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From 02/18/2009 to 03/19/2009

03/20/2009

06:02 PM Revision 4852 (metacat): added more documentation.
kanderson

03/19/2009

11:33 AM Bug #3907: Zero length documents are getting written to disk
Added code to make sure zero length docs do not get written. Michael Daigle
08:44 AM Bug #3907 (Resolved): Zero length documents are getting written to disk
From jim r:
As promised, below are some DPs that return a blank page when I attempt to view them on the web. Note ...
Michael Daigle
10:25 AM Revision 4851 (metacat): Do not read or write zero length documents to/from disk
daigle
10:01 AM Bug #3889: KNB and LTER metacats not replicating some 210 test docs
sbc_eml210_test.4 and sbc_eml210_test.5 are definitely erroring out on the knb side with an error described in ticket... Michael Daigle
09:59 AM Bug #3889: KNB and LTER metacats not replicating some 210 test docs
Moved the replication data permissions error to a separate ticket #3908 Michael Daigle
09:43 AM Bug #3889: KNB and LTER metacats not replicating some 210 test docs
Did you see any access control error which I reported on the second comment during the replication from lter to knb? Jing Tao
09:21 AM Bug #3889: KNB and LTER metacats not replicating some 210 test docs
checked on replication for the 6 packages listed when this bug was opened. Replication for these is at 50%. 3 out of ... Margaret O'Brien
09:57 AM Bug #3908 (Resolved): replication data user permission error
From Jing
I observed some error message during the replication from LTER to KNB:
Failed to write doc pisco_recru...
Michael Daigle
08:41 AM Bug #3906 (Resolved): Can't read files whose names are a path
During replication, Metacat is getting a lot of errors that look like:
knb 06:35:44,975: [ERROR]: error to handle...
Michael Daigle

03/18/2009

03:01 PM Revision 4850 (metacat): Added in-progress draft of Metacat Admin Guide.
kanderson
05:12 PM Revision 4849 (metacat): Handle all places where ldap may be null
daigle

03/17/2009

04:54 PM Revision 4848 (metacat): enclose more references to ldap and mesg in the if (ldap) statement.
daigle
04:40 PM Revision 4847 (metacat): made mesg var global to function.
daigle
04:35 PM Revision 4846 (metacat): left off ;
daigle
04:28 PM Revision 4845 (metacat): Do not try to use non-existant ldap object if ldap server is down.
daigle
02:41 PM Revision 4844 (metacat): made a few minor changes and additions.
kanderson
09:19 AM Bug #3889: KNB and LTER metacats not replicating some 210 test docs
Hi, Mike:
I observed some error message during the replication from LTER to KNB:
Failed to write doc pisco_recruitm...
Jing Tao
08:15 AM Bug #3895 (Closed): Add/update authentication architecture documentation
The current authentication documentation is out of date. Michael Daigle
08:14 AM Bug #3894 (Resolved): Document metacat eclipse dev setup
Fully document setting up metacat eclipse development environment Michael Daigle

03/16/2009

03:10 PM Bug #3891 (Resolved): Create a scheduler service
Right now, tasks in metacat are scheduled either via an event, like hitting metacat servlet, or timed delays. We sho... Michael Daigle
01:38 PM Bug #3889 (Resolved): KNB and LTER metacats not replicating some 210 test docs
Mike asked me to put this info into a bug.
sbc_eml210_test.6.2 (http://knb.ecoinformatics.org/knb/metacat/sbc_eml2...
Margaret O'Brien
01:24 PM Bug #3885: KNB metacat replication error log file is empty
There are several errors in ReplicationHandler that only report to the metacat log. These should report to the repli... Michael Daigle
01:12 PM Bug #3882: KNB Web links don't work correctly
Two issues. KNB web was still looking for cgi in the /cgi-knb directory. Changed it to look in /knb/cgi-bin.
Knbwe...
Michael Daigle
01:10 PM Bug #3883: OBFS skins still using ant tokens
The ant tokens were in the common directory for eml beta 6. Created beta 6 branch and fixed tokens in eml-settings. ... Michael Daigle
01:08 PM Bug #3853: Make sure the sbclter and pisco skins work with token replacement
Updated the SBCLTER skins with margaret. Chris said to leave pisco. They would make it work with an existing skin. Michael Daigle
09:12 AM Bug #3887: Add sessionid parameter to XML link in EML stylesheet
If the functionality is the same, can the session Id be left out? The URL will look much better and can also be maile... Margaret O'Brien

03/14/2009

09:28 AM Bug #3887 (Resolved): Add sessionid parameter to XML link in EML stylesheet
Margaret O'Brien recently reported the following problem accessing an XML-formatted EML document with protected acces... Duane Costa

