Project

General

Profile

Activity

From 10/02/2008 to 10/31/2008

10/31/2008

04:11 PM Bug #3576: support for accessing cascading metadata from within CompositeCoactor
I just committed an alternative version of CompositeCoactor that supports binding to cascading metadata (or annotatio... Timothy McPhillips

10/30/2008

01:41 PM Bug #3586 (Resolved): COMAD traces should be reproducible when there is limited concurrency
The ComadTest actor is roughly the COMAD equivalent of Ptolemy's NonStrictTest. It records the stream of data it rec... Timothy McPhillips
11:47 AM Bug #3585 (New): Provide API for creating output files during a workflow run
I suggested in bug 3558 that Kepler should create a directory on the user's system for each workflow run and store th... Timothy McPhillips

10/29/2008

11:58 AM Bug #3578 (New): optimize timing of data download by EML and other data source actors
The EML actor and some other data source actors download data when the drag and drop on the workflow canvas occurs, o... Matt Jones
05:49 PM Bug #2023: remove redundant labeling in tree
I randomly looked at this old bug and decided to close it out. Aaron Aaron
05:31 PM Bug #3542: Tree View menu is too wide when opened
A solution for this is to hard wire the width and height in the show() method of the TreeTableau Class.
//frame.pack...
Aaron Aaron
05:08 PM Bug #3242: dlls should not go in c:/Windows/System32
I think the right solution is to add the proper directory to the user's path
upon startup. Ptolemy does this in $PTI...
Christopher Brooks

10/28/2008

04:12 PM Bug #3242: dlls should not go in c:/Windows/System32
I agree that its a problem putting dll's in system32, but we've had extremely poor success trying to keep them contai... Matt Jones
03:07 PM Bug #3242: dlls should not go in c:/Windows/System32
The ant build failed for me under Windows:
BUILD FAILED
c:\tmp\cxh\src\kepler\build.xml:210: Failed to copy c:\tmp\c...
Christopher Brooks
11:36 AM Bug #3577 (New): FilterUI actor has problems
User reports Browser actors not working on Mac. I note Browser Display and BrowserUI seem to work (BrowserUI could us... Derik Barseghian

10/27/2008

03:04 PM Bug #3576 (New): support for accessing cascading metadata from within CompositeCoactor
The CompositeCoactor class extends TypedCompositeActor (and implements Coactor) to provide a mechanism for implementi... Timothy McPhillips
02:33 PM Bug #3575 (New): A representation of COMAD collections on the file-system
It would be useful if there were a representation of Collections in the file
system. In particular, I could imagine ...
Daniel Zinn
11:49 AM Bug #3574 (New): Support for importing directory contents using CollectionSource
A common workflow pattern is to take as input all of the files (or those of a particular type) in a directory on a re... Timothy McPhillips
11:32 AM Bug #3573 (New): Support for importing file contents automatically using CollectionSource
The CollectionComposer and CollectionReader actors extend CollectionSource to read XML representations of the input t... Timothy McPhillips

10/24/2008

04:48 PM Bug #3568 (New): support for writing COMAD-style trace files from the Provenance Recorder
I have heard rumors that there are plans to enable the general-purpose Provenance Recorder in Kepler to (optionally) ... Timothy McPhillips
02:09 PM Bug #3566: order collection contents displayed in provenance browser?
We have noticed this and Bertram brought this "feature request" a long time ago. It's nice to have this in this bugzi... manish manish
01:04 PM Bug #3566 (New): order collection contents displayed in provenance browser?
When the data elements inside COMAD collections are displayed in the provenance browser they seem to be arbitrarily o... Timothy McPhillips
01:18 PM Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
I am encountering this problem as well (on OSX). The scrollbars disappear when I go to full screen mode. They do not... Timothy McPhillips
01:09 PM Bug #3552: Annotation elements in trace file do not appear in details pane of provenance browser
Cool! It also would be nice somehow to distinguish annotations and metadata applied directly to the element in quest... Timothy McPhillips
05:53 PM Bug #3560 (New): Color-code contents of CollectionDisplay
The CollectionDisplay actor provides a live, XML-formatted view of the data stream arriving at the actor in a COMAD w... Timothy McPhillips
05:38 PM Bug #3559 (New): month field in trace file name is off by one
The name of a new run trace file comprises the name of the workflow, a timestamp, and a number distinguishing the tra... Timothy McPhillips

