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From 12/29/2010 to 01/27/2011

01/27/2011

01:49 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
I did work on this for bug#5099 . Attempting to open a kar with unsatisfied mod deps now prompts the user to download... Derik Barseghian
12:26 PM Bug #5120: Provide a toggle for automatic updates
David implemented a toggle for checking for patches on startup, should this be closed now? Was a conclusion reached w... Derik Barseghian
05:01 PM Bug #5248: downloading non-public kars from Search Components doesn't work
So we don't forget: the changes to always use authenticated query and gets necessitate a fix to an xslt file --Jing f... Derik Barseghian

01/26/2011

01:57 PM Bug #5272: kepler 2.1 suite can not be started using 'ant run'
Another user tried to build kepler execution eninge base on kepler-2.1
but he get the same error.
Jing Tao
11:32 AM Bug #5283: UI for saving workflows as xml is confusing
We discussed this extensively before 2.1. My 2 cents:
The main issue is that the xml format is incomplete and does ...
Matt Jones
11:24 AM Bug #5283 (Resolved): UI for saving workflows as xml is confusing
The following comments were relayed to me by a group of users running Kepler 1.0, and trying 2.x for the first time:
...
Daniel Crawl
11:31 AM Bug #5129: adding and removing configuration properties could be made easier
I'm reopening this -- now that this directive solution has been implemented, someone needs to utilize it to update th... Derik Barseghian
11:23 AM Bug #5282 (Resolved): Documentation updates for 2.2
Docs need to be updated for 2.2 Derik Barseghian
11:19 AM Bug #5281 (New): cannot open 1.0 KARs
KARs created in Kepler 1.0 cannot be opened.
An example is 04-HelloWorld.kar in the outreach module:
[run] WARN...
Daniel Crawl
11:18 AM Bug #5280 (Resolved): missing command line execution for KAR files
KAR files cannot be used with kepler.sh.
The workflow in a KAR cannot be run with any of the -gui/-nogui, -cache/-...
Daniel Crawl
11:14 AM Bug #5279 (Resolved): HSQL databases use default account
The HSQL databases should not use the default account name and password. Daniel Crawl
11:12 AM Bug #5278 (Resolved): HSQL database is shared between users
Kepler starts an HSQL database server so that multiple instances of Kepler can run on the same machine. (For more inf... Daniel Crawl
04:49 PM Bug #5277 (Resolved): remove test servers from Sources preferences
Before release we need to remove the test server options from Components and Data search. Derik Barseghian
04:30 PM Bug #4430: hsql database name and port in Kepler should be configurable
The ports and names are set in the configuration files:
common/resources/configurations/configuration.xml
core/resou...
Daniel Crawl
04:15 PM Bug #5276: component search performance is poor
Components search can also fail because of a java.lang.OutOfMemoryError. Here are two examples stacktraces
searching...
Derik Barseghian

01/25/2011

03:33 PM Bug #5248: downloading non-public kars from Search Components doesn't work
no-frills fix in r26836.
Going to test/talk with jing and matt before closing.
Derik Barseghian

01/24/2011

02:37 PM Bug #5274: Trying to schedule workflow with report layout puts up prompt about no report layout
The problem is when kepler evaluated the type in a kar entry, it used "equals" "ReportLayout". When we uses "contains... Jing Tao
02:21 PM Bug #5276 (New): component search performance is poor
Searching for remote KARs through the Components pane is very slow -- search downloads and deals with karXML, each ge... Derik Barseghian
02:10 PM Bug #5248: downloading non-public kars from Search Components doesn't work
Discussed with Matt, I'll take this one. Derik Barseghian
10:29 AM Bug #4324: ptII/module-info/revision.txt not being updated
I also added the same information as above to the Kepler Project wiki: https://kepler-project.org/developers/referenc... Sean Riddle
10:25 AM Bug #4324: ptII/module-info/revision.txt not being updated
A cron job has been started on lore.genomecenter.ucdavis.edu to run 'ant validate-ptolemy' every midnight. The revisi... Sean Riddle

01/21/2011

01:07 PM Bug #5275: Executing sensor-view workflow records provenance
Works. On import provenance turns off, and attempting to turn it back on, even during execution of sensor workflow, i... Derik Barseghian
12:34 PM Bug #5275: Executing sensor-view workflow records provenance
Should be fixed. Derik, please check. Daniel Crawl

01/20/2011

09:11 PM Bug #5248: downloading non-public kars from Search Components doesn't work
A) I don't believe it makes sense to have non-public entries showing up in the public searches. I can see how this er... ben leinfelder
06:07 PM Bug #5248: downloading non-public kars from Search Components doesn't work
My changes in r26708 are probably worth looking at when looking at this bug. Derik Barseghian

