Ecoinformatics Redmine

01/05/2010

04:08 PM Kepler Bug #4161: Develop kepler workflow execution engine

stylesheet issue on the Metacat side of things -- now fixed. ben leinfelder

11:40 AM Kepler Bug #4161: Develop kepler workflow execution engine

script-based execution still works. There's a slight problem on the Metacat side for the first MOML DTD...but that's ... ben leinfelder

10:09 AM Kepler Bug #4538: problems with KARs that contain tags from default ontologies

this looks wrong:
<property name="semanticType" class="org.kepler.sms.SemanticType"
value="urn:lsid:lsid.ecoinformati... ben leinfelder

10:05 AM Kepler Bug #4453: tags don't show up in snow leopard (10.6)

this is working for me on snow leopard ben leinfelder

10:04 AM Kepler Bug #4480: can't view more than one of workflow editor, report designer, and report viewer at a time

retargeting to post-2/wrp ben leinfelder

09:43 AM Kepler Bug #4618: First export of a run doesn't yield KAR with ROML

in the name of upcoming code freeze, I'm thinking this can be closed. ben leinfelder

12/29/2009

08:43 AM Morpho Bug #3314: Morpho abstract search comes up with 0

Okay - we can now add as many paths as we want, provided we know what we want...
I've got 'abstract' and 'abstract/pa... ben leinfelder

08:05 AM Morpho Bug #3314: Morpho abstract search comes up with 0

oh - it's defined, but not to any particular depth:
The "text" element allows for both formatted and
unforma... ben leinfelder

08:01 AM Morpho Bug #3314: Morpho abstract search comes up with 0

are there other children besides <para> that we might encounter or is it literally any possible child? ben leinfelder

07:59 AM Kepler Bug #4547: documentation for file parameter includes an error

Parsing the description is throwing an error - perhaps it's trying to substitute values or $ID?
Snippet from the File... ben leinfelder

12/27/2009

11:14 AM Kepler Bug #4547: documentation for file parameter includes an error

also in StringParameter.
It's not in the actor moml...so it must be in the action that is displaying the documentation ben leinfelder

11:10 AM Kepler Bug #4522: Folder not found in library index

just tried this (r22284) and it seems to be working. ben leinfelder

10:48 AM Kepler Bug #4439: reporting displays output for a different actor

More testing makes this look related to provenace:
I create a simple [runnable] workflow so that I can execute it to ... ben leinfelder

09:51 AM Kepler Bug #4618: First export of a run doesn't yield KAR with ROML

Would you just bump the run revision (entityId)? But then wouldn't that mean it's a different "run" rather than the s... ben leinfelder

09:23 AM Kepler Bug #4171: dragging actor to canvas then back to component tree area gives NPE

er, close ben leinfelder

09:23 AM Kepler Bug #4171: dragging actor to canvas then back to component tree area gives NPE

removed PTree override in reporting. all better now! ben leinfelder

08:56 AM Kepler Bug #4171: dragging actor to canvas then back to component tree area gives NPE

there's a PTree override in the reporting module...but I don't see it being referenced in that module. Looking into r... ben leinfelder

12/24/2009

01:27 PM Kepler Bug #4467: WRP - restarting/reopening Kepler throws error

I'm closing this since I can't ever get it to happen for me and there's been so much change since it was entered that... ben leinfelder

01:23 PM Kepler Bug #4534: add extra space before section headers when BREAK_BEFORE is false

added some padding above the section header text ben leinfelder

01:16 PM Kepler Bug #4480: can't view more than one of workflow editor, report designer, and report viewer at a time

we've changed it a bit: two views - the "reporting" view has 2 tabs: layout and instance. but you do still have to sw... ben leinfelder

01:13 PM Kepler Bug #4614: right click -> Open on an existing run adds an entry to the wrm

i don't see this happening in my build as of today (12-24-2009) ben leinfelder

01:09 PM Kepler Bug #4600: Changing workflow & running causes "execution history not found" message to appear in report viewer

I've not gotten this error. I had seen the blank report error from before.
With the latest fix, this should not be ha... ben leinfelder

01:07 PM Kepler Bug #4599: changing Expression and running problematic workflow generates blank report

okay - now when the LSID is changed, the layout manager listens for the change event and reassociates the layout with... ben leinfelder

11:13 AM Kepler Bug #4638: ant clean-all no longer works

just tried it at r22278 and it works ben leinfelder

12/23/2009

01:55 PM Morpho Bug #2563: Multiple repeated delimiter info not saved

it looks like there is code to put it in the additional metadata part of the EML doc.
but there were 18 entries of th... ben leinfelder

01:30 PM Morpho Bug #2285: Morpho creates a duplicate dp that has an existing docid

now morpho will now check with the metacat server for the last docid used for the current scope - not just the local ... ben leinfelder

01:24 PM Morpho Bug #2799: Access List doesn't include groups at LDAP root

Actually this looks like it is also a Metacat issue. The 'getprincipals' action only returns groups that are under an... ben leinfelder

01:07 PM Morpho Bug #2508: Incorrect example for relative attribute given in table wizard

