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From 04/25/2008 to 05/24/2008

05/24/2008

05:48 PM Revision 3914 (metacat): Check into cvs head. Change version to 1.8.1
Jing Tao
05:11 PM Revision 3912 (metacat): Check into cvs head. Change the startup information from 1.8.0 to 1.8.1.
Jing Tao
05:07 PM Revision 3909 (metacat): checked into cvs head: replace eml-201-tag to eml-201-style-tag in getConversionalXSL.
Jing Tao
05:02 PM Bug #2644: The edit feature in the NCEAS Data Repoistory does not work
The crashing forms and keywords are fixed, the larger issues have been pushed into #3319. This is sufficiently fixed... Shaun Walbridge
05:00 PM Bug #3319 (Resolved): Edit feature doesn't work on documents with uneditable fields
Continuation of the problem mentioned in #2644: Documents uploaded through Morpho can't be edited through the web for... Shaun Walbridge

05/23/2008

01:13 PM Bug #3218: nceas skin front page has font size differences
Fixed for 1.8.1 release, added single CSS class for td elements on index page. Shaun Walbridge
01:13 PM Bug #3218: nceas skin front page has font size differences
Fixed for 1.8.1 release, added single CSS class for td elements on index page. Shaun Walbridge
11:37 AM Bug #3014: Expose permission options for registry uploads
Fixed in 1.8.1 release, Javascript-based permissions option for public private. Ignoring the group issue for now. Shaun Walbridge

05/22/2008

04:22 PM Revision 3904 (metacat): Check into cvs head. Add a debug statement for printing out eml document
Jing Tao
02:19 PM Bug #2564: escaped "less than" in inlinedata causes invalid eml output
Here is some thought from Duane:
Hi Jing,
Thanks for looking into this further. This seems like a complex problem.
...
Jing Tao
01:45 PM Bug #2564: escaped "less than" in inlinedata causes invalid eml output
I inserted an eml document into metacat and here is the content before
xerces parsing it:
<?xml version="1.0"?><eml:...
Jing Tao

05/21/2008

12:55 PM Bug #3176: Verify existing token changes to skins
ESA site does not work correctly
The Moderator feature does not work the same as the production one. It is also very...
Callie Bowdish
10:24 AM Task #3306 (Closed): NCEAS skin account creation needs more thought
After creating an unaffiliated account on the NCEAS skin "Create a new account" link you get the message below. It do... Callie Bowdish
09:04 AM Bug #3296: Replication: Many EML documents fail to replicate
Of the 1016 EML documents that fail to replicate from LNO to KNB, we identified 611 that are directly related to lite... Duane Costa

05/20/2008

10:45 AM Bug #3304: Replication: Timed replication failures occur twice instead of once
The bug was fixed.
The problem is in ReplicationHanlder.update() method.
Before,the code looks like:
XMLReader pars...
Jing Tao
05:09 PM Bug #3304: Replication: Timed replication failures occur twice instead of once
*** Bug 3303 has been marked as a duplicate of this bug. *** Jing Tao
06:46 PM Revision 3898 (metacat): Check into cvs head. In handle replication list method, parser will be intialized every time when it handles a list from another server.
Jing Tao
06:45 PM Revision 3897 (metacat): Check into head. Add a new method to get server name.
Jing Tao
05:32 PM Bug #3176: Verify existing token changes to skins
I think the reason is we didn't put the password into the .cfg files. Now I put them into esa.cfg and nrs.cfg.
Call...
Jing Tao
05:09 PM Bug #3303: In KNB server, metacat request two times replication if first replication failed.
It is duplicated one of 3304.
*** This bug has been marked as a duplicate of bug 3304 ***
Jing Tao

