Ecoinformatics Redmine

08/31/2009

05:15 PM FIRST Bug #4352: Metadata for each item disappears after saving and re-opening

I can see the values being save to the QTI XML on the file system - so it must just be a [re] display issue.
Perhaps ... ben leinfelder

03:03 PM Kepler Bug #3672: Open/Save Workflow as KAR Archive

I just tried a Save as KAR then Open KAR and got a ClassCastException: looks like we're expecting a KarEntry (a subcl... ben leinfelder

08/28/2009

04:36 PM Kepler Bug #4348: Metacat authenticated query is case sensitive, unauthenticated is not

actually - i'll go ahead and mark this as fixed since only the server portion of the ecogrid needs to be redeployed -... ben leinfelder

04:30 PM Kepler Bug #4348: Metacat authenticated query is case sensitive, unauthenticated is not

This is actually a modification in the seek/ecogrid project.
I've made the change to the the XSLT that generates te m... ben leinfelder

10:25 AM Kepler Bug #4010: RExpression2 - tracking for backwards compatibility

all the objects are removed when the next R actor starts to [re]use the "R engine" so only objects sent through token... ben leinfelder

08/27/2009

04:58 PM Kepler Bug #4010: RExpression2 - tracking for backwards compatibility

That works! ben leinfelder

04:00 PM Kepler Bug #4010: RExpression2 - tracking for backwards compatibility

just:
source(filename)
you think? ben leinfelder

02:06 PM Kepler Bug #4010: RExpression2 - tracking for backwards compatibility

Testing JRI with the SANParks TPC workflows. Because of how the R code is sent to JRI and executed, we have to do som... ben leinfelder

08/26/2009

08:40 AM FIRST Bug #4315: Images repeating when editing assessment items

Are you not seeing duplicate images the first time you parse an exam as in:
-------------- jlee.1607.1 --------------... ben leinfelder

08/24/2009

02:12 PM FIRST Bug #4329: Allow offline XML validation

wow! it's so much quicker on the validation now, too. ben leinfelder

02:01 PM FIRST Bug #4329: Allow offline XML validation

from jay:
-------
When I tried create the data package, I filled up all the information for instructor, institution a... ben leinfelder

02:01 PM FIRST Bug #4329 (Resolved): Allow offline XML validation

Need to be able to run morpho/first without a constant internet connection. For schema-based validation of EdML and Q... ben leinfelder

11:27 AM Kepler Bug #4197: Waterflow TPC demo - tracking bug

now using OrderedRecordTokens and OrderedRecordAssembler to do things "correctly" (no ptolemy overrides) ben leinfelder

08/18/2009

03:18 PM Kepler Bug #4002: RExpression2 - handle arbitrary R data structures

tests the various structures are transferred by the JRI implementation. ben leinfelder

03:14 PM Kepler Bug #4002: RExpression2 - handle arbitrary R data structures

in the example cases given, all but the structure produced by ~ were transferred from one R actor the the other.
Thi... ben leinfelder

02:46 PM Kepler Bug #4278: Changes to a reopened KAR are not saved to the new KAR

Also tried saving the modified workflow to a different .kar file, but the changes are still lost when i open the new ... ben leinfelder

11:41 AM Kepler Bug #4322: Attempting to save changes to a workflow saved in a KAR file fails

It should prompt you to resave it in the KAR from which it originally came. If you don't want to overwrite that exist... ben leinfelder

11:28 AM Morpho Bug #3031: Slight display problem with Welcome Screen on Mac

committed ben leinfelder

08/17/2009

02:30 PM Kepler Bug #2963: Add data structure for tabular data and associated metadata

I've introduced an OrderedRecordToken to ptolemy - it preserves the original order of the RecordToken.
Unfortunately ... ben leinfelder

02:15 PM Kepler Bug #4037: WRM - connect to Kepler-wide configurable provenance store

