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From 12/28/2009 to 01/26/2010

01/26/2010

03:53 PM Bug #4573: LDAP and Register CGIs reference skin-specific templates in the common area
Differing to 1.9.3 Michael Daigle
03:52 PM Bug #4627: [ESA] Update fails when document rev number is missing
Resolved Michael Daigle
03:52 PM Bug #4627: [ESA] Update fails when document rev number is missing
Updated the registry code to recognize when the docid for a modify action does not have a revision. In that case, ge... Michael Daigle
03:50 PM Revision 5201 (metacat): Get the latest revision from metacat when a modify call docid does not have a revision number.
daigle

01/25/2010

03:46 PM Bug #4356: knb website query result shows old version of a document
We need to add code to retry (queue) the query result addition when it fails. differing this to 1.9.3 Michael Daigle
03:13 PM Bug #4658: metacat runs out of memory
Differing to release 1.9.3. We have made several performance improvements in 1.9.2, and we need to see if those reso... Michael Daigle
03:09 PM Bug #4649: Metacat couldn't update a document from client, which previous versions only stay in xml_revisions table
resolved Michael Daigle
03:09 PM Bug #4649: Metacat couldn't update a document from client, which previous versions only stay in xml_revisions table
Updated the code to return a more meaningful message ... that the document had been deleted and cannot be updated. Michael Daigle
03:02 PM Revision 5200 (metacat): Send appropriate message when trying to update a docid that was previously deleted.
daigle

01/22/2010

10:06 AM Revision 5199 (metacat): Reformat file. No code change.
daigle

01/21/2010

03:12 PM Bug #4690: register-dataset.cgi should have its permissions set
The initial error thrown by Apache:
(13)Permission denied: exec of '/var/www/edu.ucsb.nceas.dev/knb/cgi-bin/register...
Shaun Walbridge
02:23 PM Bug #4690 (Closed): register-dataset.cgi should have its permissions set
Currently, the registry script does not get the execute bit set when deployed from a WAR file -- either we should fix... Shaun Walbridge
03:02 PM Revision 5198 (metacat): do a quick retry if building path index fails with a SQL error
daigle
02:25 PM Bug #4691 (Resolved): Registry mixes up users when saving
If different users are added for the data set owner and contact, the registry messes up the serialization and takes d... Shaun Walbridge

01/20/2010

03:24 PM Bug #4442: Spatial indexing should not run and block metacat
moving to 1.9.3 target Michael Daigle
03:23 PM Bug #4651: data packages losing data tables (and then finding them again)
Moving to 1.9.3 target since this is on dev, and will take some time to research. Michael Daigle
03:16 PM Bug #4367: metacat didn't update xml_path_index table while a document was updated
It looks like this is a race condition. The xml_nodes insertion commit must still be going on when the indexing kick... Michael Daigle
11:24 AM Bug #4367: metacat didn't update xml_path_index table while a document was updated
Hmm, there is also a foreign key constraint violation. Inserting into xml_index violates a constraint on xml_nodes.n... Michael Daigle
10:52 AM Bug #4367: metacat didn't update xml_path_index table while a document was updated
Forcing index via the API causes a StringIndexOutOfBoundsException when processing spatial coordinates. See bug 4680... Michael Daigle
02:55 PM Revision 5197 (metacat): Make sure buildIndex throws an exception if it has a sqlexception. That way the indexing object will be added to the indexing queue and reprocessed.
daigle
10:46 AM Bug #4680 (Resolved): Geoserver StringIndexOutOfBoundsException
Geoserver is throwing many StringIndexOutOfBoundsExceptions. There is a geoserver bug listed against version 2.4.4 t... Michael Daigle
04:26 PM Bug #4641: must support java 1.6
resolved Michael Daigle
04:26 PM Bug #4641: must support java 1.6
Updated release notes and Metacat Administrators Guide. Note that the pdf version of the guide does not have active ... Michael Daigle
04:23 PM Revision 5196 (metacat): PDF version of doc
daigle

01/19/2010

10:32 AM Bug #4616: Timed Replication takes many hours and drives the load up on KNB
After raising the log level on KNB to INFO and tracing through the logs, it was clear that the delay was happening wh... Michael Daigle
10:25 AM Revision 5195 (metacat): Pass the doc xml as a string to docImpl.write and writeRepication. This is so a reader can be create for the parsing and for the write to disk. Also created a db access class for xml query result deletion.
daigle

01/15/2010

11:07 AM Bug #4676 (New): registry did not let me see my data table, although permissions are set
I was demonstrating the knb dataset registry, and put in a test dataset (knb.230).
We logged in (as uid=mobrien,o=LT...
Margaret O'Brien

01/13/2010

02:18 PM Bug #4367: metacat didn't update xml_path_index table while a document was updated
I should test this by reindexing doc via api and looking for errors Michael Daigle
11:16 AM Revision 5194 (metacat): Update java version references to java 6
daigle
10:56 AM Revision 5193 (metacat): Remove redundant Version information
daigle
10:55 AM Revision 5192 (metacat): Add 1.9.2 release notes.
daigle
09:26 AM Bug #4645: handleGetRevisionAndDocTypeAction should search both xml_documents and xml_revisions table
now, it can search both xml_documents and xml_revisions. Jing Tao