01/19/2011

03:37 PM Bug #5275 (Resolved): Executing sensor-view workflow records provenance
Executing a sensor view workflow isn't supposed to record data to provenance because the director is DE.
Replicate...
Derik Barseghian
03:01 PM Bug #5153: Save As... closes all windows associated with a workflow
Pushing further investigation on this enhancement to 2.3. As reported by Aaron, this does not appear to be a current ... David Welker
01:08 PM Bug #5263: failure to restart after upgrade from 2.0 to 2.1
Added documentation. This should not be a problem going forward, due to a change in how the module manager works. David Welker
12:44 PM Bug #4801: out of memory
Postponing to 2.3. David Welker
12:43 PM Bug #5249: test kepler for memory leaks
Postponing to 2.3. David Welker
12:43 PM Bug #4642: memory usage & slowdowns
Postponing to 2.3. David Welker
12:41 PM Bug #5258: kepler start exception when soft links are in KeplerData/workflows/MyWorkflows
Since this is an obscure problem that isn't likely to occur in the normal use of Kepler, postponing. David Welker
12:27 PM Bug #5272: kepler 2.1 suite can not be started using 'ant run'
It might not be a block for kepler 2.2 installation package release. But many users download kepler based on release-... jianwu jianwu

01/17/2011

05:43 PM Bug #5129: adding and removing configuration properties could be made easier
I have added the ability to make what I call add directives. For example, in a module, if you add a new folder called... David Welker

01/14/2011

02:56 PM Bug #5219: problems when semantically annotating or tagging a composite actor
This is expected behavior. The tag bar displays all tags on the top-level
workflow. The semantic annotation pane, how...
Sean Riddle
02:47 PM Bug #4988: Instantiating a wf as a composite that has a tag doesn't work as expected
(In reply to comment #0)
> However if I tag a workflow, Save Archive it into my local repo workflows
> folder, then f...
Sean Riddle
08:43 AM Bug #5272: kepler 2.1 suite can not be started using 'ant run'
I will look into this bug soon. However, it certainly is not a release blocker for 2.2. Reclassifying. David Welker
04:07 PM Bug #5274 (Resolved): Trying to schedule workflow with report layout puts up prompt about no report layout
To reproduce:
create a workflow
create a report design
File-> Save to kar
Tools->Workflow Scheduler
Find and sel...
Derik Barseghian

01/12/2011

03:52 PM Bug #5272 (Resolved): kepler 2.1 suite can not be started using 'ant run'
Today, one partner tried to start Kepler 2.1 through build-area and failed.
We first tried the build-area at https...
jianwu jianwu
02:28 PM Bug #5260: Problems with unknown free-form tags
I fixed the ColoredListCellRenderer exception (r26677) and have not observed the other exception. Closing for now, un... Sean Riddle
01:45 PM Bug #5260: Problems with unknown free-form tags
(In reply to comment #2)
> Also when opening the kar with free-form tag that's no longer 'in the system'
> because of...
Sean Riddle
01:43 PM Bug #5260: Problems with unknown free-form tags
Thanks Sean. Things work for me too -- up until the very last step of the above procedure: when I click on different ... Derik Barseghian
12:57 PM Bug #5260: Problems with unknown free-form tags
Orphaned tags can now be properly deleted (as of r26636). After fixing the bug, I was unable to reproduce any of the ... Sean Riddle
02:10 PM Bug #5271 (New): No-gui mode needs a way to access private data source
When kepler normally executes a workflow which has actors to access the private data, kepler will prompt a login dial... Jing Tao

01/11/2011

02:00 PM Bug #5190: 6.0WorkingWithDatasets describes OPeNDAP but not DataTurbine actor
Added new DataTurbine actor documentation section to 6.0WorkingWithDatasets.
Whoever updates documentation for 2.2 re...
Derik Barseghian
02:11 AM Bug #5270 (Resolved): No menu bar and labels when non-default locale is set
When system's locale is set to other value than en_US, then Kepler starts without menu bar and buttons don't have lab... Tomasz Żok
05:02 PM Bug #5095: test kepler and wrp for memory leaks
based on the comments 22 and 23, I think it is really hard to fix all memory leaks in Kepler by the code freeze date ... jianwu jianwu

01/08/2011

04:43 PM Bug #5095: test kepler and wrp for memory leaks
Coming up to speed on this.
I've added a step-by-step example of using jvisualvm to find memory leaks. You can find...
Aaron Aaron