Provenance configuration is now using the cache's HSQLDB and is not configurable by a normal user (developers can cha... ben leinfelder

02:07 PM FIRST Bug #3869: The HTML tags appear in the downloaded excel file

these are stripped out on download ben leinfelder

02:06 PM SANParks Informatics Bug #3007: Create SAEON skin with same/similar features as SANParks skin

deployed in various nodes in SA ben leinfelder

02:06 PM SEEK Bug #3081: Deploy ecogrid-1.0.0 services for KNB (including registry)

ages ago ben leinfelder

11:22 AM Kepler Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name

appending "_n" for duplicate Attribute names. ben leinfelder

08/14/2009

04:24 PM Kepler Bug #4318: RExpression NA converts to string "nil", not value nil

I've changed to use StringToken.NIL when we encounter NA objects in R.
This is still different than Token.NIL. String... ben leinfelder

01:48 PM FIRST Bug #4315 (Resolved): Images repeating when editing assessment items

I've found that when I go to edit the assessment items I see duplicate images (that cause invalid QTI, actually). It ... ben leinfelder

01:04 PM FIRST Bug #4309: Some of Data packages could not be uploaded to web

It seems that our handling of images in the Assessment Parser is creating some invalid QTI documents - these then cau... ben leinfelder

10:28 AM FIRST Bug #4309: Some of Data packages could not be uploaded to web

I've corrected question 76 and 77 to only include the single image and resaved '2005 Fall Final' (jlee.1687) to fred... ben leinfelder

10:18 AM FIRST Bug #4309: Some of Data packages could not be uploaded to web

For '2005 Fall Final' (jlee.1687.2) there are two questions that were serialized to invalid QTI documents:
-Question ... ben leinfelder

08:58 AM FIRST Bug #4309: Some of Data packages could not be uploaded to web

No, we should not have to manually upload files. I want to figure out what happened and how to fix it.
We have a few ... ben leinfelder

09:30 AM Kepler Bug #4278: Changes to a reopened KAR are not saved to the new KAR

I tried running this in the 'kepler' suite and still had the same behavior. Here is what I did:
-open existing demo w... ben leinfelder

08/13/2009

05:36 PM FIRST Bug #4309: Some of Data packages could not be uploaded to web

i loaded the updated jlee.1800.2 file onto fred (manually). and now I can download the assessment [data] from fred fo... ben leinfelder

05:17 PM FIRST Bug #4309: Some of Data packages could not be uploaded to web

I did notice that jlee.1800.1 has one prompt with <html> tags in it. This is supposed to be supported (they are wrapp... ben leinfelder

05:13 PM FIRST Bug #4309: Some of Data packages could not be uploaded to web

There is, however, a problem with the IDs - at least for jlee.1800.2 (there is only jlee.1800.1 on fred) this will ca... ben leinfelder

05:06 PM FIRST Bug #4309: Some of Data packages could not be uploaded to web

it looks like this has been uploaded:
http://fred.msi.ucsb.edu:8080/knb/metacat/jlee.1753/first
ben leinfelder

05:03 PM FIRST Bug #4309: Some of Data packages could not be uploaded to web

oops - i meant to paste this url:
http://fred.msi.ucsb.edu:8080/knb/metacat/jlee.1755/first
ben leinfelder

05:01 PM FIRST Bug #4309: Some of Data packages could not be uploaded to web

there is no jlee.1755.5 on the server - only jlee.1755.2:
http://fred.msi.ucsb.edu:8080/knb/metacat/jlee.1800/first
I... ben leinfelder

04:22 PM FIRST Bug #4309: Some of Data packages could not be uploaded to web

Please make sure you grant public read to both the assessment and the data
I see jlee.1800.1 on the server (internall... ben leinfelder