01/12/2010

01:30 PM Revision 5191 (metacat): Fixed typo in docs.
Matt Jones
01:02 PM Revision 5190 (metacat): Updated index page to hide obsolete documentation and provide a simpler
description of Metacati, as well as links to where Metacat is in use. Matt Jones

01/11/2010

03:48 PM Bug #4367: metacat didn't update xml_path_index table while a document was updated
So far I haven't been able to reproduce this with the dev skin or morpho. Michael Daigle
02:25 PM Bug #4367: metacat didn't update xml_path_index table while a document was updated
I haven't been able to reproduce this using the dev skin in metacat. I'll try using morpho. Michael Daigle
10:33 AM Bug #4641: must support java 1.6
I do not think we should require 1.6 at this point, as many people have existing 1.5 JVM installations on production ... Matt Jones
10:02 AM Bug #4641: must support java 1.6
I can see arguments both ways. However, I would probably lean toward making 1.6 a requirement for a few reasons:
--...
Michael Daigle
09:54 AM Bug #4641: must support java 1.6
I don't think we should yet _require_ 1.6. It's great that it runs under it, however. ben leinfelder
09:52 AM Bug #4641: must support java 1.6
Metacat has been unit tested as:
-- Built using 1.6 and run in 1.6
-- Build using 1.5 and run in 1.6
I need to know...
Michael Daigle
09:57 AM Bug #4556: Fix cross platform TPC GUI issues
Converted tpc pages to table layout which works across IE7, 8 and firefox. Michael Daigle
09:56 AM Bug #4557: TPC Sanparks page content lenth issue
The new table layout handles this length issue. Michael Daigle
08:54 AM Revision 5189 (metacat): Add comments
daigle
08:54 AM Revision 5188 (metacat): make constants final
daigle

01/09/2010

04:13 PM Bug #4658 (Resolved): metacat runs out of memory
I parsed an EML 201 doc from:
http://knb.ecoinformatics.org/emlparser/parse
I got a java error to the effect that...
Margaret O'Brien

01/07/2010

01:46 PM Bug #4651 (Resolved): data packages losing data tables (and then finding them again)
This is on the dev server. I created soong.4 for the Kruger TPCs. soong.4.14 references four data tables containing... Oliver Soong
01:37 PM Revision 5187 (metacat): change dropdown select event to work on IE.
daigle
04:18 PM Revision 5186 (metacat): Fix the bug of http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4645. handleGetRevisionAndDocTypeAction will search both xml_documents and xml_revisions table.
It also changed some constrain in AccessionNumber when user update a document, of which all previous versions are in ... Jing Tao

01/06/2010

03:06 PM Bug #4649 (Resolved): Metacat couldn't update a document from client, which previous versions only stay in xml_revisions table
Metacat has document tao.14334.2 and tao.14334.1. However they all were deleted. That means they stay in xml_revision... Jing Tao
02:05 PM Revision 5185 (metacat): Fix main cross browser gui compatibility issues in sanparks tpc skin.
daigle
02:05 PM Revision 5184 (metacat): Fix main cross browser gui compatibility issues in sanparks tpc skin.
daigle
02:03 PM Revision 5183 (metacat): Remove commas from the end of lists because they break IE
daigle
11:41 AM Revision 5182 (metacat): remove the "optional" tip since it is not currently optional
ben leinfelder
11:39 AM Revision 5181 (metacat): add required authentication exception class so that the scheduler can compile
ben leinfelder
11:38 AM Revision 5180 (metacat): add properties expected by the DB property service
ben leinfelder
11:37 AM Revision 5179 (metacat): use workflowscheduler DB
ben leinfelder
04:07 PM Revision 5178 (metacat): use @class attribute for path queries rather than @name
ben leinfelder

01/05/2010

02:08 PM Revision 5177 (metacat): Add a sleep statement between getting the dtd from source and checking for it via url. Add method names to log output.
daigle

01/04/2010

02:30 PM Bug #4645 (Resolved): handleGetRevisionAndDocTypeAction should search both xml_documents and xml_revisions table
handleGetRevisionAndDocTypeAction API will return both revision and doctype for a given docid. Currently, it only sea... Jing Tao
10:43 AM Bug #4644: Convert build to pull eml from svn instead of cvs
tested locally. Putting on dev. Michael Daigle
10:11 AM Bug #4644 (Resolved): Convert build to pull eml from svn instead of cvs
updated build.xml to get eml from svn Michael Daigle
10:39 AM Revision 5176 (metacat): Get all eml code from svn instead of cvs
daigle
09:01 AM Revision 5175 (metacat): Log doc and rev query counts and times. Fix mis-spellings.
daigle
09:00 AM Revision 5174 (metacat): Log doc and rev query counts and times. Fix mis-spellings.
daigle

12/30/2009

09:24 AM Revision 5173 (metacat): remove extra open paren
daigle
09:22 AM Revision 5172 (metacat): remove call to print busy db connections
daigle
09:21 AM Revision 5171 (metacat): add xml_revisions docid index
daigle
09:20 AM Revision 5170 (metacat): Add debug to show sql
daigle
 

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