Activity
From 05/03/2008 to 06/01/2008
05/30/2008
- 01:34 PM Bug #3349: RExpression getUniqueFileName functionality is broken
- Fixed.
- added overloaded getUniqueFileName method that also takes portname as an argument.
- using this method, my... - 12:20 PM Bug #3349 (Resolved): RExpression getUniqueFileName functionality is broken
- My fix to bug #3324 has broken getUniqueFileName functionality, so e.g. if you have two actors with the same name (e....
05/29/2008
- 03:56 PM Bug #3324: RExpression actor doesn't output properly with >1 dataframe output port
- Sorry -- fix was checked in may 27, not yesterday.
- 03:54 PM Bug #3324: RExpression actor doesn't output properly with >1 dataframe output port
- Closing, I checked in a fix yesterday. Port name is now prefixed to filename when data is serialized to disk for data...
- 02:25 PM Bug #3339 (Resolved): directory param Browse button for External Execution actor doesn't work properly
- The 'Browse' button for the directory parameter for this actor doesn't allow you to select a directory -- only a file...
- 11:01 AM Bug #3333 (New): "configure actor" dialog box changes after "documentation->display"
- With a workflow loaded into Virgil, right click on an actor and select "Configure Actor". Note the contents of that d...
05/27/2008
- 08:56 PM Bug #3332: RExpression_Matrix_IO_Test workflow gives an error
- I should note I'm seeing that error on stdout, not in the gui.
I have the same version of R as you on both Ubuntu an... - 04:59 PM Bug #3332: RExpression_Matrix_IO_Test workflow gives an error
- what version of R are you running?
I've got:
R version 2.6.2 (2008-02-08)
Copyright (C) 2008 The R Foundation for St... - 04:54 PM Bug #3332 (Resolved): RExpression_Matrix_IO_Test workflow gives an error
- RExpression_Matrix_IO_Test workflow gives this error. This bug slipped into Kepler release too.
java.lang.NumberFo... - 11:53 AM Bug #3324 (Resolved): RExpression actor doesn't output properly with >1 dataframe output port
- If you configure the R actor to have more than 1 dataframe output port, only the last dataframe used is output throug...
05/22/2008
- 01:23 PM Bug #3312 (Resolved): DataTurbine (formerly RBNBToKepler) actor - error with empty server
- DataTurbine actor gives an error when trying to connect to a server that is running but contains no data channels. It...
05/16/2008
- 08:02 PM Bug #3300: CompositeActor does not support multiport
- You need to explicitly set the width of the input link inside the composite.
See below.
I've opened a RFE in Ptolem... - 04:06 PM Bug #3300 (Resolved): CompositeActor does not support multiport
- You can create a CompositeActor with input and output ports that are set as Multiports, but only the first value on t...
05/13/2008
- 12:13 PM Bug #3292: ENM/GDAL_h1K_NS workflow giving an exception
- Ah, I see comment #2 on bug 3291 now (general disclaimer in demos/Readme.txt for all workflows).
I will bump this to ... - 11:33 AM Bug #3292: ENM/GDAL_h1K_NS workflow giving an exception
SEEK/garpModel_ImageJ, also gives a similar "Can't load IA 32-bit..." problem on ubuntu 8.04.
ENM/GARP_Multispecies...- 12:10 PM Bug #3291: IPCC_ChangeNightlyBuildTest got an exception
- I have this problem too, on mac 10.5.2 and ubuntu 8.04.
- 11:43 AM Bug #3295 (New): Python/Ptolemnizer welcome text does not display
- A minor annoyance, but the SampleDelay actor's "Welcome to the..." text is not displaying in the InteractiveShell as ...
05/12/2008
- 06:04 PM Bug #3292 (New): ENM/GDAL_h1K_NS workflow giving an exception
- I upgraded to ubuntu 8.04 today, and now the GDAL_h1K_NS workflow is giving an exception (i'm using java 1.5.0_13).
... - 12:33 PM Bug #3290: DarwinCore_test workflow takes forever to downloading data
- I put a general disclaimer in the demos directory so that this will not delay the release.
- 12:33 PM Bug #3291: IPCC_ChangeNightlyBuildTest got an exception
- I put a general disclaimer in the demos directory so that this will not delay the release.
- 12:31 PM Bug #2872: md5 checksums
- done.
- 12:31 PM Bug #3122: Get installer size down
- Installer sizes are as follows:
-rw-r--r-- 1 berkley berkley 104866787 2008-05-12 11:04 kepler-linux-1.0.0.jar
-rw-... - 09:41 AM Bug #3266: ENM/GARP_MultipleSpecies-V.xml problems
- Matt and I have decided to go ahead an release these workflows with the
following annotation attached:
ATTENTION ENM...
