Activity
From 12/30/2007 to 01/28/2008
01/28/2008
- 10:25 PM Bug #3108 (Resolved): ENM GARP Baseline 3-Actor GARP - Browser Display demo fails with NameDuplication: convertTo?
- The problems below are probably common knowledge, but I've fixed up
the "about:" facility so that it will traverse t... - 09:39 PM Bug #3107 (Resolved): http links don't work: Unsupported file type or connection not supported
- Under Java 1.5.0 and Windows XP, if I try to click on a http: link
in an html window, I get:
Unsupported file ... - 08:54 PM Bug #3106 (New): Out of memory while opening all demos, is -Xss5m or SVG the problem?
- I'm marking this as having a target milestone of 1.0.0rc1 because
I suspect we should remove -Xss5m from build.xml b... - 04:24 PM Bug #3072: Security issues with distributed execution
- Its the ability to use the command line actor (for access to various custom simulation models) and the scripting acto...
- 03:52 PM Bug #3072: Security issues with distributed execution
- Ptolemy is reasonably well set up to use the Java sandbox, see $PTII/doc/sandbox.htm for details.
The sandbox has fa... - 04:19 PM Bug #3105 (Resolved): Getting Started link on Welcome Page should lead to demos
- This might be old news, but I'll report it anyway.
When I start up Kepler, the "Welcome" window has a link "Gettin... - 03:58 PM Bug #2363: Move Actions out of BasicGraphController
- If we solve this bug and move more code out of
exp/ptolemy/vergil/basic/BasicGraphController.java, then it will be e... - 03:38 PM Bug #3056: unable to print output of Display actor
- The issue here is that the Display actor does not implement the Java
Printable interface
Display has an inner class ... - 02:12 PM Bug #2921: Way to temporarily comment out actors or connections
- I'll take this bug, which discusses that it would be nice to have
a way to temporarily disable an actor or connections. - 02:03 PM Bug #3078: No documentation for the 'SSH to Execute' actor
- There is no documentation in the moml file. I've written to Kirsten to see if we can get some.
- 01:59 PM Bug #2318: Copyrights and licenses of subpackages need to be handled
- FOSSology (http://www.fossology.org/) could help manage the copyrights.
However, installing it is not easy, it requir... - 01:19 PM Bug #2914: Broken link on a web page
- removed the link from the page.
- 01:11 PM Bug #3089: Actor port properties lost after saving to library
- There was a bug in ActorMetadata where ports get added to the namedObj. The port attributes were getting added to th...
01/26/2008
- 10:27 AM Bug #2321: merge exp files into ptolemy CVS
- I merged in several files from kepler into ptII.
See kepler/src/exp/expfiles-merge-notes.txt
To merge more files, Po...
01/25/2008
- 12:37 PM Bug #3094: File keyboard shortcuts use ctrl key instead of apple key on Mac
- The change Christopher mentions fixed Configure Actor, as mentioned in comment #3.
I have not been able to find any ... - 12:02 PM Bug #3094: File keyboard shortcuts use ctrl key instead of apple key on Mac
- I folded a change from Derek (via Chad) to ConfigurationAction.java
into the ptII tree.
If you are having problems w... - 10:48 AM Bug #2834: Incorrect Actor Icons
- added matlab icon and assigned it to the matlab actor
changed icon to "control" icon for the following:
exceptionCon...
01/24/2008
- 05:08 PM Bug #3099: GetDocumentationAction.java needs to be moved into pII source
- Sorry for the confusion on this.
I went ahead and moved the code into ptII.
Perhaps 3053 could be reopened at a lower... - 05:00 PM Bug #3099: GetDocumentationAction.java needs to be moved into pII source
- Darn! it was moved to pII. Undo! closing this bug (again).
(sorry about all the bugzilla emails) - 04:51 PM Bug #3099: GetDocumentationAction.java needs to be moved into pII source
- This is actually a bug for GetDocumentationAction (not Top). Reopening this one since apparently you _can_ have mult...