05/19/2008

03:49 PM Bug #3176: Verify existing token changes to skins
The login and form submission parts of the ESA, NRS, and OBFS are not working correctly. After submitting a form on t... Callie Bowdish
02:28 PM Bug #3304 (Resolved): Replication: Timed replication failures occur twice instead of once
This bug was first described in #3296, however I am opening a separate bug report for it because #3296 is more specif... Duane Costa
02:27 PM Bug #3303 (Resolved): In KNB server, metacat request two times replication if first replication failed.
This is a subset of bug 3296.
Here is the description copied from there:
A secondary bug seems to be that each of t...
Jing Tao
09:34 AM Bug #3259: Add fields used in Morpho search to the default indexPaths property
these have been added to the build.properties file in the 1.8.1 branch ben leinfelder
08:50 AM Revision 3881 (metacat): Added missing "/" from ascii-treeview.xsl path so documents can be viewed in treeview. (Ticket 3176)
daigle
08:44 AM Revision 3880 (metacat): remove extra "/" from config-dir path (ticket 3176)
daigle

05/16/2008

03:35 PM Bug #3296: Replication: Many EML documents fail to replicate
Some additional analysis of the replication errors:
A total of 1016 EML documents fail to replicate from LNO to KNB....
Duane Costa
11:22 AM Revision 3879 (metacat): Check into cvs head. Modify some query string.
Jing Tao
09:18 AM Bug #3176: Verify existing token changes to skins
callie: ldapweb.cgi wasn't installed in dev. I just intsalled it.
However, when i click the the link, there is still...
Jing Tao
08:44 AM Bug #3176: Verify existing token changes to skins
login feature for nrs, esa, obfs has header problem with the create a new password, and reset password sections.
Whe...
Callie Bowdish
06:30 PM Revision 3877 (metacat): Check into cvs head. Remove the double quotes in muser, mpassword and et al.
Jing Tao
06:25 PM Revision 3875 (metacat): Check into cvs head. Add initialize option statment at the beginging of the class.
Jing Tao
05:43 PM Revision 3873 (metacat): Check into cvs head. Add the statement to initialize option.
Jing Tao
05:13 PM Revision 3870 (metacat): Check into cvs head. Move the initialize option statement to the begining of class.
Jing Tao

05/15/2008

04:59 PM Revision 3868 (metacat): Checkinto cvs head.Move the initialize option statement to the begining of class, since user name is using getting option.
Jing Tao
11:04 AM Bug #3176: Verify existing token changes to skins
Looks like the register-dataset part needs looking at too. From the nrs skin a clicked on register data set after log... Callie Bowdish
10:04 AM Bug #3176: Verify existing token changes to skins
obfs, nrs, esa skin have problems with displaying the header, the South African skins need to be checked too.
Here i...
Callie Bowdish

05/14/2008

02:59 PM Bug #3241: Update older invalidated eml201 document in Metacat
Margaret confirmed that there only one difference between the two versions of eml-resource.xsd;
Hi Jing -
I did the m...
Jing Tao
02:57 PM Bug #3241: Update older invalidated eml201 document in Metacat
The new class will put into initialize method in MetacatServlet class. A new property named eml201_document_corrected... Jing Tao
02:51 PM Bug #3176: Verify existing token changes to skins
Some of the skins xml files were missing a leading "/" on the path to the acsii-treeview.xsl file. This means the de... Michael Daigle
02:46 PM Bug #3176: Verify existing token changes to skins
Removed the extra "/" in the config-dir path. This wasn't hurting anything, but it made it look like something didn'... Michael Daigle
02:50 PM Bug #3297: An error message happen during the metacat start up
This message was caused by put EML201DocumentCorrector in initialize method. In EML201DocumentCorrector class, a db c... Jing Tao
02:35 PM Bug #3239: metacat using illegitimate versions of EML schemas
following above plan and it is done. I wrote a script to compare schema file and the result shows now they are same t... Jing Tao
02:13 PM Revision 3864 (metacat): Check in to cvs head. Don't close db connection before returning the connection pool.
Jing Tao
01:29 PM Bug #3296: Replication: Many EML documents fail to replicate
Jing and I investigated further. Here's what we've learned so far:
(1) Many of the EML documents that fail to be rep...
Duane Costa
11:01 AM Bug #3296: Replication: Many EML documents fail to replicate
it seems we need to correct local documents in lter. it has no relation to the release. So i postpone it to 1.9 Jing Tao
11:36 AM Bug #2517: Charset bug: > "less than" symbol does not display correctly
Change milestone to 1.8.1 Jing Tao
11:36 AM Bug #2797: Character set (charset) problem when filling out form
Change the milestone to 1.8.1 Jing Tao