05/09/2008
- 02:58 PM Bug #3290: DarwinCore_test workflow takes forever to downloading data
- change to 1.0.0
- 01:48 PM Bug #3290 (New): DarwinCore_test workflow takes forever to downloading data
- DarwindCore actor in demos/ENM/DarwindCore_test.xml work-flow takes forever to downloading data (more than two hours)...
- 02:58 PM Bug #3291: IPCC_ChangeNightlyBuildTest got an exception
- Change to 1.0.0
- 02:57 PM Bug #3291 (New): IPCC_ChangeNightlyBuildTest got an exception
- Running work-flow, demos/ENM/IPCC_Change_NightlyBuildTest.xml, got an exception. The supposed result is "true", but t...
- 11:33 AM Bug #3282: v3 installer intro says Kepler-1.0.0 1.0.0
- looks good in win/mac v4 installer
- 10:44 AM Bug #3282: v3 installer intro says Kepler-1.0.0 1.0.0
- It has gone in mac v4 installer.
- 11:23 AM Bug #3252: Ptolemy ack in installer splash screen has typos and was outdated
- Looks good in win and mac v4 installers
- 10:49 AM Bug #3252: Ptolemy ack in installer splash screen has typos and was outdated
- It looks good now in mac v4 installer.
- 11:17 AM Bug #3269: authentication system throws NPE
- It worked fine in mac v4 installer.
- 11:16 AM Bug #3271: Random Errors with data authentication system
- In mac v4 installer, it seemed fine.
- 11:07 AM Bug #3270: disable DIGIR Data Source by default
- works in mac v4 installer.
05/08/2008
- 05:40 PM Bug #3122: Get installer size down
- the files in lib/jar/base-jars/apache/xalan.jar (~1 MB) are included in lib/jar/jwsdp/xalan.jar (~7 MB) and could lik...
- 11:28 AM Bug #3122: Get installer size down
- I notice that standalone-compiler.jar (~4 mb) is still in the installer version. Not sure if this is needed after iz...
- 03:28 PM Bug #3266: ENM/GARP_MultipleSpecies-V.xml problems
- Chad - As the creator of this workflow, I should have great insights into what is wrong - but I don't!
I would guess ... - 01:35 PM Bug #3266: ENM/GARP_MultipleSpecies-V.xml problems
- This complex workflow depends on a lot of external dependencies. If any one of them fail, the workflow fails. I've ...
- 01:38 PM Bug #3269: authentication system throws NPE
- Looks ok here, we'll see what happens in the next installer...
- 09:25 AM Bug #3269: authentication system throws NPE
- Was able to see the errors on my local workspace version (thank goodness). I've added synchronized to the Ecogridser...
- 10:27 AM Bug #3253: IzPack Windows Installer should install in a directory with the version number
- i rechecked this and it is doing what it is supposed to do.
- 10:26 AM Bug #3248: .sh files should be removed for windows installer
- added a line to the install.xml and build.xml files to make sure the .sh
- 09:02 AM Bug #3283: Welcome splash screen shows up when starting windows kepler
- It doesn't show up if you have a .ptolemyII directory with a PtolemyPreferences.xml file in it. If you remove that d...
05/07/2008
- 09:59 PM Bug #3267: ENM/GARP_SingleSpecies_BestRuleSet-IV.xml problems
- this may again be that i didn't succeed with the expat and scew instructions, but after trying those instructions thi...
- 04:52 PM Bug #3267: ENM/GARP_SingleSpecies_BestRuleSet-IV.xml problems
- GARP_SingleSpecies_BestRuleSet-IV.xml runs on windows v3 installer and Mac os X v3 installer.
garpModel_ImageJ.xml ru... - 09:56 PM Bug #3266: ENM/GARP_MultipleSpecies-V.xml problems
- jing and ben - did you get ubuntu crashes after following the expat and scew instructions?
chad - i followed those bu... - 04:33 PM Bug #3266: ENM/GARP_MultipleSpecies-V.xml problems
- In windows v3 installer, runs for several minutes, generates several maps and then gives
ptolemy.kernel.util.Illegal... - 03:39 PM Bug #3266: ENM/GARP_MultipleSpecies-V.xml problems
- In ubuntu, it crashed keper twice:
****done with main garp algorithm*****
DONE Calling RunGarpAlgorithm in CPP Code.
... - 03:33 PM Bug #3266: ENM/GARP_MultipleSpecies-V.xml problems
- running this workflow on my linux box (ubuntu 7.10) crashes Kepler with no error shown nor logged to the log file.
- 06:42 PM Bug #3269: authentication system throws NPE
- Works on win v3 installer.
On mac when I did the search a second time, after restarting kepler, it hangs for a long ... - 03:40 PM Bug #3269: authentication system throws NPE
- works on ubuntu (v3 installer)
- 06:01 PM Bug #3268: Python/PythonFileLineCounter.xml workflow problem
- works on win and mac (v3 installer).