01/07/2011

10:20 AM Bug #5095: test kepler and wrp for memory leaks
I'm not that surprised that there is a memory leak in the GUI when
a simple model is run just in Ptolemy, outside of ...
Christopher Brooks
04:37 PM Bug #5095: test kepler and wrp for memory leaks
My tests show Kepler has memory leaks for "workflow open, execution and close" and "workflow open, edit and close". M... jianwu jianwu
05:07 AM Bug #5269: Selectordialog and Case actors do not work well together
RExpression converts the string array to a string scalar. Expression does not. Robert Weber
04:54 PM Bug #5269 (New): Selectordialog and Case actors do not work well together
The Selectordialog actor in Kepler outputs a strange sort of string array that cannot be cast or converted into a str... Robert Weber

01/06/2011

11:31 PM Bug #5191: GUI improvements to Save As
BTW - org.kepler.gui.util.ExtensionFileFilter is very similar to
diva.gui.ExtensionFileFilter.
I cleaned up a few cl...
Christopher Brooks
05:56 PM Bug #5191: GUI improvements to Save As
fixed at r26641.
Turns out Kepler has its own ExtensionFileFilter that I previously missed , which is different fro...
Derik Barseghian
05:14 PM Bug #5268 (New): Dragging modified version of Sinewave actor to canvas causes gui oddity
While testing http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5146 , I came across some gui strangeness. To replic... Derik Barseghian
05:04 PM Bug #5267 (New): Changing a ptolemy.kernel.util.Attribute in Kepler gui doesn't work
While testing http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5146 , I notice if I drag the Sinewave actor to canv... Derik Barseghian
04:55 PM Bug #5266 (Resolved): Two empty boxes inside Sinewave actor and other icon problems for attributes
While testing http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5146 , this bug was found.
From the Reporting suite...
Derik Barseghian
04:39 PM Bug #5146: modifying and saving the composite sinewave actor fails
Derik tested this too and it looks like the specific issue described here has been fixed. We noticed a few other fun... Aaron Aaron

01/05/2011

03:07 PM Bug #5146: modifying and saving the composite sinewave actor fails
i agreed to test this... Derik Barseghian
02:40 PM Bug #5095: test kepler and wrp for memory leaks
status update: after the check in yesterday at version 26623, now there is no big memory leak for window open and clo... jianwu jianwu
08:16 AM Bug #5265: Kepler 2.1.0 has omitted the Publish & subscribe actors from Ptolemy
I found my error (case sensitivity) and am now a happy camper. Sorry to have bothered you. Robert Weber
07:23 AM Bug #5265 (Resolved): Kepler 2.1.0 has omitted the Publish & subscribe actors from Ptolemy
This complementary pair of actors is not present in version 2.1.0 of Kepler for the Mac. I've been trying to "instant... Robert Weber
11:53 PM Bug #5101: Composite Actor windows show wrong title after workflow Rename
Aha, I finally tracked this down. The issue was that the Effigy for the ComponentEntity has a special StringAttribut... Aaron Aaron
04:09 PM Bug #5258: kepler start exception when soft links are in KeplerData/workflows/MyWorkflows
The open dialog now starts at the last used directory. Daniel Crawl

01/04/2011

03:22 PM Bug #5129: adding and removing configuration properties could be made easier
I have made changes to the configuration manager, so that any completely new configuration that is in the active modu... David Welker

01/03/2011

12:39 PM Bug #4693: Ability to save just a report instance
Sure it would be nice to have the File->Export PDF... option, same as File->Print...
Similarly it would be nice if th...
ben leinfelder
12:23 PM Bug #4693: Ability to save just a report instance
Trunk now has a working Save pdf button on the report viewer tab, but leaving this open for feedback -- should this b... Derik Barseghian
12:19 PM Bug #5087: Image report items aren't shown when original image path doesn't resolve
This was merged into trunk. Just tested, works. Derik Barseghian
12:03 PM Bug #4694: workflow run manager - differentiate imported runs
This is done. Derik Barseghian
12:00 PM Bug #5083: possible to save a kar that loses the report layout
This was merged into trunk.
Still need to look into removing stopgap.
Derik Barseghian
11:46 AM Bug #5164: Don't show Workflow Run Manager and tag workflow drop-down list on Schedule tab of Workflow Scheduler view
This bug is no longer relevant. Derik Barseghian
11:26 AM Bug #4473: Add WRM to bottom of report viewer for navigation
Closing this old bug. Derik Barseghian
 

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