'tis true.
Changed to degrees Celsius. ben leinfelder

12:59 PM Morpho Bug #1831: "other" organization field does not work

we're now able to refresh the list in the "new profile" dialog...and if it's not an Org that the server knows about t... ben leinfelder

12:56 PM Morpho Bug #2980: pubDate is not created for citation use when a Morpho Dataset is submitted

would this mean "editing" the EML doc just before upload? ben leinfelder

12:53 PM Morpho Bug #3243: initial profile creation does not list all organizations from LDAP

added a "Refresh" button in the "New Profile" dialog ben leinfelder

11:11 AM Morpho Bug #3314: Morpho abstract search comes up with 0

was using the pathexpr: "abstract" when it should be "abstract/para" ben leinfelder

10:58 AM Morpho Bug #3918: on macintosh, non-admin users cannot write the file accesslist.xml

Copy accesslist.xml to the .morpho ("config") directory on start up.
Reference only that file from then on. ben leinfelder

10:19 AM Morpho Bug #3918: on macintosh, non-admin users cannot write the file accesslist.xml

perhaps we should copy this into the .morpho directory? ben leinfelder

10:16 AM Morpho Bug #1275: Comments on Text Import Wizard from Andrea Chadden

There's extensive help on this topic available by clicking the "Help" button.
It seems as though this is more of a "d... ben leinfelder

10:03 AM Morpho Bug #930: Explanation of entity/attribute window display

added following to the metadata display on the right:
"Selected column or <entity metadata>"
where <entity metadata> ... ben leinfelder

12/18/2009

05:26 PM Morpho Bug #4617: Using Table Editor (see attached photo) mouse-click response is extremely slow

as an addendum:
-each invocation of the Tree Editor would force a new DP window to be created (and yet another listen... ben leinfelder

05:24 PM Morpho Bug #4617: Using Table Editor (see attached photo) mouse-click response is extremely slow

I've removed the "edit" button so the Tree Editor should not be invoked now.
And because of fixes/improvements done f... ben leinfelder

10:10 AM Morpho Bug #4617: Using Table Editor (see attached photo) mouse-click response is extremely slow

The "right-click->Edit Column Documentation" and "Data->Edit Column Documentation" both bring up the wizard editor wh... ben leinfelder

05:20 PM Morpho Bug #1777: Selecting columns is very slow

Now that the listeners are behaving themselves...closing ben leinfelder

03:20 PM Morpho Bug #1777: Selecting columns is very slow

I've made the datapackage frame tighter in a few ways:
1. Only listen/handle data selection events that originate in ... ben leinfelder

10:47 AM Morpho Bug #1777: Selecting columns is very slow

well it's not the actual column selection (see 4617 about background thread) - it's displaying the attribute metadata... ben leinfelder

05:19 PM Morpho Bug #2366: Selecting attributes in a table is slow

closing - reopen if we find it still has delays ben leinfelder

03:16 PM Morpho Bug #2366: Selecting attributes in a table is slow

believe this was resolved by recent change to StateChangeListening ben leinfelder

12/16/2009

10:57 AM Kepler Bug #4630: creating and changing relations don't trigger LSID bump

retargeting to 2.0 ben leinfelder

10:40 AM Kepler Bug #4571: report "lost" from KAR

Tried to "loose" the ROML - it just won't go away! Closing... ben leinfelder

12/15/2009

08:49 AM Kepler Bug #4473: Add WRM to bottom of report viewer for navigation

I'm really liking this the more I interact with it.
I even like how you can "open" a row in a new window if you do wa... ben leinfelder

08:47 AM Kepler Bug #4468: Report Viewer - message to run workflow first

Since we're not refreshing the viewer when you switch views (now a tab) the only time it comes up is when you use the... ben leinfelder

12/14/2009

11:21 PM Kepler Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR

I've at least addressed some of this in r22198.
I concentrated on editing wf/layout->saving kar->editing->saving.... ... ben leinfelder

11:18 PM Kepler Bug #4571: report "lost" from KAR

I believe r22198 will eliminate this problem. You should be able to open different KARs with different versions of th... ben leinfelder

12/11/2009

09:58 AM Morpho Bug #4625: authenticate against KNB, switch source to DEV, and still have access

what are some of the docids you are talking about: bot h for DEV and KNB? ben leinfelder

08:42 AM Morpho Bug #4625: authenticate against KNB, switch source to DEV, and still have access

are the packages saved locally? then they'll show up no matter what source is used. ben leinfelder

08:49 AM Kepler Bug #4619: WorkflowRuns not showing inside KARs in library

While unit tests would probably minimize this wheel spinning, I think it's non-trivial to develop them. Most of the i... ben leinfelder

12/08/2009

06:54 PM Kepler Bug #4577: integrate, and separate from save/export, the code for Uploading

oh, I like that - then the gui code never needs to "know" all the different kinds of metadata entry types, just that ... ben leinfelder

06:05 PM Kepler Bug #4613: EML 2 Dataset automatically updating to latest package doesn't trigger "workflow change"

It's odd that it does work for, say, the RExpression actor and the "Automatically display graphics" checkbox.
I'm not... ben leinfelder