Morpho

01/22/2010

06:00 PM Bug #4677: Windows 7 installer/testing

In installer/build/install-windows.xml, there is element named run-privileged. It can make the installer attempt to l... Jing Tao

05:05 PM Bug #4677: Windows 7 installer/testing

Here is the story:
During the installation on windows 7, the installer told me that it didn't have the permission to... Jing Tao

03:02 PM Bug #4677: Windows 7 installer/testing

Morpho installer couldn't be installed under c:\program files folder. Other than this, it worked. But morpho can be i... Jing Tao

05:39 PM Bug #2502: Should be able to enter missingValueCode elements to dp

a bigger morpho window is a great idea in general. Would this help display the buttons that get chopped off on Macs?... Margaret O'Brien

05:10 PM Bug #2502: Should be able to enter missingValueCode elements to dp

The fields are in the current wizard page - but they are not made visible.
We need more room on the page.
Make the fr... ben leinfelder

02:58 PM Bug #3171: Morpho install in Vista does not create a viewable sterr.log file

Just checking the on vista, morpho still can't generate the stderr.log file. Jing Tao

01:17 PM Bug #3171: Morpho install in Vista does not create a viewable sterr.log file

is this possibly a permission issue - the log is usually written to the install directory.
if we can't write to that ... ben leinfelder

02:04 PM Bug #3314: Morpho abstract search comes up with 0

just using <para> to match would free us from concerns of how deeply nested they might be...but it also wouldn't rest... ben leinfelder

01:57 PM Bug #2379: Table metadata lost when trying to import codes from second file

as part of the save-for-later enhancements recently made, this is no longer a problem.
After the message indicating t... ben leinfelder

01:03 PM Bug #4106: Add Cancel button to dialog for closing unsaved package

actually you can cancel it from the "save locally/network?" dialog after you say "yes" - but I added another cancel t... ben leinfelder

12:34 PM Bug #2308: No metadata shown if schemaLocation attribute set improperly

while this example of a "bad" schemaLocation isn't really a valid use of the schemaLocation attribute, I do think we ... ben leinfelder

11:45 AM Bug #1771: Deleting row of taxonomic info in DPW prevents selection of other rows,

now checking for out of range ben leinfelder

11:09 AM Bug #1771: Deleting row of taxonomic info in DPW prevents selection of other rows,

i'll take a look at this ben leinfelder

11:07 AM Bug #3897: Controlled vocabulary for Taxonomic Coverage

not part of 1.8 release. ben leinfelder

10:58 AM Bug #3482: Morpho options hang up on Ubunto 8.04 platform

was a symptom of a different bug ben leinfelder

10:58 AM Bug #4692: Morpho cannot open EML docs with <?xml-stylesheet> directive

recursively going through the XML to find the correct line - not assuming it is on the second. ben leinfelder

10:22 AM Bug #4692 (Resolved): Morpho cannot open EML docs with <?xml-stylesheet> directive

SBC and MCR LTER sites are including <?xml-stylesheet> directives in their EML docs. This is valid XML, but Morpho wa... ben leinfelder

01/21/2010

02:06 PM Bug #4688: miss-labeled Measurement Scale example

this has been fixed.
it is a duplicate of:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2508 ben leinfelder

01:52 PM Bug #4688: miss-labeled Measurement Scale example

see http://en.wikipedia.org/wiki/Level_of_measurement
I suggest something like this show on the page or help page:
"... gastil gastil

01:43 PM Bug #4688 (Resolved): miss-labeled Measurement Scale example

in the New Data Table Wizard
in Define Attribute or Column
for Category
Relative (statistically interval) sh... gastil gastil

02:04 PM Bug #4687: Morpho logs password in plaintext

the value is not printed for passwords now. ben leinfelder

12:50 PM Bug #4687 (Resolved): Morpho logs password in plaintext

from Gastil:
Morpho logs my password in plain text in the stderr.log file when there is a login error.
Call me para... ben leinfelder

