology is not the top level - only the appropriate superclass[es] for the widget are shown.
the Ontology name appea... - 01:27 PM Bug #4778: Ontology Browser - include more metadata about selected class
- now showing two columns:
-class name
-ontology name (not the URI)
when you select a class, the description shows in ... - 10:52 AM Bug #4779: Ontology Browser - use hybrid tree/table UI
- base classes were already in Morpho for the Access control page.
Made some modifications for use with Onology browsin...
02/08/2010
- 04:46 PM Bug #4780 (Resolved): "Mad lib" annotation screen
- Discussed extensively on IRC, as well as a bit in email that kicked it off (bowers):
---
I think a "fill in the bla... - 04:44 PM Bug #4779 (Resolved): Ontology Browser - use hybrid tree/table UI
- Could augment the existing tree to include additional columns that will display additional information about the clas...
- 04:40 PM Bug #4778 (Resolved): Ontology Browser - include more metadata about selected class
- Descriptions and labels and other documentation (?) that can be pulled form the ontology should be accessible when th...
- 04:35 PM Bug #4777 (Resolved): Ontology Browser - show only search matches in the tree
- Searching for a match highlights and expands the tree to show the matches, but should also filter out non-matches.
... - 04:32 PM Bug #4776 (Resolved): Do not display ontology URI in any UI components
- We should be using a "friendlier" string to distinguish different ontologies instead of the formal URI.
versionInf... - 04:28 PM Bug #4775 (Resolved): Ontology Browser - omit the ontology URI from top-level
- The ontology browsing tree is confusing because the ontology URI for every active (and implicitly active) ontology is...
- 04:25 PM Bug #4774 (Resolved): Make spyglass icon more button-like
- The icon for launching the ontology browser should encourage clicks
- 04:15 PM Bug #4768: UI for managing annotation ontologies
- now loading new ontologies and unloading ontologies that are removed from the configuration
- 03:10 PM Bug #4768: UI for managing annotation ontologies
- created a very basic editor for the physical/logical mapping that is stored in Morpho's configuration.
It's just text... - 09:43 AM Bug #4768: UI for managing annotation ontologies
- You might see if the ontology manager/editor that Sean Riddle developed for Kepler could be reused in whole or part h...
- 10:15 AM Bug #4772 (New): Annotation cell selection also selects data table cell
- It seems that part of column model sharing between the annotation table and the data table results in the cell select...
02/06/2010
- 10:58 PM Bug #4738: Discard Annotation changes when datapackage window is closed
- this is done now. just need to figure out when and how to warn when discarding the changes
- 10:55 PM Bug #4771 (New): Decide permission policy for Annotations and Ontologies in Metacat
- My proposal:
-public read on all Ontologies
-same permissions as EML for Annotations that annotate that EML
This... - 10:48 PM Bug #4770 (New): Load Annotations from Metacat in Annotation plugin
- Currently only locally stored annotations are loaded (at startup when the Annotation Plugin is initialized).
For a l... - 10:41 PM Bug #4769 (New): Save annotations to network
- Currently only supporting saving Annotations to local store
This has implications for loading Annotations as well si... - 10:30 PM Bug #4768: UI for managing annotation ontologies
- Soe more background (from an email I sent a while ago):
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I went to use the ontology browser in Morpho and realiz... - 10:29 PM Bug #4768 (Resolved): UI for managing annotation ontologies
- There is a section of the config.xml that contains ontology URI (and URL) mappings for ontologies we want to load whe...
02/05/2010
- 03:41 PM Bug #4737: Provide menu option for removing Observations and Measurements
- If a user wants to remove an observation that is context for other observations, I think the system could prompt the ...
- 02:34 PM Bug #4737: Provide menu option for removing Observations and Measurements
- Grouped the options, hopefully it's clear what they do and what the implications are.
Decided to require the Context... - 11:59 AM Bug #4737: Provide menu option for removing Observations and Measurements
- When we remove an Observation...
-do we want to remove the Context it might be providing for another Observation?
-d... - 02:42 PM Bug #4724: Mark data package as changed when Annotation is edited
- adding a dependency for the annotations being discarded when the window closes. I'm not sure what should rely on what...