- 04:13 PM Bug #3099: GetDocumentationAction.java needs to be moved into pII source
- I'm closing this, as I've updated the Ptolemy II tree with the Kepler
version of Top. - 08:45 AM Bug #3099: GetDocumentationAction.java needs to be moved into pII source
- Transferring to Chad since he has write access to the pII project and has also edited this file previously (v1.32 on ...
- 05:01 PM Bug #3075: Fold Top,java file in $KEPLER/src/exp/ dir into Ptolemy src
- This was moved into the pII tree and removed from kepler's src/exp
cvs log entry:
brooks 08/01/24 16:12:38
... - 02:16 PM Bug #3075: Fold Top,java file in $KEPLER/src/exp/ dir into Ptolemy src
- I've reworked the Top file we have in our src/exp tree:
-Removed the use of the Configuration class within Top
-Added... - 04:49 PM Bug #3103 (Resolved): Building actor documentation from within Kepler fails
- If the actor documentation does not exist, then when I select
Documentation -> Display, a window comes up that allow... - 04:48 PM Bug #2712: Problem with EML2DataSource with extra cols in csv file
- There is now a new parameter in the EML Datasource actor for "Allow lenient data parsing"
When it is checked (true), ... - 03:26 PM Bug #2712: Problem with EML2DataSource with extra cols in csv file
- Well, being lenient with this example dataset works...until we get to a record with 2.5 in a column described as an I...
- 04:02 PM Bug #3053: Multiple Documentation windows not possible
- This bug seems to only affect Kepler and not Ptolemy?
If I open a model in Ptolemy, I can right click on an actor, se... - 09:56 AM Bug #3053: Multiple Documentation windows not possible
- entered a new bug (3099) that finishes what this one started.
- 03:57 PM Bug #3102: Inclusion of R executable for Mac and Linux ?
- duplicate
*** This bug has been marked as a duplicate of bug 3101 *** - 03:38 PM Bug #3102 (Resolved): Inclusion of R executable for Mac and Linux ?
- We included a set of R executables for Windows as of beta3 and plan on doing so also for RC1. However, we do not incl...
- 03:57 PM Bug #3101: Inclusion of R executable for Mac and Linux ?
- *** Bug 3102 has been marked as a duplicate of this bug. ***
- 03:34 PM Bug #3101 (Resolved): Inclusion of R executable for Mac and Linux ?
- We included a set of R executables for Windows as of beta3 and plan on doing so also for RC1. However, we do not incl...
- 01:20 PM Bug #2572: Export KAR can produce several actors with the same lsid
- I fixed this bug by detecting the lsid collision and asking the user if he/she would like to change the id of the com...
01/23/2008
- 06:20 PM Bug #3099 (Resolved): GetDocumentationAction.java needs to be moved into pII source
- Rather than maintain a copy of this class in the src/exp directory, it should be included in in the ptolemy project. ...
- 06:18 PM Bug #3094: File keyboard shortcuts use ctrl key instead of apple key on Mac
- The Accelerators for the File Menu for OS X, i.e.
* Open File
* Save
* Print
* Close
have been fixed.
Configur... - 11:05 AM Bug #3094: File keyboard shortcuts use ctrl key instead of apple key on Mac
- I'll work on this for bug day today.
- 06:13 PM Bug #3053: Multiple Documentation windows not possible
- Committed changes to:
src/exp/ptolemy/vergil/basic GetDocumentationAction.java
configs/ptolemy/configs/kepler configu... - 03:27 PM Bug #3053: Multiple Documentation windows not possible
- Change to allow multiple documentation windows at once would be in the pII source:
ptolemy.vergil.basic.GetDocumentat... - 02:03 PM Bug #3053: Multiple Documentation windows not possible
- taking a stab at this for bug day...
- 04:55 PM Bug #3093: Unit test org.nddp.TestCollectionIOPort does not compile
- I added (empty) addInitializable() and removeInitializable() methods required by the ptolemy.actor.Initializable inte...
- 04:51 PM Bug #3091: Warnings building org.nddp.DataTypes
- I added two type-casts suggested by the compiler, and this eliminated the warnings.
- 03:47 PM Bug #1334: need installer for kepler
- An open source installer package is made up of several packages, especially for use on Windows OSs. The various steps...