11:15 AM Bug #3482: Morpho options hang up on Ubunto 8.04 platform

will try harder to break it - work with gastil to verify ben leinfelder

11:09 AM Bug #3482: Morpho options hang up on Ubunto 8.04 platform

This is Gastil's experience with Morpho 1.7 and ubuntu:
Using morpho-1.7.0 installed on Ubuntu 8.04 Hardy Heron
usin... Margaret O'Brien

01/20/2010

05:03 PM Bug #4096: Must click tab twice to display metadata for table without read access

this is so odd - must have something to do with differences in the AWT events between the OSes. Looked into it a bit ... ben leinfelder

03:15 PM Bug #3482: Morpho options hang up on Ubunto 8.04 platform

On my Ubuntu 8.04/JRE 1.5.0_15:
-downloaded 1.7.0 installer: no freezing
-ran from current SVN source: no freezing
W... ben leinfelder

02:57 PM Bug #2280: methodStep creation error

I used the wizard to create a methods element. This creates a description/section/para element. THen using the tree e... ben leinfelder

01:28 PM Bug #2988: Custom unit does not allways create the needed <additionalMetadata> tags

now Morpho inserts the appropriate additionalMetadata for any custom units that are used in the datapackage.
Note: cu... ben leinfelder

11:06 AM Bug #2988: Custom unit does not allways create the needed <additionalMetadata> tags

figured out how to recreate this error:
-define a custom unit in one EML file
-save and close that file
-open another... ben leinfelder

12:53 PM Bug #1211: add serialization to steps in DataPackage Wizard

Copy an email which described the morpho behavior:
1. When user clicks the new data package wizard button, a incompl... Jing Tao

01/19/2010

03:33 PM Bug #2206: Tree editor does not properly process additionalMetadata items when "trimming"

it seems that the "Show all" button can get us into dicey territory with the tree editor (adding all sorts of element... ben leinfelder

03:12 PM Bug #2206: Tree editor does not properly process additionalMetadata items when "trimming"

does not seem to be a problem with current Morpho codebase (circa 1.8 release)
additionalMetadata has changed for EM... ben leinfelder

03:02 PM Bug #2957: Other entity does not display other entity Description

added 'entitytype' parameter for the XSL. now the other entity meta data is rendering when appropriate ben leinfelder

01:28 PM Bug #2957: Other entity does not display other entity Description

the stylesheet that is checked in does not render other entity (for some unknown reason). Code is in the XSL to rende... ben leinfelder

12:25 PM Bug #2957: Other entity does not display other entity Description

we'll do this as part of being able to view/convert otherEntity elements to datatable entities. ben leinfelder

11:52 AM Bug #2988: Custom unit does not allways create the needed <additionalMetadata> tags

a few notes:
-this was an EML 2.0.1 document
-the latest codebase creates EML 2.1.0 that has a slightly different add... ben leinfelder

01/17/2010

05:34 PM Bug #4623: docid conflict box needs a button or something

Add Ok button to replace closing the dialog. I tested the change and it seems working to me Jing Tao

01/15/2010

12:22 PM Bug #4661: table 'worksheet' display not updated after table deleted

Change it to fixed status. Jing Tao

12:20 PM Bug #4661: table 'worksheet' display not updated after table deleted

close it. If margaret finds some issue, we will reopen it. Jing Tao

09:43 AM Bug #4661: table 'worksheet' display not updated after table deleted

In AbstractDataPackage method, there is variable to cache the attribute list of selected entity. This attribute list ... Jing Tao

12:18 PM Bug #4678 (Resolved): Modify the documentation for 1.8 release

I will draft a new version of user manual. Jing Tao

12:13 PM Bug #4677 (Resolved): Windows 7 installer/testing

Make sure Morpho installs and runs on Windows 7 ben leinfelder

12:07 PM Bug #3473: allow user to attach, replace, or delete data table on existing entity description

reassign/target for semtools ben leinfelder

12:07 PM Bug #4364: Convert otherEntity from registry to dataTable

reassign/target (semtools) ben leinfelder

11:54 AM Bug #1830: add KU to the org list in morpho

you can refresh the list now - driven by the LDAP that the Metacat points to... ben leinfelder

