Activity
From 10/20/2004 to 11/18/2004
11/18/2004
- 09:23 AM Bug #1734: ENM IIJ - Assemble Layer List into GARP *.dxl summary
- The ASCtoRAW actor assembles a list of layers and writes a *.dxl file as output.
- 09:22 AM Bug #1731: ENM IIE - Rescaling of layer grid information
- The ASCtoRAW actor handles the scaling when it converts *.ASC file to a *.RAW
format.
11/16/2004
- 02:47 PM Bug #1729: ENM IIC3 - Initial Preparation of Hydro1K data
- Created a JNI wrapper for the GDAL libraries. We can now call GDALTranslate()
via java/jni to convert from BIL files... - 10:57 AM Bug #1722: ENM IB - Convert DIiGR data source table to GARP input format
- fixed and pipeline updated
11/08/2004
- 09:06 AM Bug #1760: Decide on TCS version to work from
- My opinion is that we use the version proposed at TDWG (v0.85) and just replace
the "placeholder" types with the corr... - 07:40 AM Bug #1760 (Resolved): Decide on TCS version to work from
- With Trevor, decide on fixed version of TCS to code against for next development
cycle. Fix "anytype" fields to a s... - 08:50 AM Bug #1765: Investigate Hibernate for database and parser abstraction
- Parser dependency removed because hibernate (at least from what I've read) will
not help with parsing XML, but just c... - 07:49 AM Bug #1765 (In Progress): Investigate Hibernate for database and parser abstraction
- 07:53 AM Bug #1763: Strengthen SOAP server
- *** Bug 1764 has been marked as a duplicate of this bug. ***
- 07:48 AM Bug #1763 (New): Strengthen SOAP server
- SOAP server must be restarted almost daily - find a solution.
- 07:53 AM Bug #1764: Strengthen SOAP server
- oops
*** This bug has been marked as a duplicate of 1763 *** - 07:48 AM Bug #1764 (Resolved): Strengthen SOAP server
- SOAP server must be restarted almost daily - find a solution.
- 07:46 AM Bug #1762 (Resolved): Develop task list with dependencies and schedule
- With Dave Thau, create chart of development tasks decided upon at the Nov 2004
All-hands meeting. Get agreement fro... - 07:43 AM Bug #1761 (In Progress): Update object model (v1.1.0) to more closely mirror TCS
- Relationships are handled slightly differently, return values for
getRelatedConcept change, objects mirror TCS more ...
11/01/2004
10/29/2004
10/26/2004
- 11:46 AM Bug #1746 (In Progress): ENM IIIG - Saving GARP Rulesets for Climate Variation Calcs
- RuleSets that come from GARP calculations may need to be saved to the ECOGRID
for further use (e.g. climate change p...
10/22/2004
- 02:59 PM Bug #1745 (Resolved): Develop methods for creating/controlling parallel Kepler workflow calculations
- The ENM/GARP BEAM group started considering ways to carry out parallel
calculations for different species. A more ge... - 02:49 PM Bug #1744 (Resolved): ENM IIL - Convex Hull Actor
- There is a desire to be able to clip GARP environment layers based on a Convex
Hull region surrounding an existing s... - 12:23 PM Bug #1730: ENM IID - Regridding (Resampling) of layer grid information
- Note on terminology:
In grass, there is a raster operation called 'r.resampling'. When the resolution
of a raster cha... - 10:00 AM Bug #1730 (Resolved): ENM IID - Regridding (Resampling) of layer grid information
- It is assumed that all the input layer data have been converted to a standard
ascii grid format; i.e. equally spaced... - 11:58 AM Bug #1743 (Resolved): ENM IIIF - ROC Threshold Generator
- Description and Useage uncertain
Postponed - 11:55 AM Bug #1742 (Resolved): ENM IIIE - Best model filter
- Use Omission/Comission probablities and repeated GARP calculation of RuleSets to
determine the 'Best' rulesets. "Bes... - 11:50 AM Bug #1741 (Resolved): ENM IIID - GARP Error Matrix Generator
- Omission/Comission probablities can be calculated by comparing GARP occurence
predictions to known occurence locatio... - 11:25 AM Bug #1740 (Resolved): ENM IIIC - Example of ENM workflow iteration over several species