- 02:25 PM Bug #3098: Cannot drag SampleDelay actor onto canvas
- Was a problem with my checkout.
- 12:14 PM Bug #3098: Cannot drag SampleDelay actor onto canvas
- Dragging SampleDelay actor works for me under Windows with no error message at least immediately after startup
- 11:58 AM Bug #3098 (Resolved): Cannot drag SampleDelay actor onto canvas
- Dragging SampleDelay onto canvas brings up an error message:
Cannot create entity without a class name. in [extern... - 01:18 PM Bug #2490: Get ecogrid endpoints from Ecogrid registry
- Refreshing the list of available services is working nicely locally - there's even an option to retain the existing (...
- 01:04 PM Bug #3083: Need sample CommandLine workflows for Windows
- Discovered the the problem could be reproduced when kepler was launched from kepler.bat or kepler.sh. Using the comma...
- 11:11 AM Bug #3083: Need sample CommandLine workflows for Windows
- Works for me under Windows and MacOSX
- 10:42 AM Bug #3083: Need sample CommandLine workflows for Windows
- I'm having trouble getting the CommandLine1 workflow to run on my PC/the latest nightly build (20081323). The workflo...
- 12:14 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
- ClassPathHacker is the name given by the author to his class for dynamic classpath additions. Using the authors choic...
- 11:37 AM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
- A class with the name 'ClassPathHacker' worries me a bit. I think we need a robust class loader that can work under a...
- 11:27 AM Bug #3097 (Resolved): incorrect classpath in generated ptexecute.sh and momlexecute.sh
- The scripts ptexecute.sh and momlexecute.sh generated by build.xml (v1.366)
do not have the jars in $KEPLER/lib/jar/... - 11:12 AM Bug #2933: Query Builder comparisons for strings, dates do not work
- This bug is closed and new bug to handle date type in data manager library will be added.
- 10:57 AM Bug #3090: ASC2RAWTest demo workflow error
- Cleaned up paths and changed the datasource to DirectoryListing. Workflow now executes on multiple platforms
- 10:03 AM Bug #3092: sampling_occurrenceData_ R.xml demo workflow
- changed file path to use propert("KEPLER") for cross platform comaptibility
- 08:46 AM Bug #3095 (New): add data mining actors (weka) and cheminformatics actors
- Joseph Maria requested the incorporation of data mining actors based on WEKA and cheminformatics actors based on CDK....
01/22/2008
- 05:57 PM Bug #2933: Query Builder comparisons for strings, dates do not work
- Dan tried to string comparison and it works for him. We talked this bug and think to close it in Kepler and add new b...
- 05:43 PM Bug #3094: File keyboard shortcuts use ctrl key instead of apple key on Mac
- The target design for menu and tool bars is here:
http://kepler-project.org/Wiki.jsp?page=MenuAndToolBarReDesign
He... - 05:40 PM Bug #3094 (Resolved): File keyboard shortcuts use ctrl key instead of apple key on Mac
- Unlike in View and Edit, File shortcuts use ^Key (ctrl+Key) instead of Apple^Key. These shortcuts include:
* Open... - 04:57 PM Bug #3093 (Resolved): Unit test org.nddp.TestCollectionIOPort does not compile
- The JUnit test org.nddp.TestCollectionIOPort does not compile, and has been renamed to TestCollectionIOPort.javaDISAB...
- 04:49 PM Bug #3092 (Resolved): sampling_occurrenceData_ R.xml demo workflow
- This demo workflow does not run properly because a hard-coded path is used for the file.
- 04:31 PM Bug #3091 (Resolved): Warnings building org.nddp.DataTypes
- Building Kepler yields two warnings with the message, "non-varargs call of varargs method with inexact argument type ...
- 04:18 PM Bug #3090 (Resolved): ASC2RAWTest demo workflow error
- When I try to run this workflow I get the java exception:
Cannot open file or URL in .ASC2RAWTest.Layer List Read... - 04:12 PM Bug #3089 (Resolved): Actor port properties lost after saving to library
- If I select an actor (e.g., Garp Prediction), add a semantic type to one of its input ports, and save it back to the ...
- 03:54 PM Bug #3086: Error with kepler20080122.zip version (PTII?)