05/13/2008

03:32 PM Bug #3297 (Resolved): An error message happen during the metacat start up
When i started metacat, i saw this message:
[ERROR]: Error in MetaCatServlet.checkIndexPaths: An I/O error occured w...
Jing Tao
03:15 PM Bug #3296: Replication: Many EML documents fail to replicate
I almost forgot this bug! Thanks for input it. Can you join to irc on tomorrow? Jing Tao
02:37 PM Bug #3296 (Resolved): Replication: Many EML documents fail to replicate
Over 1000 EML documents fail to replicate from LTER Metacat to KNB Metacat during every timed replication, currently ... Duane Costa
03:09 PM Revision 3859 (metacat): Add to cvs headd. Add code to correct invalidated eml 201 doucments.
Jing Tao
03:07 PM Revision 3858 (metacat): Add to cvs head. Change the run method signature.
Jing Tao
03:06 PM Revision 3857 (metacat): Add to cvs head. Add new flag to indicate if eml201 were correct or not.
Jing Tao
12:36 PM Bug #3263: Private data cannot be downloaded from metadata display page (xsl)
NOTE: Remember to clear out the EML schema and style sheets that are copied into Metacat when building this on dev (a... ben leinfelder
12:32 PM Bug #3263: Private data cannot be downloaded from metadata display page (xsl)
added the sessionid parameter in eml-settings.xsl and retagged it to RELEASE_EML_2_0_1_UPDATE_6 so that it can be ret... ben leinfelder
10:47 AM Bug #3260: Cannot update FGDC metadata documents in SANParks/SAEON skin
postpone ben leinfelder

05/12/2008

04:16 PM Bug #3241: Update older invalidated eml201 document in Metacat
Ran the above class file in dev.nceas. It took 2 minutes to finish the task successfully. Jing Tao
02:33 PM Bug #3241: Update older invalidated eml201 document in Metacat
Developed a new class named EML201DocumentCorrector class in metacat.
This class will run those three sql commands i...
Jing Tao
09:54 AM Bug #1787: Need to clean out metaact of test and bunk data packages
This is something I try and do periodically. This group of data packages, listed, should be gone. Callie Bowdish

05/09/2008

05:15 PM Revision 3827 (metacat): Checkin to head. Remove this class from Runnable and add sql to delete extral nodes in xml_nodes_revision table.
Jing Tao

05/08/2008

04:40 PM Bug #3241: Update older invalidated eml201 document in Metacat
In oder to make sure 'system' ATTRIBUTE node doesn't have any child node, I ran this query in knb server:
select coun...
Jing Tao

05/05/2008

08:46 AM Bug #3241: Update older invalidated eml201 document in Metacat
This will probably be ok, unless you delete a node that has a child node in the table. Does the 'system' ATTRIBUTE n... Matt Jones

05/02/2008

04:00 PM Bug #3272 (New): Add Keywords for SANParks and SAEON when uploading spatial data
Use the constrained keywords based on what skin is used when uploading spatial [meta]data:
SANParks, South Africa
...
ben leinfelder
03:59 PM Bug #3241: Update older invalidated eml201 document in Metacat
To my understanding, Attribute "system="document"" in element "references" is the only extra stuff which need to be r... Jing Tao
03:41 PM Revision 3818 (metacat): Modify the delete xml_index table query.
Jing Tao
05:10 PM Bug #3262: New documents explicitly set as public access don't show up correctly
This bug refers to the Token_Replacement branch, which we'll be folding into HEAD before 1.9. I think we don't need ... Shaun Walbridge