- Eventually, we want to be able to iterate the climate change GARP calculation
over many species (e.g. all mammals in... - 11:19 AM Bug #1739 (Resolved): ENM IIIB - Revise GARP workflow to show Climate Variation iterations
- For each species, we want to calculate the GARP species occurence prediction for
the current climate and then apply ... - 11:14 AM Bug #1738 (Resolved): ENM IIIA - Update GARP Workflow
- It was decided to make much of the GARP post-processing analysis optional at
this point in time (e.g. the statistica... - 11:04 AM Bug #1737 (Resolved): ENM III - ENM/GARP Calculations
- This bug/task represents the section of the workflow after the ocurrence data
and environment layers have been prepa... - 10:52 AM Bug #1736 (Resolved): ENM IIG - Projection Tool
- GARP input uses lat/long data and rasters rather than any particular map
projection. Some input layer data may be pr... - 10:42 AM Bug #1735 (In Progress): ENM IIK - Assemble entire GARP layer input workflow
- The propcessing operation for all the various layers used for GARP input need to
be assembled into a workflow that c... - 10:38 AM Bug #1734 (Resolved): ENM IIJ - Assemble Layer List into GARP *.dxl summary
- Layers used for GARP calculation need to be listed/summarized in a *.dxl XML
file. This file needs to be created and... - 10:34 AM Bug #1733 (Resolved): ENM IIH - Create Mask Layer for GARP
- Determine how to 'Mask' GARP input layers. Create a *.raw layer which is the
mask raster used by the GARP calculatio... - 10:30 AM Bug #1732 (Resolved): ENM IIF - Clipping Actor
- Need to be able to have a 'Clipping' actor that clips a raster grid to some
region defined by a polygon(?) vector. T... - 10:20 AM Bug #1731 (Resolved): ENM IIE - Rescaling of layer grid information
- For use in current GARP actors, all input layer grid values need to be scaled to
unsigned byte values (0-255) with s... - 09:19 AM Bug #1729 (In Progress): ENM IIC3 - Initial Preparation of Hydro1K data
- FOrmat of Hydro1K data needs to be examined to determine just what prepartion
needs to be done.
Responsible Part ... - 09:16 AM Bug #1728 (In Progress): ENM IIC2 - Initial Preparation of IPCC Climate Change Data
- There are 7 different IPCC climate change data sets. There are all at different
resolutions and stored as changes fr... - 09:13 AM Bug #1727 (Resolved): ENM IIC1 - Initial Preparation of IPCC Current Climate Data
- IPCC current climate data is in a format with the data averaged by month and all
12 months arranged sequentially in ... - 09:00 AM Bug #1726 (Resolved): ENM IIB - Modify EML Datasource actor to return SRB data
- EML references to SRB data sources should be retrievable and displayed as part
of the EMLDataSource actor.
Respon... - 08:57 AM Bug #1725 (New): ENM IIA - Prepare metadata for all input layers
- Prepare metadata (eml) describing IPCC climate change datasets and add meadata
to metatcat ecogrid and datafiles to ... - 08:51 AM Bug #1724 (In Progress): ENM II - Prepare Spatial Layers for GARP layer input
- GARP calculation requires a set spatial layers in a custom format. {Each layer
is a custom format binary raster scal...
10/21/2004
- 03:25 PM Bug #1722 (Resolved): ENM IB - Convert DIiGR data source table to GARP input format
- Given the DiGIR data source from a species ecogrid search (ENM Task IA), pull
out the longitude, latitude for each o... - 03:18 PM Bug #1721 (Resolved): ENM IA - DiGIR data source modifacation - Table by Species
- Task A in category I) - Creation of Species occurence data tables
Modify DiGIR datasource code to return a table w... - 03:12 PM Bug #1720 (Resolved): Create an example Kepler workflow for ENM/GARP calculations
- The SEEK BEAM group needs to create a Environmental Niche Model (ENM) workflow
for predicting species occurence dist...
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