03/13/2009

01:37 PM Revision 4843 (metacat): replace eml2_0_1-style-tag with eml2-style-tag
daigle
01:28 PM Revision 4842 (metacat): remove unneeded ecogrid.hostname property
daigle
01:27 PM Revision 4841 (metacat): Use only one eml common stylesheet directory for all post 2.0.0 beta versions of eml. Point all eml versions to that directory in skin xml files.
daigle
01:22 PM Revision 4840 (metacat): Increase database.maximumConnections from 25 to 200
daigle
01:20 PM Revision 4839 (metacat): Fix registryService file locations.
daigle

03/12/2009

04:40 PM Bug #3886 (Resolved): Metacat perfomance analysis
Metacat is using a lot of memory on production and seems to use many db connections. We should monitor and determine... Michael Daigle
10:46 AM Bug #3885 (Resolved): KNB metacat replication error log file is empty
In the new 1.9.0 knb metacat, it seems the replication log files' name are changed. Somehow the error log file is emp... Jing Tao
10:40 AM Bug #3881: Replication not working between KNB and LTER metacats
Got email from Duane and the replication seemed working. Jing Tao
06:07 PM Bug #3881: Replication not working between KNB and LTER metacats
After getting the new certificate issued for metacat.lternet.edu and change the server to metacat.lternet.edu:8443/kn... Jing Tao
05:50 PM Revision 4838 (metacat): made a couple corrections.
kanderson
05:26 PM Revision 4837 (metacat): Very rough draft of Metacat Admin guide outline
kanderson

03/11/2009

01:22 PM Bug #3884: Perl modules missing from 1.9.0 install
Completed the perl install instructions for 1.9.0 which included the Config::Properties module.
Works now.
Michael Daigle
01:21 PM Bug #3884 (Resolved): Perl modules missing from 1.9.0 install
Per Matt
Go to NCEAS skin (http://knb.ecoinformatics.org/knb/style/skins/nceas/)
then search for 'soil' which ...
Michael Daigle
01:21 PM Bug #3881: Replication not working between KNB and LTER metacats
LTER changed the host name of metacat. But the certificate and the host name in knb xml_replication has not been upda... Jing Tao
01:13 PM Bug #3881 (Resolved): Replication not working between KNB and LTER metacats
After the 1.9.0 upgrade on knb and lter, docs are not replicating from knb to lter. Jing is working with Duane C to ... Michael Daigle
01:19 PM Bug #3883 (Resolved): OBFS skins still using ant tokens
After the 1.9.0 Metacat release, Matt wrote:
Go to http://knb.ecoinformatics.org/knb/style/skins/obfs/
Search...
Michael Daigle
01:18 PM Bug #3882: KNB Web links don't work correctly
This was found after the 1.9.0 metacat release to KNB. Michael Daigle
01:17 PM Bug #3882 (Resolved): KNB Web links don't work correctly
There are several issues with links and hardcoded paths in knbweb. These have been reproduced in a dev environment.
...
Michael Daigle

03/10/2009

01:55 PM Revision 4836 (metacat): Draft of Metacat overview for scientists.
kanderson
01:52 PM Revision 4835 (metacat): Added draft of Metacat overview for scientists.
kanderson

03/06/2009

03:33 PM Revision 4833 (metacat): Use the EML_UTIL_0_9_0 tag
daigle

03/05/2009

01:39 PM Revision 4832 (metacat): Added jing's suggested changes
daigle
01:29 PM Revision 4831 (metacat): include NSF grant number
ben leinfelder
11:26 AM Revision 4830 (metacat): Add documentation for query caching and indexing mechanisms.
daigle
04:18 PM Revision 4829 (metacat): found more method that should be plural
Margaret O'Brien

03/04/2009

02:08 PM Revision 4828 (metacat): removed duplicate variable settings
Margaret O'Brien
02:00 PM Revision 4827 (metacat): fixed path for sibling access
Margaret O'Brien
10:19 AM Revision 4826 (metacat): 1. changed path for doc-level access to sibling instead of child
2. renamed template "datasetaccess" to datatableaccess and changed path to distribution/access Margaret O'Brien
10:02 AM Revision 4825 (metacat): updated templates to reflect new spelling of dateTime and methods in attributes.
Margaret O'Brien
09:31 AM Revision 4824 (metacat): Added eml 2.1.0 stylesheets for sbclter.
daigle

03/03/2009

09:59 AM Bug #3853: Make sure the sbclter and pisco skins work with token replacement
Email I sent to metacat developers:
I had to make a few changes to the way the sbclter skin works, mostly because th...
Michael Daigle
09:38 AM Revision 4823 (metacat): Create an eml 2.1.0 shared directory. Move skin specific xsl directives into sbclter directory: sbclter-eml-2.0.0.xsl and sbclter-eml-2.1.0.xsl
daigle