05/01/2008

04:51 PM Revision 3817 (metacat): Add a new target to run the patch which will correct eml201 documents.
Jing Tao
04:47 PM Revision 3816 (metacat): Add code to execute sql command and finish the task.
Jing Tao
04:10 PM Revision 3815 (metacat): Fixed syntax error: no ; at an end of import statement.
Jing Tao
03:39 PM Bug #3262: New documents explicitly set as public access don't show up correctly
I just inserted a public readable document into dev. And i can search it as public user.
The metacat code which has...
Jing Tao
02:39 PM Bug #3262 (Resolved): New documents explicitly set as public access don't show up correctly
In our SANParks training, we created new EML document through Morpho, and uploaded them against machines running the ... Shaun Walbridge
02:46 PM Bug #3263 (Resolved): Private data cannot be downloaded from metadata display page (xsl)
when viewing metadata through the common EML XSL, private data cannot be downloaded (sessionid is not being passed).
...
ben leinfelder
05:28 PM Bug #3260 (Resolved): Cannot update FGDC metadata documents in SANParks/SAEON skin
Uploading a new xml file to update the fgdc metadata results in an error (even though it looks like it was successful... ben leinfelder
05:18 PM Revision 3814 (metacat): A class to correct invalid eml201 documents. Metacat 1.8.0 and ealier version points incorrect eml-resource.xsd. We need fix eml documents.
Haven't done yet. Jing Tao

04/30/2008

03:32 PM Bug #3259: Add fields used in Morpho search to the default indexPaths property
Paths to add:
taxonomicClassification/taxonRankValue
taxonomicClassification/taxonRankName
northBoundingCoordinate
so...
ben leinfelder
03:22 PM Bug #3259: Add fields used in Morpho search to the default indexPaths property
here is a sample of the pathquery generated in Morpho
<?xml version="1.0"?>
<pathquery version="1.2">
<local_searc...
ben leinfelder
03:17 PM Bug #3259 (Resolved): Add fields used in Morpho search to the default indexPaths property
Compound searches issued from Metacat (with "combine constraints from all tabs") uses certain EML elements in the pat... ben leinfelder
02:51 PM Bug #3258 (Resolved): Update dataknp.sanparks.org packageId attributes to match Metacat Ids
When the SANParks, South Africa and Kruger National Park, South Africa keywords were added (in bulk) to the dataknp.s... ben leinfelder
05:11 PM Bug #3249 (Resolved): Install web registry for SANParks and SAEON skins
Should target for deployment on top of the 1.8.0 deployment currently on the dataknp.sanparks.org server.
Include dr...
ben leinfelder

04/29/2008

08:49 PM Revision 3808 (metacat): New version of KNB architecture diagram, in OmniGraffle and PNG formats, with subset diagrams for morpho, metacat and web in png formats.
Matt Jones

04/25/2008

04:21 PM Bug #3239: metacat using illegitimate versions of EML schemas
In build.xml, two new properties were created:
<property name="eml2_0_1-schema-tag" value="RELEASE_EML_2_0_1" />
<pro...
Jing Tao
11:45 AM Bug #3239: metacat using illegitimate versions of EML schemas
ben, yes. see bug http://bugzilla.ecoinformatics.org/show_bug.cgi?id=1601 Jing Tao
11:40 AM Bug #3239: metacat using illegitimate versions of EML schemas
does this mean that Metacat was generating the extra attribute and not Morpho? ben leinfelder
04:07 PM Revision 3807 (metacat): Separate eml201 schema (RELEASE_EML_2_0_1) and style tag (RELEASE_EML_2_0_1_UPDATE_6).
Jing Tao
 

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