- Problem now fixed with updated PTII
- 02:20 PM Bug #3086: Error with kepler20080122.zip version (PTII?)
- There was a change in diva.canvas.BasicZList.java (in PTII) on Jan 22 that is the apparent cause.
'throws NoSuchEleme... - 01:54 PM Bug #3086: Error with kepler20080122.zip version (PTII?)
- My bad. I was fixing FindBugs warnings.
Man-kit (Jackie) Leung fixed this in the
Ptolemy II tree.
I just checked in n... - 01:43 PM Bug #3086 (Resolved): Error with kepler20080122.zip version (PTII?)
- The nightly zipped version (kepler20080122) ends up having a recurring error shown in the terminal when the cursor is...
- 03:53 PM Bug #3083: Need sample CommandLine workflows for Windows
- Two new example CommandLine workflows added to $KEPLER/demos/getting-started.
- 11:29 AM Bug #3083 (Resolved): Need sample CommandLine workflows for Windows
- We need some simple examples of how to use the CommandLine actors especially for Windows systems. These should be in ...
- 01:28 PM Bug #2493: actor repository tracking bug
- the PutService for ecogrid-1.0.0 will include support for filenames. Metacat already handles this, so the download s...
- 11:48 AM Bug #2493: actor repository tracking bug
- This bug is currently blocked by 3084. Metacat and the grid interfaces need to be updated before this bug can be fix...
- 11:59 AM Bug #3077: Querybuilder: condition "operator" and "criteria" are not being saved
- This bug is duplicate to bug 3076.
In the OKAction.actionPeformed method in QBApp.java, a TableCellEditor.stopCellEd... - 11:59 AM Bug #3076: Need to hit 'Return" key to enter a Criteria in QueryBuilder
- This bug is duplicate to bug 3077.
In the OKAction.actionPeformed method in QBApp.java, a TableCellEditor.stopCellEd... - 11:22 AM Bug #1334: need installer for kepler
- Currently, the plan is to use the open source software Izpack and Launch4J for the next Kepler release. (also JarBund...
01/21/2008
- 01:32 PM Bug #2490: Get ecogrid endpoints from Ecogrid registry
- As part of the upcoming 1.0.0 release [candidate], there are some substantial changes to the SEEK ecogrid and registr...
01/18/2008
- 04:08 PM Bug #3078 (Resolved): No documentation for the 'SSH to Execute' actor
- No documentation appear for the 'SSH to Execute' actor (org.sdm.spa.Ssh2Exec)
- 01:39 PM Bug #3077: Querybuilder: condition "operator" and "criteria" are not being saved
- See bug #3076
- 01:39 PM Bug #3077: Querybuilder: condition "operator" and "criteria" are not being saved
- from IRC:
[1:35pm] dan: when you add a criteria, you have to hit 'return'
[1:35pm] dan: just hitting OK won't work
[1... - 12:12 PM Bug #3077 (Resolved): Querybuilder: condition "operator" and "criteria" are not being saved
- When using the Querybuilder interface to construct queries on EML datasource actor, the condition[s] are not being sa...
- 12:17 PM Bug #2933: Query Builder comparisons for strings, dates do not work
- Although the transformation to the HSQL date format is a change, its probably going to be necessary for many systems....
- 10:58 AM Bug #2933: Query Builder comparisons for strings, dates do not work
- After changing the double quotes symbol to single quotes for string value in the query, the string comparison works n...
- 11:59 AM Bug #2940: Querybuilder with EMLDatasource actor does not return data
- Ben tried the workflow and it worked for him too.
- 11:25 AM Bug #2987: Kepler Library (actor repository) Issues
- 1 and 2 are fixed. the other two can be pushed to post 1.0
- 11:21 AM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
- This is now fixed. It was caused when the actor library was rebuilt after an update. the actorLibrary entity was se...
- 10:20 AM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
- I've verified that dan's way of reproducing this works. Not sure what the issue is.
- 11:07 AM Bug #3076 (Resolved): Need to hit 'Return" key to enter a Criteria in QueryBuilder
- You must hit the return key to force an entry in the Criteria column of the QueryBuilder. If you just enter the crite...