- 03:36 PM Bug #3268: Python/PythonFileLineCounter.xml workflow problem
- works on osx and ubuntu (v3 installer)
- 04:19 PM Bug #3264: workflow ENM/ASC2RAWTest gives an exception under ubuntu
- runs on windows and OSX (v3 installer)
- 03:33 PM Bug #3264: workflow ENM/ASC2RAWTest gives an exception under ubuntu
- Tried v3 in ubuntu, mac and windows. It works.
- 02:52 PM Bug #3264: workflow ENM/ASC2RAWTest gives an exception under ubuntu
- runs successfully (multiple times) on both OSX and Linux (v3 installer)
- 04:09 PM Bug #3261: ApplicationFramework/CredentialRetrieve workflow has problems
- verified, file has been removed from windows and mac v3 installer
- 04:01 PM Bug #3256: path problems on Mac with CommandLine demo workflows
- looks good in Mac and win (v3 installer)
- 03:29 PM Bug #3256: path problems on Mac with CommandLine demo workflows
- both work flows worked in Mac
- 02:41 PM Bug #3256: path problems on Mac with CommandLine demo workflows
- ran both demos in OSX - worked great (v3 installer).
- 03:46 PM Bug #3254: Annotations for some Ptolemy demos are not wrapped
- The SDF Expression annotation looks good. I ran through all the SDF demos. SynthesizedVoice.xml cannot find the file...
- 03:40 PM Bug #3270: disable DIGIR Data Source by default
- works on OSX and ubuntu (v3 installer)
- 03:27 PM Bug #3253: IzPack Windows Installer should install in a directory with the version number
- C:\Program Files\Kepler-1.0.0 in windows v3 installer. Looks good.
- 03:04 PM Bug #3253: IzPack Windows Installer should install in a directory with the version number
- I got the same result as ben in mac and linux.
In windows, i got c:\Porgram Files\Kepler-1.0.0.
but in the menu, we ... - 02:33 PM Bug #3253: IzPack Windows Installer should install in a directory with the version number
- i get /Applications/Kepler-1.0.0 in OSX
and /home/leinfelder/Kepler-1.0.0 in linux
as defaults with the v3 installer ... - 03:26 PM Bug #3283 (Resolved): Welcome splash screen shows up when starting windows kepler
- In mac and linux, the Welcome splash screen doesn't show up when user starts kepler. However, in windows version, I d...
- 03:12 PM Bug #3248: .sh files should be removed for windows installer
- we ended up creating a kepler-console.bat file which launches kepler with a console window. we also updated kepler.e...
- 03:00 PM Bug #3248: .sh files should be removed for windows installer
- kpeler.sh is in kepler-1.0.0 dir. But i don't have an cgwin, I didn't run it.
- 02:53 PM Bug #3248: .sh files should be removed for windows installer
- (v3 installer)
running ./kepler.sh in cygwin on win xp doesn't work for me.
Verified keplerexecute.sh is gone.
kepler... - 02:54 PM Bug #3252: Ptolemy ack in installer splash screen has typos and was outdated
- this didn't get checked into the branch. it's in there now.
- 02:47 PM Bug #3252: Ptolemy ack in installer splash screen has typos and was outdated
- It is still a issue in windows,mac and linux installer.
- 02:30 PM Bug #3252: Ptolemy ack in installer splash screen has typos and was outdated
- this is still a problem in the linux and OSX v3 installers
- 02:51 PM Bug #3282: v3 installer intro says Kepler-1.0.0 1.0.0
- ok, i just fixed this.
- 02:30 PM Bug #3282 (Resolved): v3 installer intro says Kepler-1.0.0 1.0.0
- v3 installer intro says:
Welcome to the installation of Kepler-1.0.0 1.0.0! - 02:41 PM Bug #3247: Documentation intro screen typo
- looks good in windows (v3 installer)
- 02:26 PM Bug #3247: Documentation intro screen typo
- verified in OSX, linux (v3 installer)-BRL
- 02:38 PM Bug #3246: Typo in Documentation Screen
- Looks good in windows
- 02:32 PM Bug #3246: Typo in Documentation Screen
- Fixed in mac and linux
- 02:28 PM Bug #3246: Typo in Documentation Screen
- checked in linux and OSX. i also re-read the entire doc-index page and checked all of the links. everything seems ok.
- 02:25 PM Bug #3246: Typo in Documentation Screen
- verified in OSX, linux (v3 installer)-BRL
05/06/2008
- 03:51 PM Bug #3278: Search result count is inflated when using both KNB sources ([un]authenticated)
- I'm going to push this to 1.1. Since the auth query is off by default, it will rarely be seen and it's purely a cosm...
- 02:48 PM Bug #3278 (New): Search result count is inflated when using both KNB sources ([un]authenticated)
- The results get merged and duplicates are not shown in the result list, but the count does not match the results show...