10/23/2008

04:46 PM Bug #2252: Need to add actors for aligning mulitiple DNA or protein sequences
Actors for running ClustalW and Gblocks are included in the ppod-actors module. Timothy McPhillips
04:33 PM Bug #3558 (New): Store each workflow run trace in it's own directory
The ppod-gui module includes enhancements to the Kepler GUI for browsing and viewing the traces of previously run wor... Timothy McPhillips
11:51 AM Bug #3557: Provide data dependency graph view in provenance browser
This is a well accepted data-dependency view, and in our current dependency view, we have included "actors" to make t... manish manish
11:21 AM Bug #3557 (New): Provide data dependency graph view in provenance browser
The provenance browser currently provides four views of a workflow run: the raw trace file, the "Collection History"... Timothy McPhillips
11:43 AM Bug #3552: Annotation elements in trace file do not appear in details pane of provenance browser
This feature has been implemented in a local version. Shawn and I are working on revised provenance model, which will... manish manish
05:25 PM Bug #3555 (New): enhancements to Trace File view in provenance browser
The provenance browser allows one to view the raw trace file (in XML format) of the run currently loaded in the brows... Timothy McPhillips

10/22/2008

03:36 PM Bug #3543: org.ecoinformatics.seek.R.RExpression
Thanks for reporting, I broke this with my last checkin when trying to clean up hardcoded paths. R wants paths to use... Derik Barseghian
07:49 AM Bug #3543 (Resolved): org.ecoinformatics.seek.R.RExpression
Actor is failing to properly generate directory name for setwd() R command. R is expecting "/" as file separators yet... Paul Allen
01:29 PM Bug #3547: CollectionReader actor throws exception when input file contains Metadata or Parameter elements
The problem was that AnnotationSet was trying to record invocation dependencies implied by the addition of annotation... Timothy McPhillips
10:59 AM Bug #3547 (Resolved): CollectionReader actor throws exception when input file contains Metadata or Parameter elements
The CollectionReader actor reads in an XML representation of the input to a COMAD workflow and translates the Collect... Timothy McPhillips
01:07 PM Bug #3552 (In Progress): Annotation elements in trace file do not appear in details pane of provenance browser
The provenance browser shows the details for the selected data or collection element of a trace in the lower left-han... Timothy McPhillips
10:40 AM Bug #3546 (New): Automatically load trace for a completed run into the provenance browser
At present, viewing the trace of a workflow run via the provenance browser (the one in the provenance-apps module) re... Timothy McPhillips

10/21/2008

04:21 PM Bug #3542 (Resolved): Tree View menu is too wide when opened
When you go to View => Tree View, the window opens as wide as the top level's _iconDescription, which is very long. I... Derik Barseghian

10/16/2008

02:33 PM Bug #3539: wierd behaviors of port parameter
workflow for testing port parameter jianwu jianwu
02:32 PM Bug #3539 (New): wierd behaviors of port parameter
when put a port parameter in a composite actor, there are some wierd behaviors:
I put DDF/PN in top level and have a...
jianwu jianwu
06:11 PM Bug #3531 (New): Save As dialog inconsistent between linux and mac
If in Kepler under linux you Save As a workflow, and give the workflow a filename with no extension, a .xml extension... Derik Barseghian

10/15/2008

04:23 PM Bug #3530: Locking assertion failure
Hauke had a similar bug, he wrote:
--start--
Running the triq/ptolemy.domains.sr.examples on linux with Java 1.6 work...
Christopher Brooks
03:46 PM Bug #3530: Locking assertion failure
Known workaround is available. Aaron Aaron
03:44 PM Bug #3530 (Resolved): Locking assertion failure
Specifically, I encountered this issue on Ubuntu version 8.04.1 (Hardy Heron) with dual displays using java 1.5
I ...
Aaron Aaron
03:17 PM Bug #3529: cannot always set parameters when running workflow from command line
I'll take this one. Maybe MoMLSimpleApplication is not the
place for this, since it makes the application not so sim...
Christopher Brooks
11:02 AM Bug #3529 (Resolved): cannot always set parameters when running workflow from command line
When -nogui is used, MoMLSimpleApplication loads and runs the workflow. This class does not support setting model par... Daniel Crawl
 

Also available in: Atom