04:12 PM FIRST Bug #4309: Some of Data packages could not be uploaded to web

what was the item it had an error with? what was the error? ben leinfelder

03:34 PM FIRST Bug #4309: Some of Data packages could not be uploaded to web

I couldn't upload all of jlee.220.3 to the EGR server because:
a) I don't have full access to the data file it refere... ben leinfelder

03:19 PM FIRST Bug #4309: Some of Data packages could not be uploaded to web

When you set the URL to a different Metacat server - please hit the "Clear Temporary Storage"
That may have something... ben leinfelder

03:17 PM FIRST Bug #4309: Some of Data packages could not be uploaded to web

I downloaded Jay's latest Morpho backup and used it form my Morpho - saved to fred.msi.ucsb.edu successfully (jlee.22... ben leinfelder

03:16 PM FIRST Bug #4309: Some of Data packages could not be uploaded to web

from Jay
--------
Hi Ben,
Before I tried to save data package into web, the data package was fully
parsed and saved ... ben leinfelder

09:47 AM FIRST Bug #4309: Some of Data packages could not be uploaded to web

Can you describe the _exact_ steps you took when saving to the network?
Was the assessment fully saved locally before... ben leinfelder

02:39 PM Kepler Bug #4087: No reset/x button to clear component searches

How about this policy:
-Deactivated Cancel button until Search button is pushed
-Activated Cancel button until Cancel... ben leinfelder

02:21 PM Kepler Bug #4087: No reset/x button to clear component searches

Component searches that hit the network could take a bit longer..."Cancel" would be nice in those situations.
Um, I ... ben leinfelder

12:11 PM Kepler Bug #3991: large workflow errors

Just tried it on trunk suite=wrp and was able to open the large ('both.xml') workflow.
When I ran it I got a provenan... ben leinfelder

11:52 AM Kepler Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets

still display warning messages when there is mixed public/private data that prevents a perfect datapackage download, ... ben leinfelder

10:11 AM Kepler Bug #3893: EML 2 Dataset not working with local data

allow the use of the entityTable name when constructing the datacache object - otherwise only one (seemingly arbitrar... ben leinfelder

08/12/2009

12:39 PM Kepler Bug #3985: Types resolved to unacceptable types

Added a check during preinitialize() that will find unknown-to-unknown connections and set the RExpression unknown-ty... ben leinfelder

11:27 AM Kepler Bug #3985: Types resolved to unacceptable types

from the RExpression actor we won't "know" the type of the port until the R script executes and we're emitting/readin... ben leinfelder

10:54 AM Kepler Bug #4129: "unable to parse the metadata: null" with dataset judithk.306.21

Revision is now at 306.22 - this seems to work with a clean cache from the trunk of kepler.
i'm not getting the metad... ben leinfelder

08/11/2009

02:47 PM Kepler Bug #4147: Error message with selectable text

Now I'm seeing a frame that is too small to accommodate the text and the buttons - they are chopped off.
The text is... ben leinfelder

11:46 AM Kepler Bug #4304 (Resolved): Progress monitor is blank when authenticating for KAR upload

When I do "Save Archive (KAR)" I go through many steps (dialogs popping up everywhere). But after I enter my authenti... ben leinfelder

11:40 AM Kepler Bug #4274: Metacat authentication fails under trunk, not under pre-alpha branch

Made the LDAP GUI not a singleton.
Changed the synchronization for the methods.
Seems to be working in these cases:
-... ben leinfelder

11:38 AM Kepler Bug #3273: Improve authentication dialogue so that the reason for authentication is clear

Readded the Domain to the title ben leinfelder

08/10/2009

03:15 PM FIRST Bug #4284: Unable to download student response data from the EGR server via FIRST website

Moved the data to my development machine:
turns out the query was throwing an error when questions didn't all have th... ben leinfelder

09:47 AM Kepler Bug #4274: Metacat authentication fails under trunk, not under pre-alpha branch

I've been trying to get this working as it was in pre-alpha, but it's hanging forever on the controllingDialog.dispos... ben leinfelder