- 02:45 PM Bug #3271: Random Errors with data authentication system
- closing this bug - not seeing crazy authentication errors nor race conditions when using the authenticated query.
wil... - 10:07 AM Bug #3271: Random Errors with data authentication system
- changed the ldap authentication gui to get away from static method calls (in favor of singleton getInstance calls tha...
- 02:42 PM Bug #3277 (Resolved): Create reusable jython-based SelectionDialog actor to collect runtime parameters
- Dan (Higgins) did a prototype of this use of the PythonScript actor to create Swing interfaces for displaying drop do...
- 02:02 PM Bug #3276: MatlabExpression not finding ptmatlab.dylib
- fixed bug in ptII code that was causing this.
- 02:00 PM Bug #3266: ENM/GARP_MultipleSpecies-V.xml problems
- added a note in the workflow and in the README about scew and expat on linux.
- 01:59 PM Bug #3267: ENM/GARP_SingleSpecies_BestRuleSet-IV.xml problems
- I added a note in the README and in the workflow itself about scew and expat for linux.
- 11:29 AM Bug #3267: ENM/GARP_SingleSpecies_BestRuleSet-IV.xml problems
- I was finally able to reproduce the crash on ubuntu by installing a fresh version of ubuntu in a VM and running keple...
- 10:10 AM Bug #3273: Improve authentication dialogue so that the reason for authentication is clear
- Now that some of the threading issues are being hammered out, this should be easier to work with.
Adding a message ar... - 10:04 AM Bug #3269: authentication system throws NPE
- actually found that this bug still existed as an artifact of multiple login dialogues appearing when concurrent threa...
05/05/2008
- 05:19 PM Bug #3274: IPCC_Base_Layers.xml work-flow gets out of memeory error
- At end of January 2008, the src/org/ecoinformatics/ecogrid/queryservice/QueryServiceGetToStreamClient.java class some...
- 01:01 PM Bug #3274: IPCC_Base_Layers.xml work-flow gets out of memeory error
- 5M is a typo :)
- 12:47 PM Bug #3274: IPCC_Base_Layers.xml work-flow gets out of memeory error
- heap size was 512M, not 5M; so I hope that is a typo in comment #1
- 12:35 PM Bug #3274: IPCC_Base_Layers.xml work-flow gets out of memeory error
- Previously this workflow worked OK (during training in Jan 2008) so heap space usage would appear to be a 'new' probl...
- 12:18 PM Bug #3274 (Resolved): IPCC_Base_Layers.xml work-flow gets out of memeory error
- When this work-flow tried to download 10 big data files, it can finish part of downloading - maybe 6 and the rest 4 w...
- 03:23 PM Bug #3275: EML200DataSource interface
- HIstorical Note: The EML 2 Dataset actor was added to the tree mainly for use in displaying local file based data pac...
- 01:15 PM Bug #3275 (New): EML200DataSource interface
- 1)When you drag an EML 2 Dataset actor to canvas and Configure Actor, you're presented with different parameters than...
- 03:15 PM Bug #3276 (Resolved): MatlabExpression not finding ptmatlab.dylib
- MatlabExpression actor is not finding ptmatlab.dylib on the mac, after setting DYLD_LIBRARY_PATH=/Applications/MATLAB...
- 03:12 PM Bug #3266: ENM/GARP_MultipleSpecies-V.xml problems
- got this to work on windows and mostly on linux. it wasn't working due to the setting of the .kepler directory as th...
- 02:03 PM Bug #3266: ENM/GARP_MultipleSpecies-V.xml problems
- workflow completes successfully on OSX
- 01:50 PM Bug #3266: ENM/GARP_MultipleSpecies-V.xml problems
- this workflow crashes on windows almost immediately after beginning execution. on ubuntu, it doesn't crash until alm...
- 12:35 PM Bug #3269: authentication system throws NPE
- this now works in the cvs branch and in a new installer i just created. closing this bug.
- 10:03 AM Bug #3273 (Resolved): Improve authentication dialogue so that the reason for authentication is clear
- As it exists currently, the LDAP authentication mechanism is reused for a number of authentication scenarios. It is ...
- 09:50 AM Bug #2960: Change RExpression actor to use meaningful graphic file output names
- During the follow up meeting, we decided to use the following approach for the R expression file output:
For each run...
05/04/2008
- 11:32 AM Bug #3269: authentication system throws NPE
- i can recreate this error in the installer version of kepler, but not in my local development version (using release ...
- 10:45 AM Bug #3271: Random Errors with data authentication system
- I am able to start an authenticated query, hit cancel when prompted for login (once for each document type being sear...
- 10:38 AM Bug #3270: disable DIGIR Data Source by default
- i've committed changes to the release branch that allow the selection status of the services to be preserved when the...
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