11:51 AM Bug #4623: docid conflict box needs a button or something

should be addressed for the 1.8 release. ben leinfelder

01/14/2010

04:28 PM Bug #4646: when upgrading from 2.0.1, morpho did not catch empty <offline> element

Hi, Margaret:
Can you put the original eml 2.0.1 or eml 2.0.0 document here as an attachement?
Thanks,
jing Jing Tao

03:41 PM Bug #1211: add serialization to steps in DataPackage Wizard

Hi, Ben:
Thanks for the input. Yeah, I agree to display both the incomplete foo.1.1 and complete foo.1.2.
Here are ... Jing Tao

01/13/2010

10:19 AM Bug #4661: table 'worksheet' display not updated after table deleted

I can reproduce bug on current svn version morpho. Jing Tao

01/12/2010

01:43 PM Bug #4661 (Resolved): table 'worksheet' display not updated after table deleted

a user wanted to replace a dataTable in a package. She chose 'Data->delete data table'. The data table disappeared, a... Margaret O'Brien

10:32 AM Bug #4657: morpho creates <keyword> elements out of keywordType attribute content

the keywordType attribute will now be preserved behind the scenes when editing with the wizard interface. ben leinfelder

01/08/2010

04:31 PM Bug #4657: morpho creates <keyword> elements out of keywordType attribute content

Good point, Ben - that if Morpho ignore the keywordType element, how does the user know an edited keyword still has t... Margaret O'Brien

04:00 PM Bug #4657: morpho creates <keyword> elements out of keywordType attribute content

simple solutions:
-pop up the tree editor when we encounter keywordType attributes
-remove them and carry one with th... ben leinfelder

02:39 PM Bug #4657: morpho creates <keyword> elements out of keywordType attribute content

is there a docid that hasn't yet been corrected? ben leinfelder

02:13 PM Bug #4657 (Resolved): morpho creates <keyword> elements out of keywordType attribute content

the <keyword> element has an optional attribute keywordType, as in this snippet from knb-lter-sbc.17.12
<keywordSe... Margaret O'Brien

01/07/2010

12:19 PM Bug #1211: add serialization to steps in DataPackage Wizard

>> Question 2: open dialg or search result frame detects foo.34.2 in incomplete
>> dir as crashed or saved-imconplete... Jing Tao

01/04/2010

03:04 PM Bug #4646: when upgrading from 2.0.1, morpho did not catch empty <offline> element

sorry - I listed the mropho version wrong
It was morpho are 1.6.1 that created the EML 201
and morpho 1.7 which did n... Margaret O'Brien

03:00 PM Bug #4646 (Resolved): when upgrading from 2.0.1, morpho did not catch empty <offline> element

a user updated her morpho to 1.7.1, and loaded a 2.0.1 package. The first thing she must do is upgrade to EML2.1.0
T... Margaret O'Brien

12/29/2009

09:26 AM Bug #3314: Morpho abstract search comes up with 0

Many of the TextType elements can be nested inside each other, too - so there is really no way to get all possible pa... Margaret O'Brien

08:43 AM Bug #3314: Morpho abstract search comes up with 0

Okay - we can now add as many paths as we want, provided we know what we want...
I've got 'abstract' and 'abstract/pa... ben leinfelder

08:05 AM Bug #3314: Morpho abstract search comes up with 0

oh - it's defined, but not to any particular depth:
The "text" element allows for both formatted and
unforma... ben leinfelder

08:01 AM Bug #3314: Morpho abstract search comes up with 0

are there other children besides <para> that we might encounter or is it literally any possible child? ben leinfelder

06:43 AM Bug #3314: Morpho abstract search comes up with 0

<abstract> is TextType, which means that the <para> element is optional. queries should search any children of <abstr... Margaret O'Brien