- 10:35 AM Bug #1836: data search and access problems via ecogrid
- In 2008 workshop in New Mexico, the ecogrid search worked fine. Dan and I think we can close this bug.
01/17/2008
- 05:48 PM Bug #2940: Querybuilder with EMLDatasource actor does not return data
- This problem wasn't caused by multiple tables or single table. Actually there is a space in attribute name cause the ...
- 03:25 PM Bug #2490: Get ecogrid endpoints from Ecogrid registry
- My first sentence in comment #1 "...optionally retrieved at startup" is wrong.
I had it occurring at startup for awh... - 02:28 PM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
- Problems can be seen if one follows this sequence:
1) Create a customized RExpression actor called Test1. Add to libr... - 12:59 PM Bug #3075: Fold Top,java file in $KEPLER/src/exp/ dir into Ptolemy src
- There is now a StringAttribute that set the default File|Open directory. So this file should be ready to move to PTII...
- 12:10 PM Bug #3020: Exporting an actor to a kar does not include internal jars
- When you export an actor to a kar file, it now asks you if you want to include the class file. if so, any associated...
01/16/2008
- 03:59 PM Bug #3075 (Resolved): Fold Top,java file in $KEPLER/src/exp/ dir into Ptolemy src
- Getting the FILE|Open menu to initially point to the $KEPLER/demos directory required a change to the PTII ptolemy/gu...
- 03:58 PM Bug #2935: MetadataSource actor has no documentation
- Documentation added to kar file moml
- 03:48 PM Bug #3074 (Resolved): Code library installation issues
- There are several issues with compiled code libraries (*.dll, *.so, *.dylib files) and where they must be located. Th...
- 03:00 PM Bug #3073 (Resolved): Heartbeat function for slaves
- When a slave registers itself with the earthgrid registry, there needs to be a way to tell if that slave still exists...
- 02:58 PM Bug #3072 (Resolved): Security issues with distributed execution
- See bug 3071. basically, the issues are that arbitrary code can be executed on the slaves so the utmost care needs t...
- 02:56 PM Bug #3071: KAR files should be sent along with workflow to slaves
- kar files should be signed so that the recipient at least can know that they are coming from who they should be.
- 02:55 PM Bug #3071 (Resolved): KAR files should be sent along with workflow to slaves
- When a master sends the workflow out to the slaves, it should also send any kar files that are needed for execution o...
- 02:54 PM Bug #3070 (Resolved): Need access control GUI for slaves
- Kepler needs a gui that allows a user to set access control rules for the local slave if it is running via the gui.
- 02:53 PM Bug #3069 (Resolved): start slave from gui
- A user should be able to start a slave controller from the gui instead of starting it from the command line. The com...
- 02:51 PM Bug #3068 (Resolved): rmiregistry should be started programmatically
- A user wanting to use the distributed system should not have to start the rmiregistry manually. kepler should start ...
- 02:41 PM Bug #2880: Problem with some commands in command line actor
- These commands now work using the CommandLineExec actor.
- 02:23 PM Bug #3026: Actor documentation does not appear in older workflows
- This has been fixed in many of the GettingStarted demos but not in all the workflows in the demos directory.
- 02:21 PM Bug #2914: Broken link on a web page
- Note that missing doc is on Ilkay's server
- 02:02 PM Bug #2990: file|open dialog should open in workflows directory
- File|Open now initially opens into the $KEPLER/demos directory and remembers where the last location was (until shut-...
- 01:25 PM Bug #2941: Command Line Exec Actor throws exception when given input on "arguments" port
- This has been fixed (as of CommandLineExec.java v1.9) and I've added some workflows to better test this actor.
- 01:22 PM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
- Comment #3 about the Ptolemy links is certainly valid. There is the issue about making sure all the Ptolemy example w...
- 01:11 PM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
- BTW - I think Kepler loses something by not having
the Ptolemy demos available. There are plenty of
demos and they ... - 12:01 PM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
- The broken link was removed from the intro page.