03/02/2009

11:08 AM Bug #3848: Update metacat to use new EML tags
Updated build.xml to use:
schema: RELEASE_EML_2_1_0
style: RELEASE_EML_UTILS_1_0_0_RC1
Had margaret add eml/defaul...
Michael Daigle
11:05 AM Revision 4822 (metacat): Add step to install Digest::SHA1
daigle
11:04 AM Revision 4821 (metacat): Update EML 2.1.0 schema and style (util) tags. These tags now only cover the files relative to each.
daigle
09:51 AM Bug #3853 (Resolved): Make sure the sbclter and pisco skins work with token replacement
Work with Margaret to knock out the remaining display issues on the sbclter skin. Michael Daigle
09:49 AM Bug #3849: Some perl make files are not included in metacat war install
Included autosplit.ix in the metacat distribution and added instructions for deploying that file on the server. Michael Daigle

02/27/2009

12:05 PM Revision 4820 (metacat): Clean perl code before building.
daigle
10:42 AM Revision 4819 (metacat): distribute perl autosplit.ix file with metacat. change tomcat startup script output to echos.
daigle
10:40 AM Revision 4818 (metacat): Add db rollback scripts
daigle
10:39 AM Revision 4817 (metacat): Add apache download instructions
daigle

02/26/2009

03:15 PM Bug #3849 (Resolved): Some perl make files are not included in metacat war install
The old perl "make install" would create a file named /usr/local/share/perl/5.8.8/auto/Metacat/autosplit.ix ...
T...
Michael Daigle
02:53 PM Bug #3848 (Resolved): Update metacat to use new EML tags
The separate tags for EML schema and styles work a little differently than before. Only the affected directories are... Michael Daigle

02/24/2009

06:06 PM Bug #3835 (In Progress): design and implement OAI-PMH compliant harvest subsystem
Metacat's current harvest mechanism works well but is a proprietary system. The Dryad project has proposed to implem... Matt Jones
05:33 PM Bug #3816: Export action doesn't create complete package
Mike,
This Metacat export bug is 1) a regression from prior behavior, and 2) sorely needs fixing for the NCEAS colla...
Matt Jones

02/23/2009

11:29 AM Revision 4816 (metacat): Remove initialization of MetacatUtil.buildIndexPaths in test files. This is taken care of in the background now using SystemUtil.getIndexPaths()
daigle

02/20/2009

01:28 PM Revision 4815 (metacat): update workers.properties with more standard ajp13 worker name (not used until apt-get install project)
daigle
11:16 AM Bug #3822: Spatial part of advanced search doesn't work
In include_advancedsearch.jsp, changed the javascript calls to lenght() to be just length (without parens). Michael Daigle
11:13 AM Revision 4814 (metacat): Removed the () from the javascript length functions in the submitRequest function.
daigle
09:58 AM Bug #3833 (Rejected): Advanced search (liveMap) map doesn't display on linux firefox
The map applet in advanced search doesn't display on unbuntu linux running firefox 3. duplicated this on my machine ... Michael Daigle

02/19/2009

04:56 PM Bug #3823: "make" dependency causes build to fail on windows
Does this also prevent installation of the various CGI files that might depend on that make successfully completing? Matt Jones
04:53 PM Bug #3823: "make" dependency causes build to fail on windows
Added a property to build.properties called make.perl.code. Setting this to false will block the cgi make from runni... Michael Daigle
04:49 PM Revision 4813 (metacat): add a build property "make.perl.code" so the cgi make can be turned off in build.xml on machines without make.
daigle
04:37 PM Bug #3826: Remove jdbc properties from build.properties if not needed
Removed database properties from build.properties. Michael Daigle
04:36 PM Bug #3825: indexPaths should be more readable in build.properties
Changed the indexPaths property to be multi-line and alphabetized. Had to modify SortedProperties to read multi-line... Michael Daigle
04:35 PM Bug #3830 (New): Add the ability to modify multi-line properties
Right now, SortedProperties will read a multi-line property, but not modify one. It should be able to modify a multi... Michael Daigle
04:30 PM Revision 4812 (metacat): Format indexPaths in metacat.properties. Remove from build.properties and build.xml. Move indexPath list getter from MetacatUtil to SystemUtil.
daigle

02/18/2009

11:31 AM Bug #3777: Move Tomcat libraries into metacat build
Review comments on ticket 3824 Michael Daigle
11:19 AM Bug #3777: Move Tomcat libraries into metacat build
We used to include those libs back in the Tomcat 3 days, but took them out as
the servlet library jars changed in Tom...
Matt Jones
11:30 AM Bug #3824: Normalize the app deploy dir in build.properties
Yeah, makes sense. Unfortunately, there is another domain specific issue (to be solved) which is that the knb websit... Michael Daigle
11:19 AM Bug #3824: Normalize the app deploy dir in build.properties
We used to include those libs back in the Tomcat 3 days, but took them out as
the servlet library jars changed in Tom...
Matt Jones
11:12 AM Bug #3824: Normalize the app deploy dir in build.properties
Referencing ticket 3777 which moves tomcat libs into metacat project and eliminates build.tomcat.dir from build.prope... Michael Daigle
11:09 AM Bug #3824: Normalize the app deploy dir in build.properties
My response:
The problem with 3 A is that the build.tomcat.dir is not necessarily the same as the app.deploy.dir. O...
Michael Daigle
 

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