- 02:37 PM Bug #4738: Discard Annotation changes when datapackage window is closed
- Now listening for the window to close.
If the window closes, then we throw away any unsaved changes and use whatever ... - 10:35 AM Bug #4739: Re-Reorder after editing Annotation
- now if you reorder the table once, it will remain "reordered" until you close the window.
- 09:14 AM Bug #4718: Include help text on the Annotation wizard page
- reopen if there are additional comments to make on the help text.
- 09:13 AM Bug #4732: Directly select/edit the Annotation classes from the table
- hey, look at that, this is done.
02/04/2010
- 04:48 PM Bug #4739 (Resolved): Re-Reorder after editing Annotation
- Whenever the annotation is edited, the annotation table gets updated and returned to it's original column order.
If ... - 04:40 PM Bug #4738 (Resolved): Discard Annotation changes when datapackage window is closed
- Because the SMS library keeps it's annotations in memory, you can actually close the data package after editing the a...
- 04:37 PM Bug #4737 (Resolved): Provide menu option for removing Observations and Measurements
- If you add an observation annotation there is no way to remove it - you can only edit it and remove all of the classe...
- 03:41 PM Bug #4732: Directly select/edit the Annotation classes from the table
- Now if you don't select a class in the ontology browser (actually it's not that easy to do since you have to cntrl+cl...
- 03:02 PM Bug #4732: Directly select/edit the Annotation classes from the table
- Double click on the cell you want to edit:
-if there's an existing value, the ontology browser opens to that selected... - 08:21 AM Bug #4732 (Resolved): Directly select/edit the Annotation classes from the table
- Instead of going through the motion of selecting a column, bringing up the annotation page, then bringing up the onto...
02/03/2010
- 05:20 PM Bug #4718: Include help text on the Annotation wizard page
- i've added a snippet of Shawn's explanation to the main UI page for annotations, and then put more text on a Help pop...
- 09:43 AM Bug #4718: Include help text on the Annotation wizard page
- The measurement "iskey" attribute in the annotation syntax is a constraint, much like (primary) key constraints in re...
- 08:21 AM Bug #4718: Include help text on the Annotation wizard page
- Added help for the class selection items (Entity, Char, Standard, Protocol).
I'd like some guidance on the Observati... - 11:56 AM Bug #4717: Grey-out Annotation menu options when not-applicable
- Here are the current scenarios:
1. When you first open Morpho (no data package is open)
-Only Search Annotations... i...
02/02/2010
- 03:51 PM Bug #4724: Mark data package as changed when Annotation is edited
- I've been thinking that the annotation will eventually supplement or supplant the current EML attribute description p...
- 03:42 PM Bug #4724: Mark data package as changed when Annotation is edited
- This is part of a bigger issue - how to balance the user's need to have all the underlying structure hidden with the ...
- 01:32 PM Bug #4724 (New): Mark data package as changed when Annotation is edited
- Currently you can make as many changes as you want to an Annotation without ever changing the EML data package that i...
- 12:33 PM Bug #4720: Automatically generate Measurement and Observation labels
- disabling the text field for the labels - now observations and measurements will be auto labeled
- 11:27 AM Bug #4719: Filter the Ontology Browser by superclass
- Now only the subclasses of the Annotation class being collected are shown in the tree.
Note: this involves regenerati...
02/01/2010
- 01:52 PM Bug #4720 (Resolved): Automatically generate Measurement and Observation labels
- It's more of a burden than a feature to have to type in a custom label for your observation or measurement at this po...
- 01:49 PM Bug #4719 (Resolved): Filter the Ontology Browser by superclass
- The Ontology Browser is reused for many fields (Entity, Characteristic, Standard, Protocol, Relationship). Rather tha...
- 01:46 PM Bug #4718 (Resolved): Include help text on the Annotation wizard page
- Each field/checkbox/class selection widget should have a brief explanation about what is expected input (similar to t...
- 01:44 PM Bug #4717 (Resolved): Grey-out Annotation menu options when not-applicable
- If a column is currently selected that is not part of an Observation, it makes no sense to add or remove a Context fr...
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