- 10:50 AM Bug #3055: DarwinCoreDatasource actor does not work in wit output 'As Field'
- As Field and As Row setting now iterate through all the rows of the data
01/15/2008
- 07:54 PM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
- Some preliminary tests indicated that the indicated problems occur when a second actor is added, after the first acto...
- 04:43 PM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
- I'll have to check this out more. We just used this during the training workshop and this functionality worked well....
- 04:41 PM Bug #3066 (New): actor sdk
- We need an SDK for building actors so that it is easier for people writing new java actors. the SDK would include a ...
- 02:44 PM Bug #2833: 'Open' problem with new DarwinCoreDataSource actor
- Data is now downloaded when actor is first dragged to the work area, allowing access to the query builder
- 12:48 PM Bug #3054: Importing a kar file claims actor is already cached
- This is now fixed.
01/11/2008
- 03:11 PM Bug #3063: CommandLineExec actor does not generate Exit code
- Fixed the code so that it does return a '1' on the exitCode port when there is no error in executing the Command Line...
- 01:41 PM Bug #3063 (Resolved): CommandLineExec actor does not generate Exit code
- Supposedly, the CommandLineExec actor will generate a '1' on the exitCode output when the execution of the command li...
- 01:02 PM Bug #3062 (New): Need ASC grid Utilities actor
- Currently there are actors (developed for the ENM example) for working with ASC grids. Such spatial grid actors allow...
- 12:06 PM Bug #3061 (Resolved): Need IPCC data by month
- The ClimateFileProcessor and ClimateChangeFileProcessor actors are custom actors for reading IPCC climate data. The d...
- 11:37 AM Bug #3056: unable to print output of Display actor
- Both the Display window and the Text Editor have a 'Print...' menu item but it does not appear to do anything! Note t...
01/09/2008
- 03:43 PM Bug #2939: Add ability to access password protected EarthGrid data from within Kepler
- Changes to the registry (proposed)
I've augmented the existing EcogridRegEntryType with two elements:
-authentication... - 11:04 AM Bug #3056 (Resolved): unable to print output of Display actor
- The Display actor receives summary output from an RExpression actor. The summary displays perfectly, but does not pr...
01/08/2008
- 09:24 PM Bug #3055 (Resolved): DarwinCoreDatasource actor does not work in wit output 'As Field'
- The DarwinCoreDataSource actor can have its output set to 'As Field'. However, it then appears not to iterate through...
- 12:41 PM Bug #3054 (Resolved): Importing a kar file claims actor is already cached
- If you try to import a kar file containing a composite, sometimes an error is thrown that the actor already exists in...
- 12:39 PM Bug #3053 (Resolved): Multiple Documentation windows not possible
- Only a single documentation window can appear at a time and it remains the first one opened.
01/07/2008
- 10:34 AM Bug #2967: Add a 'View data' menu to data source actors
- The work done on bug #2966 has bled into this entry. They should probably just be consolidated into one bug. I've a...
01/04/2008
- 12:12 PM Bug #2966: Add a 'Preview data' menu to data source actors
- Added a recast() method to the PersistentTableModel implementation. This allows us to make an initial pass over the ...
- 11:53 AM Bug #3052: Installer crashes with EXC_BAD_ACCESS
- reportedly this occurred on OS X Tiger - 10.4.11
A check using OS X 10.5.1 worked OK;
Default Java should be 1.5 (...
01/03/2008
- 04:58 PM Bug #3052 (Resolved): Installer crashes with EXC_BAD_ACCESS
- Here's the start of the crash log:
Host Name: djbmac
Date/Time: 2008-01-04 13:20:10.617 +1300
OS Ver...
01/02/2008
- 04:29 PM Bug #2966: Add a 'Preview data' menu to data source actors
- Ported the PersistentTableModel from Morpho to make use of the [already] ported version of PersistentVector. This su...
- 02:19 PM Bug #2833: 'Open' problem with new DarwinCoreDataSource actor
- Uping the Severity because this bug causes a problem with DarwinCore actors newly dragged from the Data search panel....
12/31/2007
- 11:20 AM Bug #2966: Add a 'Preview data' menu to data source actors
- Did an initial pass at this for EML200DataSource actor. Uses a JTable (with simple sorting). Have not tried it with...
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